Hostname: page-component-cd9895bd7-p9bg8 Total loading time: 0 Render date: 2024-12-27T07:21:55.353Z Has data issue: false hasContentIssue false
  • English
  • Français

Arctoparmelia collatolica (Parmeliaceae), a new species from Siberia, Russia

Published online by Cambridge University Press:  04 November 2019

Sergey V. CHESNOKOV Open the ORCID record for Sergey V. CHESNOKOV [Opens in a new window] ,
Ilya A. PROKOPIEV ,
Ivan V. FROLOV ,
Liudmila A. KONOREVA ,
Gregory S. EVDOKIMOV  and
Alexey L. SHAVARDA
Sergey V. CHESNOKOV
Affiliation:
Botanical Garden-Institute FEB RAS, Makovskogo Str. 142, Vladivostok, 690024, Russia; Komarov Botanical Institute, Russian Academy of Sciences, Professor Popov Str. 2, St. Petersburg, 197376, Russia. Email: lukinbrat@mail.ru
Ilya A. PROKOPIEV
Affiliation:
Institute for Biological Problems of the Cryolithozone, Siberian Branch, Russian Academy of Sciences, Lenin Ave. 41, Yakutsk, 677980, Russia; Komarov Botanical Institute, Russian Academy of Sciences, Professor Popov Str. 2, St. Petersburg, 197376, Russia.
Ivan V. FROLOV
Affiliation:
Botanical Garden, Urals Branch, Russian Academy of Sciences, Vos'mogo Marta 202a Str., Yekaterinburg, 620144, Russia.
Liudmila A. KONOREVA
Affiliation:
Botanical Garden-Institute FEB RAS, Makovskogo Str. 142, Vladivostok, 690024, Russia; Komarov Botanical Institute, Russian Academy of Sciences, Professor Popov Str. 2, St. Petersburg, 197376, Russia; The Polar-Alpine Botanical Garden-Institute of the Kola Science Centre, Russian Academy of Sciences, Botanical Garden Str., Kirovsk, 184256, Russia.
Gregory S. EVDOKIMOV
Affiliation:
St. Petersburg State University, Universitetskaya emb. 7–9, St. Petersburg, 199034, Russia.
Alexey L. SHAVARDA
Affiliation:
Komarov Botanical Institute, Russian Academy of Sciences, Professor Popov Str. 2, St. Petersburg, 197376, Russia.
Get access Rights & Permissions [Opens in a new window]

Abstract

Arctoparmelia collatolica is described as a species new to science based on morphological, chemical and molecular data. The species is similar to the usnic acid-deficient chemotype of A. centrifuga but differs in the grey-brown to brown upper surface in the central part of the thallus and ivory white to pale brown rhizines. The species contains collatolic acid and its derivatives. Seven secondary lichen substances are reported as new for the genus Arctoparmelia. A key to Arctoparmelia taxa is provided.

Keywords

collatolic acidlichensmetabolite profilingtaxonomyTrans-Baikal Territoryusnic acidYakutia
Type
Articles
Information
The Lichenologist , Volume 51 , Issue 5 , September 2019 , pp. 407 - 417
Copyright
Copyright © British Lichen Society 2019 

