Sagittal otolith morphology and otolith shape of two megrim species, Lepidorhombus boscii and Lepidorhombus whiffiagonis, were compared using descriptive morphological characters and Wavelet shape coefficients. Differences in otolith shape were examined by linear discriminant analysis (LDA). The first discriminant axis explained 66.6% of the variation between the groups, and the second axis 28.5%. Otolith classification based on LDA showed that in 79.5% of cases an otolith can be correctly classified based only on its shape. Relationships between otolith morphometric parameters (length and width) and fish size (total length) were described by fitting simple linear regression models. For L. boscii the highest positive correlation was found between right otolith width and total body length (R2 = 0.82), and for L. whiffiagonis between left otolith length and total body length (R2 = 0.39).