The eukaryotic nucleolus contains a diverse population
of small nucleolar RNAs (snoRNAs) that have been categorized
into two major families based on evolutionarily conserved
sequence elements. U14 snoRNA is a member of the larger,
box C/D snoRNA family and possesses nucleotide box C and
D consensus sequences. In previous studies, we have defined
a U14 box C/D core motif that is essential for intronic
U14 snoRNA processing. These studies also revealed that
nuclear proteins that recognize boxes C/D are required.
We have now established an in vitro U14 snoRNP assembly
system to characterize protein binding. Electrophoretic
mobility-shift analysis demonstrated that all the sequences
and structures of the box C/D core motif required for U14
processing are also necessary for protein binding and snoRNP
assembly. These required elements include a base paired
5′,3′ terminal stem and the phylogenetically
conserved nucleotides of boxes C and D. The ability of
other box C/D snoRNAs to compete for protein binding demonstrated
that the box C/D core motif-binding proteins are common
to this family of snoRNAs. UV crosslinking of nuclear proteins
bound to the U14 core motif identified a 65-kDa mouse snoRNP
protein that requires boxes C and D for binding. Two additional
core motif proteins of 55 and 50 kDa were also identified
by biochemical fractionation of the in vitro-assembled
U14 snoRNP complex. Thus, the U14 snoRNP core complex is
a multiprotein particle whose assembly requires nucleotide
boxes C and D.