Internal cephalodia of Lobaria pulmonaria were examined in two British locations, one in western Scotland (Isle of Skye) and the other in England (Cumbria, Lake District), sites which were predicted to have contrasting levels of fixed nitrogen deposition. Cephalodia were found to occupy a small proportion of the total biomass averaging (<1%) in both areas. Modelled nitrogen deposition in the sites in Cumbria was 3–6 times higher than in the Skye sites but the cephalodium relative biomass was not significantly different. It is suggested that local climatic and topographic effects might have reduced the estimated rate of nitrogen deposition at the former sites.

The new genus Sinuicella, an early successional lichen, was found on bare soil in Oregon, USA. The thallus is minute fruticose, grey to nearly black, branching isotomic dichotomous, branches round, 20–90 μm wide in water mount. The cortex is composed of interlocking cells shaped like jigsaw puzzle pieces. Spores are hyaline, 1-septate, 25–40(–50) × 6.5–9(–11) μm. Maximum likelihood phylogenetic analyses on multilocus data sets, first spanning the entire order Peltigerales and then restricted to Peltigeraceae with extended sampling from Solorina and Peltigera, revealed the placement of Sinuicella outside of currently recognized genera, sister to Peltigera, with high support. Based on the phylogenetic, morphological and ecological distinctness of Sinuicella, we formally introduce a new genus represented by the single species S. denisonii. The cyanobiont of S. denisonii is Nostoc from phylogroup XL, Clade 2, Subclade 3 based on the rbcLX marker.

The reflectance spectroscopic characteristics of cyanobacteria-dominated microbial mats in the McMurdo Dry Valleys (MDVs) were measured using a hyperspectral point spectrometer aboard an unmanned aerial system (remotely piloted aircraft system, unmanned aerial vehicle or drone) to determine whether mat presence, type and activity could be mapped at a spatial scale sufficient to characterize inter-annual change. Mats near Howard Glacier and Canada Glacier (ASPA 131) were mapped and mat samples were collected for DNA-based microbiome analysis. Although a broadband spectral parameter (a partial normalized difference vegetation index) identified mats, it missed mats in comparatively deep (> 10 cm) water or on bouldery surfaces where mats occupied fringing moats. A hyperspectral parameter (B6) did not have these shortcomings and recorded a larger dynamic range at both sites. When linked with colour orthomosaic data, B6 band strength is shown to be capable of characterizing the presence, type and activity of cyanobacteria-dominated mats in and around MDV streams. 16S rRNA gene polymerase chain reaction amplicon sequencing analysis of the mat samples revealed that dominant cyanobacterial taxa differed between spectrally distinguishable mats, indicating that spectral differences reflect underlying biological distinctiveness. Combined rapid-repeat hyperspectral measurements can be applied in order to monitor the distribution and activity of sentinel microbial ecosystems across the terrestrial Antarctic.

A new cyanolichen, Peltigera islandica sp. nov. in the section Peltigera (‘P. canina group’) is described from Iceland. This species is similar in general appearance to P. rufescens and P. membranacea, but may be recognized by its downturned lobe tips and narrow lobes, respectively. Most thalli are bright emerald green in colour when moist, although a dark khaki green colourmorph is also documented. Monophyly of P. islandica s. lat. (i.e. including P. sp. A sensu O’Brien et al., from Canada) is significantly supported based on ITS sequences and corroborated by molecular synapomorphy (absence of the ITS1 hypervariable region). Analysis of the rbcLX locus indicates the cyanobiont of P. islandica (Nostoc sp.) comprises strains belonging to a pool of Icelandic genotypes, some of which are present in other Peltigera species, including P. “neorufescens”, another taxon new to Iceland collected during this study. Association with photobionts that are shared by other local species suggests P. islandica may be well established in Iceland, but a review of herbarium collections as well as broader field surveys are needed to better characterize its geographical distribution.

