Although there are many glutamate receptors in the retina,
2-amino-4-phosphonobutyrate (L-AP4) is an agonist that acts selectively
at metabotropic glutamate receptors (mGluR6) of ON bipolar cells. We
explored the properties of agonists that activate this receptor. The
effects of various glutamate analogs on the b-wave of the
electroretinogram (ERG) were used as a measure of their activity.
Conformational comparisons among agonists suggest that ligands in an
extended conformation preferentially bind to the ON bipolar synaptic
receptor. But this property is insufficient to explain the selectivity
of mGluR6 because some inactive glutamate analogs could also match this
extended conformation. Comparative molecular field analysis (CoMFA) was
used to compare the electrostatic and steric potentials of agonists
with their action at the ON bipolar synapse. Steric potentials beneath
a plane defined by the three putative binding sites plays a key role in
determining agonist activity. The CoMFA model was used to predict the
activity of glutamate analogs and correlations between predicted and
measured activity support the model.