Escherichia coli tRNALysSUU,
as well as human tRNALys3SUU, has
2-thiouridine derivatives at wobble position 34 (s2U*
34). Unlike the native tRNALysSUU,
the full-length, unmodified transcript of human
tRNALys3UUU and the unmodified
tRNALys3UUU anticodon stem/loop
(ASLLys3UUU) did not bind AAA- or
AAG-programmed ribosomes. In contrast, the completely
unmodified yeast tRNAPhe anticodon stem/loop
(ASLPheGAA) had an affinity
(Kd = 136 ± 49 nM) similar to
that of native yeast tRNAPheGmAA
(Kd = 103 ± 19 nM). We have
found that the single, site-specific substitution of
s2U34 for U34 to produce
the modified ASLLysSUU was sufficient
to restore ribosomal binding. The modified
ASLLysSUU bound the ribosome with an
affinity (Kd = 176 ± 62 nM)
comparable to that of native tRNALysSUU
(Kd = 70 ± 7 nM). Furthermore,
in binding to the ribosome, the modified ASLLys3SUU
produced the same 16S P-site tRNA footprint as did native
E. coli tRNALysSUU, yeast
tRNAPheGmAA, and the unmodified ASLPheGAA. The unmodified
ASLLys3UUU had no footprint at all.
Investigations of thermal stability and structure monitored
by UV spectroscopy and NMR showed that the dynamic conformation
of the loop of modified ASLLys3SUU was
different from that of the unmodified ASLLysUUU,
whereas the stems were isomorphous. Based on these and other
data, we conclude that s2U34 in
tRNALysSUU and in other
s2U34-containing tRNAs is critical for
generating an anticodon conformation that leads to effective
codon interaction in all organisms. This is the first example
of a single atom substitution (U34 →
s2U34) that confers the property of
ribosomal binding on an otherwise inactive tRNA.