The composition of fatty acids (FAs) is known to discriminate families within genera of bacteria, fungi, octocorals and algae. Here, we applied the more sensitive gas chromatographic (GC) analysis to investigate the taxonomic value of using FA composition to discriminate 15 species of lichen, including three chlorolichens (two Cladonia species and Stereocaulon scutelligerum), nine tripartite lichens (Stereocaulon species) and three cyanolichens (Lichina pygmaea, Collema cristatum, Peltigera membranacea). One macroscopic cyanobacterium (Nostoc sp.), corresponding to the photobiont partner of Peltigera and Collema cyanolichens, was included for comparison. Five lipid extraction methods were evaluated, using Stereocaulon scutelligerum. Shaking at 80 °C with chloroform/methanol (2:1, v/v) was the most efficient and reproducible method. The total FA composition of the 16 species was compared, using GC coupled with flame ionization detection or mass spectrometry. A statistical hierarchical cluster analysis was used to determine the similarity between the FA profiles, based on total, saturated, unsaturated and branched-chain FAs (BCFAs). The BCFA profile allowed a distinction between the Stereocaulon species and the cyanolichens, in contrast to all the other types of FAs. A detailed characterization of eight FA subclasses, provided by the GC analysis, suggested a preferential pathway for the biogenesis of unsaturated FAs through desaturases, which was especially favoured in the cyanolichens.

Reports of ‘Psoroma sphinctrinum’ from Palaeotropical areas are shown to represent instead species of the genus Gibbosporina, which is described here as new to science. This genus is superficially similar to tripartite, austral Pannaria species, such as the species now referred to as Pannaria sphinctrina (Mont.) Tuck. ex Hue. A phylogram based on an analysis of the nuclear large subunit rDNA (LSU) locus shows that Gibbosporina is instead a clade in a Pannariaceae branch referred to as the ‘Physma group’, a most unexpected addition to Pannariaceae dealt with by several previous studies. Genera assigned to this group have very contrasting general appearances. However, this diverse group shares distinctly ring-like thalline excipular margins; strongly amyloid internal ascus structures; well-developed perispores which have irregular gibbae and/or nodulose or acuminate apical extensions, but not verrucae; lacks TLC-detectable secondary compounds and have tropical distributions. Gibbosporina is the only tripartite genus in the group, with distinct, nodulose, placodioid, mini-fruticose to mini-foliose cephalodia with a high diversity of Nostoc cyanobionts. The cyanomorphs can apparently exist independently in some cases, although the apothecia on such cephalodia on a specimen from Réunion were unexpectedly found to belong to the chloromorph. The genus and related genera forming the ‘Physma group’ are probably evolutionarily old, and their weak affinity to the remaining part of Pannariaceae, concentrated in the Southern Hemisphere, is discussed. The genus includes 13 known species, and the generitype is Gibbosporina boninensis from the Japanese Ogasawara Islands, originally described as Psoroma boninense and recombined here. The following 12 species are described here as new to science, seven of them with molecular support in an LSU and ITS-based phylogram: Gibbosporina acuminata (Australia, the Philippines), G. amphorella (New Caledonia), G. bifrons (Malaysia, New Caledonia, the Philippines, Solomon Islands), G. didyma (Mauritius, Réunion), G. elixii (Australia), G. leptospora (Australia, Papua New Guinea), G. nitida (Australia, Papua New Guinea, the Philippines), G. mascarena (Mauritius, Réunion, Sri Lanka), G. papillospora (the Philippines), G. phyllidiata (Solomon Islands), G. sphaerospora (Australia, Indonesia, Malaysia, the Philippines, Samoa, and with Psoroma sphinctrinum var. endoxanthellum as a new synonym), and G. thamnophora (Australia and the Philippines). Except for the phyllidiate G. phyllidiata and for G. thamnophora which has cephalodia adapted for vegetative propagation, the species are all primarily fertile. A key for determining the species is provided.

Molecular inferences of three loci within a phylogenetic framework of a subset of the Pannariaceae confirm that the genus Kroswia is nested within the genus Fuscopannaria. The formal combination of the type species of Kroswia into Fuscopannaria is therefore made here, and Kroswia is reduced into synonymy with the latter genus.

