We present the most recent data on the seasonal and spatial occupation of South American sea lions (Otaria flavescens) and fur seals (Arctocephalus australis) in the Wildlife Refuge of Ilha dos Lobos (WRIL) in southern Brazil throughout the year, based on aerial photographic counts. Thirty-one aerial photographic counts were conducted between July 2019 and November 2020 to assess monthly differences in the abundance of pinnipeds in the WRIL. The results were analysed using a generalized linear model. Spatial analysis was performed using kernel density. Subadult males of South American sea lion were the most abundant pinniped in the WRIL, followed by juveniles of South American fur seal. A juvenile of Southern elephant seal (Mirounga leonina) was also recorded. South American fur seals showed a marked seasonality, occurring only between July and October, while South American sea lions occurred year-round. Among the months analysed, September exhibited the highest mean abundance (mean 113.75; SD: ± 8.58), followed by August (mean 103.00; SD: ± 15.69). The pinnipeds were more often concentrated in the northern and central parts of the island. This study reinforces the importance of the WRIL as a haulout site for pinnipeds. Considering the seasonal occupation of the island by South American pinnipeds, monitoring is recommended prior to the development of activities in the area.