Contamination by heavy metals resulting from irrigation with wastewater is an important global concern, as it can lead to crop contamination, posing serious threats to human health. Despite the advances in bioremediation of soils, sustainable strategies that use beneficial microorganisms to reduce the accumulation of heavy metals in contaminated crops remain underexplored. The aim of this study was to evaluate the potential reduction of heavy metal concentration in different structures of bean plants cultivated in soils irrigated with untreated wastewater on an agricultural land located in Hidalgo, Mexico, through the inoculation of a ubiquitous soil fungus. Bean plants were inoculated with three Trichoderma spp. and distributed across eight treatments, with an additional untreated control group, following a random full design. The percentage of root colonization and concentration of heavy metals in the leaves, pods, grains, and soil were determined. The results revealed that root colonization exceeded 75%. The treatments T. harzianum + T. asperellum and T. harzianum with 3 × 106 spores ml−1 showed the greatest decrease in Cd (64.7%) and Pb (66.1%) concentrations in the grains. T. viride with 2 × 106 spores ml−1 was the most effective treatment for copper reduction (72.9%) in grains; T. harzianum with 3 × 106 spores ml−1 showed the best performance for chromium reduction (75.7%), which was below the detection limit in leaves. In conclusion, inoculation of bean plants with Trichoderma spp. effectively reduced the accumulation of heavy metals. Future research in this area could contribute to the development of sustainable strategies to mitigate heavy metal contamination in agricultural ecosystems, thereby promoting food and environmental safety.

Urban inhabitants spend upwards of 90% of their time indoors where building design and mechanical air-handling systems negatively impact air quality, microbiome diversity and health outcomes. Urban bioremediation infrastructure designed to improve indoor environmental quality by drawing air through photosynthesizing plants and metabolically diverse rhizospheres have been investigated since the 1960s; however, in-depth analysis of the potential impacts on indoor environments is required: (1) although recent evidence has illustrated human microbiome alteration and associated health benefits related to exposure to green wall systems, the mechanism(s) of diversification have not yet been established, (2) microbial metabolism and airborne chemical dynamics are extraordinarily complex and hypotheses pertaining to rhizosphere microorganisms metabolizing pollutants require more attention. To explore these areas, we applied a shotgun metagenomic approach to quantify microbial diversity and establish preliminary metabolic profiles within active green wall modules spanning a range of growth media and plant selections. Results indicate that fundamental design decisions, including hydroponic vs. organic growth media, support rhizosphere microbiomes with distinct diversity and metabolic profiles which could impact system performance. The described relationships indicate fundamental green infrastructure design represents an opportunity to “grow” indoor microbial diversity and metabolisms with potential benefits for human pollutant exposure and health outcomes.

Fossil fuels are of utmost importance to the world we live in today. However, their use can cause major impacts on the environment, especially on water resources. In this regard, algae have been intensively used as a strategy for remediation and monitoring of environmental pollution due to its efficient absorption of contaminants. In this work, samples of seaweed collected in Niterói/RJ—contaminated with kerosene and diesel—were analyzed by radiocarbon (14C) accelerator mass spectrometry (AMS) and by n-alkane quantification with gas chromatography to evaluate bioaccumulation in function of the dosage of contaminants. The biogenic content measured by radiocarbon analysis resulted in 95.6% for algae contaminated with 10 mL of kerosene and 67.6% for algae contaminated with 10 mL of diesel. The maximum intensity of n-C17 n-alkane in algae with 5 mL, 10 mL, and 15 mL of diesel was 768.2, 1878.1, and 5699.2 ng.g-1, respectively. While the maximum concentration of n-C27 in algae with 5 mL, 10 mL and 15 mL of kerosene was 3.3, 35.9, and 150.3 ng.g-1. We concluded that, for both contaminants, their incorporation into algae increases as the contamination dosage increases, making this methodology an effective technique for monitoring and remediation of urban aquatic ecosystems.

This study focused on the ability of the Antarctic bacterium Rhodococcus sp. strain AQ5-14 to survive exposure to and to degrade high concentrations of phenol at 0.5 g l-1. After initial evaluation of phenol-degrading performance, the effects of salinity, pH and temperature on the rate of phenol degradation were examined. The optimum conditions for phenol degradation were pH 7 and 0.4 g l-1 NaCl at a temperature of 25°C (83.90%). An analysis using response surface methodology (RSM) and the Plackett-Burman design identified salinity, pH and temperature as three statistically significant factors influencing phenol degradation. The maximum bacterial growth was observed (optical density at 600 nm = 0.455), with medium conditions of pH 6.5, 22.5°C and 0.47 g l-1 NaCl in the central composite design of the RSM experiments enhancing phenol degradation to 99.10%. A central composite design was then used to examine the interactions among these three variables and to determine their optimal levels. There was excellent agreement (R2 = 0.9785) between experimental and predicted values, with less strong but still good agreement (R2 = 0.8376) between the predicted model values and those obtained experimentally under optimized conditions. Rhodococcus sp. strain AQ5-14 has excellent potential for the bioremediation of phenol.

