The aim of this contribution is the presentation of the political conflicts between the Archbishop of Lima, Toribio Alfonso de Mogrovejo (1538–1606), together with his faithful collaborator the parish priest Alonso de Huerta, and the cathedral chapter. Though the chapter was a sort of senate or permanent council of the diocese clergy, it by no means acted as an institution involved in the missionary commitments of Archbishop Mogrovejo. On the contrary, its members rallied around against what they considered to be a violation of their economic privileges, and on several instances they denounced the Archbishop, as well as the parish priest Alonso de Huerta, arguing that they intruded in the internal rules of the chapter.