An open hierarchical (manpower) system divided into a totally ordered set of k grades is discussed. The transitions occur only from one grade to the next or to an additional (k+1)th grade representing the external environment of the system. The model used to describe the dynamics of the system is a continuous-time homogeneous Markov chain with k+1 states and infinitesimal generator R = (rij) satisfying rij = 0 if i > j or i + 1 < j ≤ k (i, j = 1,…,k+1), the transition matrix P between times 0 and 1 being P = expR. In this paper, two-wave panel data about the hierarchical system are considered and the resulting fact that, in general, the maximum-likelihood estimated transition matrix cannot be written as an exponential of an infinitesimal generator R having the form described above. The purpose of this paper is to investigate when this can be ascribed to the effect of sampling variability.