Model parasite species, whose entire life cycle can be completed in the laboratory and maintained for multiple generations, have played a fundamental role in our understanding of host–parasite interactions. Yet, keeping parasites in laboratory conditions may expose them to unnatural evolutionary pressures, and using laboratory cultures for research is therefore not without limitations. Using 2 widely-used model helminth species, the cestode Hymenolepis diminuta and the nematode Heligmosomoides polygyrus, I illustrate the caution needed when interpreting experimental results on model species. I first review more than 1200 experimental studies published on these species in the past 4 decades, to determine which research areas they have contributed to. This is followed by an examination of the institutional laboratory cultures that have provided the parasites used in these studies. Some of these have persisted for decades and accounted for a substantial proportion of published studies, whereas others have been short-lived. Using information provided by the curators of active cultures, I summarize data on their origins and maintenance conditions. Finally, I discuss how laboratory cultures may have been subject to the influence of evolutionary genetic processes, such as founder effects, genetic drift and inbreeding. I also address the possibility that serial passage through laboratory hosts across multiple generations has exerted artificial selection on several parasite traits, resulting in genetic and phenotypic divergence among laboratory cultures, and between these cultures and natural parasite populations. I conclude with recommendations for the continued usage of laboratory helminth cultures aimed at maximizing their important contribution to parasitological research.

Here we present a comparison of saddle and eye patch patterns of killer whales from Norwegian, Icelandic, British, Spanish and Greenlandic waters. We found only a small amount of variation in saddle patch shapes, which may reflect a recent phylogenetic divergence from the most recent common ancestor. Eye patch shapes were more variable than saddle patches in small details. Most individuals had eye patches with parallel orientation, with the exception of a small group of killer whales from the Hebrides, which, as previously reported, had sloping eye patches that sloped downward at the posterior end. This differentiation in pigmentation patterns of the Hebridean killer whales from neighbouring populations could reflect one or more of several evolutionary processes, including a deeper phylogenetic divergence, low gene flow with other local populations and drift.

In order to highlight the genetic status and origin of Moroccan apricot populations, trees were collected from ten oasis agroecosystems and analysed with AFLP markers. A total of 87 accessions and 12 cultivars grown in Moroccan orchards, including ‘Canino’ and ‘Del Patriarca’ cultivars, were surveyed and compared with in situ Tunisian and ex situ Montfavet (France) collections. Our results highlighted a narrow genetic diversity in the Maghreb region (Tunisia and Morocco) associated with a strong differentiation from the other groups, which supports a bottleneck effect. A similar model was illustrated at a finer geographical scale, i.e. the Draa Valley in Morocco. Genetic structure appeared as two major clusters subdivided into six sub-clusters in which Moroccan germplasm constituted specific groups in comparison with other Mediterranean apricots. Moroccan germplasm was classified into three sub-clusters, two of which were formed by genotypes related to ‘Del Patriarca’ and ‘Canino’, respectively. The present study highlights the wide Moroccan apricot's diversity in traditional agroecosystems, and also suggests a substantial gene flow occurring from recently introduced cultivars (‘Canino’ and ‘Del Patriarca’) to local apricot populations, thus leading to local germplasm diversification through seedling propagation. If we consider its geographical position, the historical diffusion of the species and farming practices, Morocco could be viewed as an additional centre of secondary diversification for apricot. Understanding the origin and specificity of local apricot populations is crucial for managing local collections in regard to adaptive traits for arid and Saharan conditions as well as for introducing local genetic resources into current breeding programmes.

We study the evolution in time of the joint distribution of a pair of Feller processes, related by the fact that some random time ago they were identical, evolving as a single Feller process; from that time on, they began to evolve independently, conditional on a state at the time of split, according to the same Feller transition probabilities. Such processes are involved in the Fisher-Wright model: the distribution of the time counted backwards from the present to the time of split in the past is a function of deterministic but time-varying effective size 2N of the population from which the two processes are sampled. In terms of a corresponding family of Feller operators, assuming asymptotic stability or ergodicity of the process of mutation, we find the limit form of the distribution of such pairs of processes sampled from decaying, asymptotically constant, and growing populations. In the case where mutation is not asymptotically stable or ergodic, limit distributions are found for the distribution of relative differences.