Cephalodia were investigated on young and mature thalli of Lobaria pulmonaria. Cephalodia originate from contact between hyphae and cyanobacteria on the upper or lower cortex or, less frequently, in the apical zone. Young thalli were found to associate with cyanobacteria even in the anchoring zone. Cephalodia formed on the young thalli or the anchoring hyphae share the same phenotypic characteristics. In spite of being composed of paraplectenchymatous hyphae, the cortex of mature thalli preserves a considerable plasticity, enabling the formation of cephalodia. The cyanobacterial incorporation process begins with cortical hyphae growing out towards adjacent cyanobacterial colonies, enveloping them and incorporating them into the thallus. The incorporation process is the same on the upper and the lower cortex. Early stages of cephalodia are usually found in young lobes, whereas in the older parts of the thallus only mature cephalodia are found.

N2-fixation is an important mechanism in microbial mats of the McMurdo Ice Shelf as nitrogen sources are limited. Here we applied molecular analyses of the N2-fixing diversity in cyanobacterial dominated microbial mats in a meltwater pond, known as Orange Pond, on the McMurdo Ice Shelf. Phylogenetic analyses of nifH genes and nifH gene transcripts were performed in association with acetylene reduction assay measurements. Eighteen phylotypes with the highest similarities to cyanobacteria, firmicutes, beta-, gamma- and deltaproteobacteria, spirochaetes and verrumicrobia were identified. All cyanobacterial nifH phylotypes grouped solely in the genus Nostoc spp. Clone-library analysis of nifH gene transcripts only identified sequences with a highest match to Nostoc spp. and acetylene reduction activity was identified in the presence of light and absence of 3-(3,4-dichlorophenyl)-1,1-dimethyl urea. These molecular results indicate that a variety of bacterial phyla possess the ability to fix nitrogen. However, under the tested conditions the only organisms actively transcribing nifH genes were Nostoc spp. This underlines the importance of Nostoc for the nitrogen budget on the McMurdo Ice Shelf.

A new species of the Leptogium trichophorum group is described from Mt. Albert Edward in Papua New Guinea. A key to the related species, which are all found in SE Asia, is given. The new species appears to be rather local, and may prove to be endemic.

The horizontal and vertical distributions of cyanobacteria and algae on soil polygons on Signy Island were investigated. Soil chlorophyll concentrations increased from the centre to the edge of the polygons. Similar distributions of the non-motile genera, such as Pseudanabaena and Nostoc, were observed, whereas the motile taxa, Phormidium and Pinnularia, were evenly distributed across the polygon. Phormidium autumnale was the most widespread taxon, and other Oscillatoriaceae were also important, although large differences in community composition between polygons were observed. Most of the algal biomass was concentrated near the surface of the soil, although chlorophyll degradation products were found to depths of up to 8 cm. Examination of the soil profile by fluorescence microscopy indicated that a large proportion of the microflora occurred in the zone 0–1 mm below the surface, and scanning electron microscopy confirmed that few algae occurred on the soil surface. It is suggested that this may be a desiccation-avoidance strategy. Vertical migration of the motile microalgae to the soil surface was not observed in the field, but could be induced in the laboratory in the presence of excess water, although no diel cycle to this movement was observed.

Genetic diversity of green algal and cyanobacterial photobionts in Nephroma was examined by using nucleotide sequences of the ribosomal gene cluster. The lichens studied included both bipartite and tripartite species. There was very little variation in green algal-ITS sequences of N. arcticum and N. expallidum. Almost identical sequences were obtained from all thalli analysed and also from two tripartite Peltigera species. On the basis of SSU rDNA data the green algal photobionts of N. arcticum are closely related to the primary photobiont of P. britannica, and also to an endophytic alga of Ginkgo biloba. The SSU rDNA region of lichen-forming cyanobacteria was rather variable. A phylogenetic analysis indicated that the Nostoc specimens formed a monophyletic group and the strains were divided into two main groups. One clade included only cyanobionts of lichens, including those of all bipartite Nephroma species. The second group was genetically more heterogeneous and included mainly cyanobionts of terricolous cyanolichens, including those of both tripartite Nephroma species studied. The distinction between bi- and tripartite Nephroma species is significant as the mycobionts of tripartite species are not monophyletic. It implies that within Nephroma, evolutionary transitions between symbiosis types cannot have been achieved simply via an acquisition or loss of the green algal photobiont. As the Nostoc symbionts of bi- and tripartite species belong to different phylogenetic groups, an evolutionary change in green algal association has required a concurrent change in cyanobiont composition.