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Altermann, S., Leavitt, S. D., Goward, T., Nelsen, M. P. & Lumbsch, H. T. (2014) How do you solve a problem like Letharia? A new look at cryptic species in lichen-forming fungi using Bayesian clustering and SNPs from multilocus sequence data. PLoS ONE 9: e97556.Google Scholar
Arup, U. & Grube, M. (2000) Is Rhizoplaca (Lecanorales, lichenized Ascomycota) a monophyletic genus? Canadian Journal of Botany 78: 318–327.Google Scholar
Blanco, O., Crespo, A., Divakar, P. K., Esslinger, T. L., Hawksworth, D. L. & Lumbsch, H. T. (2004) Melanelixia and Melanohalea, two new genera segregated from Melanelia (Parmeliaceae) based on molecular and morphological data. Mycological Research 108: 873–884.Google Scholar
Clayden, S. R. (1992) Chemical divergence of eastern North American and European populations of Arctoparmelia centrifuga and their sympatric usnic acid-deficient chemotypes. Bryologist 95: 1–4.Google Scholar
Crespo, A., Lumbsch, H. T., Mattsson, J.-E., Blanco, O., Divakar, P. K., Articus, K., Wiklund, E., Bawingan, P. A. & Wedin, M. (2007) Testing morphology-based hypotheses of phylogenetic relationships in Parmeliaceae (Ascomycota) using three ribosomal markers and the nuclear RPB1 gene. Molecular Phylogenetics and Evolution 44: 812–824.Google Scholar
Crespo, A., Kauff, F., Divakar, P. K., del Prado, R., Pérez-Ortega, S., Amo de Paz, G., Ferencova, Z., Blanco, O., Roca-Valiente, B., Núñez-Zapata, J., et al. (2010) Phylogenetic generic classification of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence. Taxon 59: 1735–1753.Google Scholar
Cubero, O. F., Crespo, A., Fatehi, J. & Bridge, P. D. (1999) DNA extraction and PCR amplification method suitable for fresh, herbarium-stored, lichenized, and other fungi. Plant Systematics and Evolution 216: 243–249.Google Scholar
Divakar, P. K., Crespo, A., Kraichak, E., Leavitt, S. D., Singh, G., Schmitt, I. & Lumbsch, H. T. (2017) Using a temporal phylogenetic method to harmonize family and genus-level classification in the largest clade of lichen-forming fungi. Fungal Diversity 84: 101–117.Google Scholar
Fries, T. M. (1871) Lichenographia Scandinavica. Pt. 1. Uppsala: Lundequist.Google Scholar
Gardes, M. & Bruns, T. D. (1993) ITS primers with enhanced specificity for basidiomycetes – application to the identification of mycorrhizae and rusts. Molecular Ecology 2: 113–118.Google Scholar
Guindon, S., Dufayard, J. F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology 59: 307–321.Google Scholar
Hale, M. E. (1986) Arctoparmelia, a new genus in the Parmeliaceae (Ascomycotina). Mycotaxon 25: 251–254.Google Scholar
Hale, M. E. (1990) A synopsis of the lichen genus Xanthoparmelia (Vainio) Hale (Ascomycotina: Parmeliaceae). Smithsonian Contributions to Botany 74: 1–250.Google Scholar
Hall, T. A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98.Google Scholar
Hasselrot, T. E. (1953) Nordliga lavar i Syd- och Mellansverige. Acta Phytogeographica Suecica 33: 1–200.Google Scholar
Hillmann, J. (1926) Beiträge zur Systematik der Flechten. Annales Mycologici 24: 138–144.Google Scholar
Himelbrant, D. E., Stepanchikova, I. S. & Kuznetsova, E. S. (2014) Lichens. In Vegetation Cover of Volcanic Plateaus of Central Kamchatka (Klyuchevskaya Group of Volcanoes) (Yu. Neshataeva, V., ed.): 121–164. Moscow: A partnership of scientific editions KMK.Google Scholar
Kalb, K., Staiger, B., Elix, J. A., Lange, U. & Lumbsch, H. T. (2008) A new circumscription of the genus Ramboldia (Lecanoraceae, Ascomycota) based on morphological and molecular evidence. Nova Hedwigia 86: 23–42.Google Scholar
Katoh, K. & Standley, D. M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772–780.Google Scholar
Katoh, K., Kuma, K., Tohand, H. & Miyata, T. (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research 33: 511–518.Google Scholar
Kharpukhaeva, T. M. (2010) Lichens of the Dzherginsky State Nature Reserve. Ulan-Ude: Publishing house of Buryat Scientific Center of the Siberian Branch of the Russian Academy of Sciences.Google Scholar
Kristinsson, H., Zhurbenko, M. & Hansen, E. S. (2010) Panarctic checklist of lichens and lichenicolous fungi. CAFF Technical Report 20: 1–120.Google Scholar
Kuznetsova, E., Ahti, T. & Himelbrant, D. (2007) Lichens and allied fungi of the Eastern Leningrad Region. Norrlinia 16: 1–62.Google Scholar
Lanfear, R., Calcott, B., Ho, S. Y. & Guindon, S. (2012) PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution 29: 1695–1701.Google Scholar
Lanfear, R., Frandsen, P. B., Wright, A. M., Senfeld, T. & Calcott, B. (2016) PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution 34: 772–773.Google Scholar