Bioremediation has been proposed as a means of dealing with oil spills on the continent. However, the introduction of non-native organisms, including microbes, even for this purpose would appear to breach the terms of the Environmental Protocol to the Antarctic Treaty. This study therefore aimed to optimize the growth conditions and diesel degradation activity of the Antarctic native bacteria Arthrobacter spp. strains AQ5-05 and AQ5-06 through the application of a one-factor-at-a-time (OFAT) approach. Both strains were psychrotolerant, with the optimum temperature supporting diesel degradation being 10–15°C. Both strains were also screened for biosurfactant production and biofilm formation. Their diesel degradation potential was assessed using Bushnell–Haas medium supplemented with 0.5% (v/v) diesel as the sole carbon source and determined using both gravimetric and gas chromatography and mass spectrophotometry analysis. Strain AQ5-06 achieved 37.5% diesel degradation, while strain AQ5-05 achieved 34.5% diesel degradation. Both strains produced biosurfactants and showed high biofilm adherence. Strains AQ5-05 and AQ5-06 showed high cellular hydrophobicity rates of 73.0% and 81.5%, respectively, in hexadecane, with somewhat lower values of 60.5% and 70.5%, respectively, in tetrahexadecane. Optimized conditions identified via OFAT increased diesel degradation to 41.0% and 47.5% for strains AQ5-05 and AQ5-06, respectively. Both strains also demonstrated the ability to degrade diesel in the presence of heavy metal co-pollutants. This study therefore confirms the potential use of these cold-tolerant bacterial strains in the biodegradation of diesel-polluted Antarctic soils at low environmental temperatures.

In this Research Communication we investigate potential correlations between key bacterial groups and nutrient removal efficiency in an Intermittently Aerated Sequencing Batch Reactor (IASBR) treating synthetic dairy processing wastewater. Reactor aeration rates of 0·6 and 0·4 litre per minute (LPM) were applied to an 8 l laboratory scale system and the relative impacts on IASBR microbial community structure and orthophosphate (PO4-P) and ammonium (NH4-N) removal efficiencies compared. Aeration at 0·6 LPM over several sludge retention times (SRTs) resulted in approximately 92% removal efficiencies for both PO4-P and NH4-N. Biomass samples subjected to next-generation sequencing (NGS), 16S rRNA profiling revealed a concomitant enrichment of Polaromonas under 0·6 LPM conditions, up to ~50% relative abundance within the reactor biomass. The subsequent shift in reactor aeration to 0·4 LPM, over a period of 3 SRTs, resulted in markedly reduced nutrient removal efficiencies for PO4-P (50%) and NH4-N (45%). An 85·7% reduction in the genus level relative abundance of Polaromonas was observed under 0·4 LPM aeration conditions over the same period.

This study focused on whether the presence of clay minerals (montmorillonite and kaolinite) in marine or coastal environments contaminated with high concentrations of heavy-oil spills were able to support the growth of hydrocarbon degraders to enable bioremediation. The bacterial growth experiment utilizing ~150 g/l of heavy oil (from the Nakhodka oil spill) was conducted with 1500 mg/l of montmorillonite or kaolinite. Bacterial strain Pseudomonas aeruginosa (isolated from Atake seashore, Ishikawa Prefecture, Japan), capable of degrading heavy oil, was employed in combination with other hydrocarbon degraders inhabiting the heavy oil and seawater (collected from the Sea of Japan). The interactions among microbial cells, clay minerals and heavy oil were studied. Both clays were capable of promoting microbial growth and allowed microorganisms to proliferate (to a greater degree than in a control sample which contained no clay) in an extremely high concentration of heavy oil. Observation by transmission electron microscopy of the clay-oil-cell complexes showed that microbial cells tended to be bound primarily on the edges of the clays. X-ray diffraction analysis showed that the clay-oil and clay-oil-cell complexes involved the adsorption of microbial cells and/or heavy oil on the external surfaces of the clays. How do the interactions among clay minerals, microbial cells and heavy oil contribute to environmental factors influencing the bioremediation process? To our knowledge, there are no previous reports on the use of clay minerals in the bioremediation of the Nakhodka oil spill in combination with biofilm formation.

