Let $F_{2^n}$ be the Frobenius group of degree $2^n$ and of order $2^n ( 2^n-1)$ with $n \ge 4$ . We show that if $K/\mathbb {Q} $ is a Galois extension whose Galois group is isomorphic to $F_{2^n}$ , then there are $\dfrac {2^{n-1} +(-1)^n }{3}$ intermediate fields of $K/\mathbb {Q} $ of degree $4 (2^n-1)$ such that they are not conjugate over $\mathbb {Q}$ but arithmetically equivalent over $\mathbb {Q}$ . We also give an explicit method to construct these arithmetically equivalent fields.