During the past 50 years the number of badgers (Meles meles) in Denmark has declined by c. 50%. To assess the genetic consequences of the demographic decline, six DNA-microsatellite loci were used to analyse 139 badger tissue-samples, which were collected in 1995–98 from three zones (1, 2 and 3) in Jutland (Denmark). Results from contemporary samples were compared to data obtained from DNA extracted from teeth belonging to 39 badgers collected from zones 1 and 2 in 1957–66. The microsatellites showed a low to moderate polymorphism, and the within area genetic diversity (HE) was relatively low (0.308≤HE≤0.441) as compared to other carnivores and mustelids. Genetic differentiation among the three recent sampling zones was significant (FST=0.072, P<0.0001). The FST values between the two recent (FST=0.092, P<0.0001) and the two historical samples (zones 1 and 2; FST=0.073, P<0.0001) were significant and similar. The HE and FST of the recent and historical zones were not significantly different (P>0.05). Despite the drastic recent decline, Danish badgers did not show apparent signs of genetic bottlenecks in both recent and historical samples. The use of molecular techniques which allowed us to work with small amounts of degraded DNA extracted from old teeth, allowed us to exclude the hypothesis that genetic differentiation between zones 1 and 2 was owing to a barrier, which has appeared in the last 50 years. Furthermore, the low genetic variability and therefore the relatively high genetic differentiation shown by Danish badgers were also shown not to be the result of the recent drastic population decline.

We consider a pair of Markov chains representing statistics of the Fisher-Wright-Moran model with mutations and drift. The chains have absorbing state at 0 and are related by the fact that some random time τ ago they were identical, evolving as a single Markov chain with values in {0,1,…}; from that time on they began to evolve independently, conditional on a state at the time of split, according to the same transition probabilities. The distribution of τ is a function of deterministic effective population size 2N(·). We study the impact of demographic history on the shape of the quasi-stationary distribution, conditional on nonabsorption at the margin (where one of the chains is at 0), and on the speed with which the probability mass escapes to the margin.

With an increase in the number of candidate genes for important traits in livestock, effective strategies for incorporating such genes into selection programmes are increasingly important. Those strategies in part depend on the frequency of a favoured allele in a population. Since comprehensive genotyping of a population is seldom possible, we investigate the consequences of sampling strategies on the reliability of the gene frequency estimate for a bi-allelic locus. Even within a subpopulation or line, often only a proportion of individuals will be genotype tested. However, through segregation analysis, probable genotypes can be assigned to individuals that themselves were not tested, using known genotypes on relatives and a starting (presumed) gene frequency. The value of these probable genotypes in estimation of gene frequency was considered. A subpopulation or line was stochastically simulated and sampled at random, over a cluster of years or by favouring a particular genotype. Line was simulated (replicated) 1000 times. The reliability of gene frequency estimates depended on the sampling strategy used. With random sampling, even when a small proportion of a line was genotyped (0·10), the gene frequency of the population was well estimated from the across-line mean. When information on probable genotypes on untested individuals was combined with known genotypes, the between-line variance in gene frequency was estimated well; including probable genotypes overcame problems of statistical sampling. When the sampling strategy favoured a particular genotype, unsurprisingly the estimate of gene frequency was biased towards the allele favoured. In using probable genotypes the bias was lessened but the estimate of gene frequency still reflected the sampling strategy rather than the true population frequency. When sampling was confined to a few clustered years, the estimation of gene frequency was biased for those generations preceding the sampling event, particularly when the presumed starting gene frequency differed from the true population gene frequency. The potential risks of basing inferences about a population from a potentially biased sample are discussed.

