Several weedy red rice populations have evolved resistance to imidazolinone
herbicides worldwide. The understanding of the factors related to the
herbicide resistance in weedy red rice is important to prevent its
occurrence in new areas where imidazolinone-resistant rice cultivars are
being used, and to manage the new rice cultivars resistant to herbicides
with modes of action other than the acetolactate synthase (ALS)-inhibitors
that are being developed. The objectives of this study were to analyze the
relationship of weedy red rice populations from southern Brazil with rice
cultivars and wild Oryza species and to evaluate the
occurrence of introgression from rice cultivars and seed migration as the
origin of resistance to imidazolinone herbicides in weedy rice. The study
was based on 27 weedy red rice populations, seven rice cultivars, and four
wild Oryza species that were genotyped with 24 simple
sequence repeats and three ALS-specific single-nucleotide
polymorphism markers. A large proportion of the genetic variation of the
weedy red rice populations was found within (74%) rather than among
populations (26%). The weedy red rice populations were more closely related
to the newer rice cultivars that are imidazolinone-resistant than to the
older cultivars. The South American native Oryza
glumaepatula and the other wild Oryza
species—Oryza rufipogon, Oryza longistaminata, and
Oryza glaberrima—clustered separately from weedy red
rice populations, indicating a low likelihood of introgression among weedy
red rice and these wild species. Seed migration was an important factor in
the genetic structure of the evaluated weedy red rice populations, although
gene flow by pollen from resistant cultivars was the principal reason for
the spread of herbicide resistance.