Sequence variation among 22 isolates representing a global distribution of the prymnesiophyte genus Phaeocystis has been compared using nuclear-encoded 18S rRNA genes and two non-coding regions: the ribosomal DNA internal transcribed spacer 1 (ITS1) separating the 18S rRNA and 5·8S rRNA genes and the plastid ribulose-1,5-bisphosphate carboxylase/oxygenase (RUBISCO) spacer flanked by short stretches of the adjacent large and small subunits (rbcL and rbcS). 18S rRNA can only resolve major species complexes. The analysis suggests that an undescribed unicellular Phaeocystis sp. (isolate PLY 559) is a sister taxon to the Mediterranean unicellular Phaeocystis jahnii; this clade branched prior to the divergence of all other Phaeocystis species, including the colonial ones. Little divergence was seen among the multiple isolates sequenced from each colonial species complex. RUBISCO spacer regions are even more highly conserved among closely related colonial Phaeocystis species and are identical in Phaeocystis antarctica, Phaeocystis pouchetii and two warm-temperate strains of Phaeocystis globosa, with a single base substitution in two cold-temperate strains of P. globosa. The RUBISCO spacer sequences from two predominantly unicellular Phaeocystis isolates from the Mediterranean Sea and PLY 559 were clearly different from other Phaeocystis strains. In contrast, ITS1 exhibited substantial inter- and intraspecific sequence divergence and showed more resolution among the taxa. Distinctly different copies of the ITS1 region were found in P. globosa, even among cloned DNA from a single strain, suggesting that it is a species complex and making this region unsuitable for phylogenetic analysis in this species. However, among nine P. antarctica strains, four ITS1 haplotypes could be separated. Using the branching order in the ITS1 tree we have attempted to trace the biogeographic history of the dispersal of strains in Antarctic coastal waters.

In both field samples and cultures the total amount of sugar and of carbon in colonies of Phaeocystis globosa was correlated with colony surface area, suggesting a hollow structure. A conceptual model based on biochemical data and on the assumption that the mucus occurs as a layer of a fixed thickness, irrespective of colony size, predicts that the thickness of the layer is 7 μm. A confocal laser scanning microscope image of fluorescently labelled mucus confirmed this view of the colony structure. The measured contents of carbon and sugar per cell (including mucus) were constant for all colony sizes. Cells in laboratory cultures contained 122 pg C, which is twice the value for cells obtained at a field station in the North Sea (57 pg). In contrast, sugar per cell was higher in the field than in exponentially growing cultures. Therefore the percentage of sugar carbon relative to total carbon of colonies in the field was higher (19–35%) than that in cultures (10%). Highest values were found at low ambient nutrient concentrations, probably due to the presence of storage glucans in the cells that are produced under nutrient limitation. The functional role of Phaeocystis colonies in the pelagic system has to be re-evaluated because (i) biomass estimates have previously often been based on the assumption of a colony filled with mucus while in reality it is a hollow structure with an aqueous lumen, and (ii) in contrast to earlier reports it is shown that only a small amount of carbohydrate is needed to build the colony structure.