Both the peptidase activity against small fluorescent
peptide substrates and the ATPase activity of Lon (La)
proteases are stimulated by unstructured proteins such
as α-casein. This stimulation reveals the simultaneous
interaction of Lon with two proteolytic substrates—α-casein
and the peptide substrate. To understand the cellular function
of this stimulation, it is important to determine the physical
properties of Lon stimulators. The abilities of compositionally
simple random copolymers of amino acids (rcAAs) to stimulate
the peptidase and ATPase activities of the Lon protease
from Mycobacterium smegmatis (Ms-Lon) and its
N-terminal truncation mutant (N-E226) were determined.
We report that cationic but not anionic rcAAs stimulated
Ms-Lon's peptidase activity but were themselves poor
substrates for the enzyme. Peptidase stimulation by rcAAs
correlated approximately with the degree of hydrophobicity
of these polypeptides and reached levels >10-fold higher
than observed previously for Ms-Lon stimulators such as
α-casein. In contrast to α-casein, which stimulates
Ms-Lon's peptidase activity by 40% and ATPase activity
by 150%, rcAAs stimulated peptidase activity without concomitant
stimulation of ATPase activity. Active site labeling experiments
suggested that both rcAAs and ATP increased peptidase activity
by increasing accessibility to the peptidase active site.
Peptidase activity assays in the presence of both α-casein
and rcAAs revealed that interactions of rcAAs and α-casein
with Ms-Lon are extremely complex and not mutually exclusive.
Specifically, (1) additions of low concentrations of α-casein
(<50 μg/mL) caused a further stimulation of Ms-Lon's
rcAA-stimulated peptidase activity; (2) additions of higher
concentrations of α-casein inhibited Ms-Lon's
rcAA-stimulated peptidase activity; (3) additions of all
concentrations of α-casein inhibited N-E226's
rcAA-stimulated peptidase activity. We conclude the Ms-Lon
can interact with an rcAA, α-casein, and a substrate
peptide simultaneously, and that formation of this quaternary
complex requires the N-terminal domain of Ms-Lon. These
data support models of Ms-Lon that include two allosteric
polypeptide binding sites distinct from the catalytic peptidase
site.