Immunoglobulins of human heavy chain subgroup III
have a binding site for Staphylococcal protein
A on the heavy chain variable domain (VH),
in addition to the well-known binding site on the Fc portion
of the antibody. Thermodynamic characterization of this
binding event and localization of the Fv-binding site on
a domain of protein A is described. Isothermal titration
calorimetry (ITC) was used to characterize the interaction
between protein A or fragments of protein A and variants
of the hu4D5 antibody Fab fragment. Analysis of binding
isotherms obtained for titration of hu4D5 Fab with intact
protein A suggests that 3–4 of the five immunoglobulin
binding domains of full length protein A can bind simultaneously
to Fab with a Ka of 5.5 ± 0.5
× 105 M−1. A synthetic
single immunoglobulin binding domain, Z-domain, does not
bind appreciably to hu4D5 Fab, but both the E and D domains
are functional for hu4D5 Fab binding. Thermodynamic parameters
for titration of the E-domain with hu4D5 Fab are n
= 1.0 ± 0.1, Ka = 2.0 ±
0.3 × 105 M−1, and ΔH
= −7.1 ± 0.4 kcal mol−1.
Similar binding thermodynamics are obtained for titration
of the isolated VH domain with E-domain
indicating that the E-domain binding site on Fab resides
within VH. E-domain binding to an IgG1
Fc yields a higher affinity interaction with thermodynamic
parameters n = 2.2 ± 0.1, Ka
> 1.0 × 107 M−1, and
ΔH = −24.6 ± 0.6 kcal mol−1.
Fc does not compete with Fab for binding to E-domain indicating
that the two antibody fragments bind to different sites.
Amide 1H and 15N resonances that
undergo large changes in NMR chemical shift upon Fv binding
map to a surface defined by helix-2 and helix-3 of E-domain,
distinct from the Fc-binding site observed in the crystal
structure of the B-domain/Fc complex. The Fv-binding region
contains negatively charged residues and a small hydrophobic
patch which complements the basic surface of the region
of the VH domain implicated previously
in protein A binding.