The majority (98%) of the 174 female elephants in South Africa's Addo Elephant National Park are tuskless. Long-term records are used to assess trends in tusklessness in this elephant population throughout the 20th century. These data are then used to test hypotheses of possible causes of this tusklessness. It is shown that attributes of the region's vegetation (structure and/or nutrient composition) and selective hunting cannot provide adequate explanations for the high frequency of tusklessness among the Addo elephants. Non-selective genetic changes resulting from the population's isolation, small size and bottlenecks (during the 1800s and 1920s) are suggested to be primarily responsible for the observed tusklessness. The rapid increase in the frequency of tusklessness during the past 70 years provides a phenotypic indicator of underlying genetic drift.

Genetic diversity in four populations of the Eurasian badger Meles meles from Denmark was estimated by allozyme electrophoresis. Low genetic variability was found within populations as compared to the variability found in badger populations from other countries, whereas significant genetic differentiation was found between populations. The low genetic variability and the differentiation between populations is explained by the fragmentation of the Danish landscape, which reduces the effective population size of local populations and the gene flow between them. Low genetic variability found for Danish badgers also supports the hypothesis of a rapid recolonization following the last glaciation.

Tsetse colonized either for laboratory studies or for release in S. I. T. programmes are assumed to be healthy and geneticallyw similar to flies in natural populations. However, insect colonies are subjected to many of the same evolutionary forces that influence genetic changes in natural populations, i.e. drift, selection, hitch-hiking, mutations, assortative mating and immigration. The influence of these on genetic structure of tsetse fly colonies is outlined, and examples are presented from several species. There is little or no evidence for adaptation during the early phases of laboratory colonization of five species of tsetse. A model is presented indicating that with as little as a 5% fitness difference between males, some colonies have existed long enough to have undergone significant changes in the relative numbers of males having “standard” and “enhanced” fitness. Slight changes in heterozygosity of colonized flies is documented by comparing colonies and field-collected flies and by comparisons within colonies over periods of several generations or years. An example of hitch-hiking is illustrated with the closely linked genes Sr (sex ratio) and Est-X in Glossina morsitans submorsitans. A possible interaction between alleles at these loci is discussed. A summary is presented of polyacrylamide gel electrophoretic methods for monitoring 16 polymorphic loci distributed among the X chromosome and autosomes of tsetse.

The characteristic values of certain matrices (underlying multiple allele models in population genetics) are investigated and related to the asymptotic behavior of Pr(at least k distinct alleles in the population at time t).

The method developed for the treatment of the classical drift models of Wright and Moran, and their generalizations, in Cannings (1974) are extended to more complex haploid models. The possibility of subdivision of the population, as for migration models and age-structured models, is incorporated. Models with variable size or reproductive structure determined by another Markov chain are analysed.

The rate of genetic drift at an autosomal locus for a bisexual, diploid population of fixed size is studied. The generations are non-overlapping. The model encompasses a variety of mating systems, including random monogamy, random polygamy in one sex and random mating. The rate of drift is shown for several models to depend on the expected number of parents that two randomly selected individuals have in common. The male and female offspring are assigned to families in a fairly general way, which permits the study of a model in which each family has offspring of one sex only. The equation arising in this last case is identical to one of Jacquard for a system in which sib-mating is excluded.

Haploid models of genetic drift in populations of constant size are considered. Generalizations of the models of Moran and Wright have been developed by Karlin and McGregor (for multiple alleles and non-overlapping generations), by Chia and Watterson (for two alleles and overlapping or non-overlapping generations) and by Chia (for multiple alleles and overlapping or non-overlapping generations), using conditioned branching processes. A new approach is developed which contains the models mentioned above and provides simpler expressions for the latent roots. A greater dependence between the birth events and death events can be permitted, and non-independent mutations treated.

The paper discusses models for genetic drift in haploid models; non-overlapping models following Wright, and overlapping models following Moran. It is shown that these models, and their extensions by Chia and Watterson, can all be restated as non-overlapping models. This equivalence between the two sets of models greatly facilitates the specification of latent roots and vectors.