Patterns of photobiont diversity were examined in some Nostoc-containing lichens using the nucleotide sequence of the cyanobacterial tRNALeu (UAA) intron. Lichen specimens collected in northwestern USA were analysed and the sequence data were compared with tRNALeu(UAA) intron sequences previously obtained from lichens in northern Europe. Generally, it is the species identity of a lichen rather than the geographical origin of the specimen that determines the identity of the cyanobiont. Identical intron sequences were found in Peltigera membranacea specimens collected in Oregon (USA) and in Sweden, and very similar sequences were also found in Nephroma resupinatum thalli collected in Oregon and Finland. Furthermore, in mixed assemblages where two Peltigera species grew in physical contact with each other, the different lichen species housed different photobiont strains. There is however not a one-to-one relation between mycobiont and photobiont as some intron sequences were found in more than one lichen species, and different intron sequences were found in different samples of some lichen taxa. Peltigera venosa exhibited a higher level of photobiont diversity than any other lichen species studied, and several intron sequences could for the first time be obtained from a single thallus. It is not clear whether this is evidence of lower cyanobiont specificity, or reflects an ability to exhibit different degrees of lichenization with different Nostoc strains. In one specimen of P. venosa, which contained bipartite cyanosymbiodemes and tripartite, cephalodiate thalli, both thallus types contained the same intron sequence.

Drying of cells leads to damage resulting from crowding of cytoplasmic components, condensation of the nucleoid, increases in the Tm of membrane phase transitions, and imposition of stress upon cell walls. Prolonged desiccation leads to oxidation of proteins, DNA and membrane components through metal-dependent Fenton reactions, while Maillard reactions generate cross-linked products between the carbonyl groups of reducing sugars and the primary amines of nucleic acids and proteins. Although such damage restricts many organisms to aqueous environments, some, including many cyanobacteria, can tolerate the air-dried state for prolonged periods. Cyanobacteria in the Tintenstrich communities of exposed rock faces, Microcoleus and Lyngbya spp. in intertidal mats, chasmoendolithic Chroococcidiopsis spp. in the rocks of hot and cold deserts, and terrestrial epilithic crusts of Tolypothrix and Nostoc are examples that show a marked capacity to withstand the removal of their cellular water. For Nostoc commune, the mechanisms of desiccation tolerance reflect both simple and complex interactions at the structural, physiological and molecular levels.

The cyanobacterial symbionts in some Nostoc-containing lichens were investigated using the nucleotide sequence of the highly variable cyanobacterial tRNALeu (UAA) intron. When comparing different Nostoc-containing lichens, identical intron sequences were found in different samples of the same lichen species collected from two remote areas. This was true for all species where this comparison was made (Peltigera aphthosa (L.) Willd., P. canina (L.) Willd. and Nephroma arcticum (L.) Torss.). With one exception, a specific intron sequence was never found in more than one lichen species. However, for two of the species, Peltigera aphthosa and Nephroma arcticum, two different cyanobionts were found in different samples. By examining a P. aphthosa photosymbiodeme it could be shown that the same Nostoc is present in both bipartite and tripartite lobes of this lichen. It is thus possible for one cyanobiont/Nostoc to form the physiologically different symbioses that are found in bipartite and tripartite lichens. The connection between photobiont identity and secondary chemistry is discussed, as a correlation between differences in secondary chemistry and different cyanobionts/Nostocs in the species Peltigera neopolydactyla (Gyeln.) Gyeln. was observed. It is concluded that more knowledge concerning the photobiont will give us valuable information on many aspects of lichen biology.