Makryi, T. V. & Lishtva, A. V. (2005) Lichens. In Biota of Vitimsky Reserve: Flora (Bardunov, L. V., Chechetkina, L. G., Makryi, T. V., Malyshev, L. I, Petrov, A. N., Lishtva, A. V., Lopatovskaya, O. G. & Maksimova, E. N., eds): 115–175. Novosibirsk: Academic Publishing House ‘Geo’.Google Scholar
Moberg, R. & Thell, A. (2011) Arctoparmelia. In Nordic Lichen Flora, Vol. 4 (Thell, A. & Moberg, R., eds): 19–21. Uppsala: Nordic Lichen Society.Google Scholar
Nylander, W. (1875) Addenda nova ad Lichenographiam europaeam. Flora, Regensburg 58: 102–112.Google Scholar
Oxner, A. M. (1993) Lichen Flora of Ukraine. Vol. 2(2). Kiev: Naukova DumkaGoogle Scholar
Peršoh, D. & Rambold, G. (2002) Phacopsis – a lichenicolous genus of the family Parmeliaceae. Mycological Progress 1: 43–55.Google Scholar
Poelt, J. & Vězda, A. (1981) Bestimmungsschlüssel europäischer Flechten, Ergänzungsheft II. Bibliotheca Lichenologica 16: 1–390.Google Scholar
Poryadina, L. N. (2005) Lichens. In Diversity of the Vegetation World of Yakutia (Danilova, N. S., ed.): 126–149. Novosibirsk: Publishing House of the Siberian Branch of the Russian Academy of Sciences.Google Scholar
Rassadina, K. A. (1971) Family Parmeliaceae. In Handbook of the Lichens of the USSR 1 (Abramov, I. I., ed.): 282–386. Leningrad: Nauka.Google Scholar
Santesson, R. (1984) The Lichens of Sweden and Norway. Stockholm: Swedish Museum of Natural History.Google Scholar
Sedelnikova, N. V. (2013) Species diversity of lichen biota of the Altai-Sayan ecological region. Plant Life of Asian Russia 2: 12–54.Google Scholar
Smith, C. W., Aptroot, A., Coppins, B. J., Fletcher, A., Gilbert, O. L., James, P. W. & Wolseley, P. A. (eds) (2009) The Lichens of Great Britain and Ireland. London: British Lichen Society.Google Scholar
Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312–1313.Google Scholar
Tchabanenko, S. I. (2002) Checklist of the Flora of Lichens in the South of the Russian Far East. Vladivostok: Dalnauka.Google Scholar
Thell, A. (1999) Group I intron versus its sequences in phylogeny of cetrarioid lichens. Lichenologist 31: 441–449.Google Scholar
Thell, A., Stenroos, S., Feuerer, T., Kärnefelt, I., Myllys, L. & Hyvönen, J. (2002) Phylogeny of cetrarioid lichens (Parmeliaceae) inferred from ITS and β-tubulin sequences, morphology, anatomy, and secondary chemistry. Mycological Progress 1: 235–254.Google Scholar
Thell, A., Feuerer, T., Kärnefelt, I., Myllys, L. & Stenroos, S. (2004) Monophyletic groups within the Parmeliaceae identified by ITS rDNA, β-tubulin and GAPDH sequences. Mycological Progress 3: 297–314.Google Scholar
Thell, A., Crespo, A., Divakar, P. K., Kärnefelt, I., Leavitt, S. D., Lumbsch, H. T. & Seaward, M. R. D. (2012) A review of the lichen family Parmeliaceae – history, phylogeny and current taxonomy. Nordic Journal of Botany 30: 641–664.Google Scholar
Urbanavichene, I. N. & Urbanavichus, G. P. (2008) The first results of studying the lichen flora of the Okinskoe Plateau (East Sayan, Republic of Buryatia). In Fundamental and Applied Problems of Botany at the Beginning of the XXI Century: Materials of the All-Russian Conference (Petrozavodsk, September 22–27, 2008). Part 2: Phycology. Mycology. Lichenology. Bryology (Vinogradova, K. L., Gagarina, L. V., Kovalenko, A. E., Kurbatova, L. E., Luknitskaya, A. F., Novozholov, Yu. K., Potemkin, A. D., Predtechenskaya, O. O., Titiov, A. N. & Urbanavichene, I. N., eds): 249–252. Petrozavodsk: Karelian Research Center of the Russian Academy of Sciences.Google Scholar
Urbanavichus, G. & Urbanavichene, I. (2017) New records and noteworthy lichens and lichenicolous fungi from Pasvik Reserve, Murmansk Region, Russia. Folia Cryptogamica Estonica 54: 31–36.Google Scholar
Urbanavichus, G. P. & Fadeeva, M. A. (2013) Addition to the lichen flora of Pasvik Reserve (Murmansk Region). Vestnik Tver State University, Series Biology and Ecology 30: 77–84.Google Scholar
Urbanavichus, G. P. & Urbanavichene, I. N. (2004) Lichens. In The Present-day State of Biological Diversity within Protected Areas in Russia. Issue 3. Lichens and Bryophytes (Korneeva, T. M., ed.): 5–235. Moscow: IUCN – The World Conservation Union.Google Scholar
Urbanavichus, G. P., Urbanavichene, I. N. & Melekhin, A. V. (2013) The Lichen Flora of the Lapland State Nature Biosphere Reserve (Annotated List). Apatity: KNTs RAN.Google Scholar
Vitikainen, O. & Dudoreva, T. (2003) Arctoparmelia subcentrifuga new to Europe. Graphis Scripta 14: 3–4.Google Scholar
White, T. J., Bruns, T. D., Lee, S. B. & Taylor, J. W. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: A Guide to Methods and Applications (Innis, M. A., Gelfand, D. H., Sninsky, J. J. & White, T. J., eds): 315–322. San Diego: Academic Press.Google Scholar