The ability of montmorillonite to mitigate the toxic effect of heavy oil from the Nakhodka oil spill, by growth of hydrocarbon-degrading bacteria and enable bioremediation was studied. Montmorillonite enhanced the bacterial growth significantly (P < 0.05) in the main treatment containing heavy oil+bacteria+montmorillonite (OBM), because the specific growth rate (μ) was greater than that in the biotic control treatment containing heavy oil+bacteria (OB). Significant amounts of Si and Al (major constituents of montmorillonite) were not released in the aqueous phase over the ∽24-day experiment (P > 0.05). Transmission electron microscopic observation showed that the hydrocarbon-degrading bacterial cells were covered and encrusted with montmorillonite particles. Scanning transmission electron microscopy coupled with energy dispersive X-ray spectroscopy (STEM-EDS) also showed that the surrounding of the bacterial cells was frequently rich in Si but not in Al. Fourier transform infrared (FTIR) spectroscopy indicated that the heavy oil-bacterial cell-montmorillonite particle complex retained the composition of both water and heavy oil. X-ray powder diffractrometery (XRD) analysis revealed that heavy oil and heavy oil-bacteria did not change the basal spacing of montmorillonite over a period of 24 days. The enhancement of hydrocarbon-degrading bacterial growth is attributed to montmorillonite likely serving as both bacterial growth-supporting carrier and protective outer layer against high concentrations of heavy oil that inhibit growth. These results shed light on the interactions in oil-bacteria-clay complexes and could potentially be used in marine oil spill bioremediation.

In the Earth’s lithosphere, fungi are of fundamental importance as decomposer organisms, animal and plant pathogens and symbionts (e.g. lichens and mycorrhizas), being ubiquitous in sub-aerial and subsoil environments. The ability of fungi to interact with minerals, metals, metalloids and organic compounds through biomechanical and biochemical processes, makes them ideally suited as biological weathering agents of rock and building stone. They also play a fundamental role in biogeochemical cycling of nutrients, (e.g. C, N, P and S) and metals (e.g. Na, Mg, Ca, Mn, Fe, Cu, Zn, Co and Ni) essential for the growth of living organisms in the biosphere. In addition they play an integral role in the mobilization and immobilization of non-essential metals (e.g. Cs, Al, Cd, Hg and Pb). Most studies on mineral-microbe interactions and microbial involvement in geological processes have concentrated on bacteria and archaea (Prokaryota): fungi (Eukaryota) have, to a certain extent, been neglected. This article addresses the role of fungi in geomicrobiological processes, emphasizing their deteriorative potential on rock, building stone and mineral surfaces and involvement in the formation of secondary mycogenic minerals. Such roles of fungi are also of importance for the global carbon reservoir and have potential biotechnological applications, e.g. in the bioremediation of xenobiotic-, metal- and/or radionuclide-contaminated soils and wastes, and metal/radionuclide recovery.

The bioremediation of Antarctic soils is a challenge due to the harsh conditions found in this environment. To characterize better the effect of total petroleum hydrocarbon (TPH) concentrations on bacterial, archaeal and microeukaryotic communities in low (LC) and high (HC) hydrocarbon-contaminated soil samples from the Maritime Antarctic clone libraries (small-subunit rRNA genes) were constructed. The results showed that a high concentration of hydrocarbons resulted in a decrease in bacterial and eukaryotic diversity; however, no effect of the TPH concentration was observed for the archaeal community. The HC soil samples demonstrated a high relative abundance of bacterial operational taxonomic units (OTUs) affiliated with unclassified group TM7 and eukaryotic OTUs affiliated with unclassified fungi from Pezizomycotina subphyla. Chemical analyses of the LC and HC soil samples revealed the presence of negligible amounts of nitrogen, thereby justifying the use of biostimulation to remediate these Antarctic soils. Microcosm experiments showed that the application of fertilizers led to an increase of up to 27.8% in the TPH degradation values. The data presented here constitute the first step towards developing the best method to deploy bioremediation in Antarctic soils and provide information to indicate an appropriate action plan for immediate use in the case of new accidents.

Bioaugmentation is a controversial strategy. In this work, the effect of the inoculum size and the absence of natural microflora on the efficiency of hydrocarbon removal were studied. Two levels of inoculum (106 and 109 CFU g-1) were applied to soil microcosms containing sterile (S6 and S9) and non-sterile (NS6 and NS9) oil contaminated Antarctic soil. Community controls (CC) and biostimulated autochthonous microflora (BAM) were also included. Total heterotrophic aerobic (THAB) and hydrocarbon degrading (HDB) bacteria as well as total petroleum hydrocarbons (TPH) were analysed. At day 0, THAB and HDB counts (CFU g-1) showed no differences among CC, BAM and NS6 but significantly higher values were observed in NS9 and S9. At day 60, three different levels of HDB were observed. The lower level was represented by CC (106 CFU g-1), a second group (5 x 107 CFU g-1) was represented by BAM, NS6, NS9 and S6, and the third level was constituted by S9 (1 x 109 CFU g-1). TPH values at day 60 decreased significantly in all systems excluding the controls. NS6, NS9, S6 and S9 were not different from those corresponding to BAM. Results suggest that the bioaugmentation of a chronically diesel fuel-contaminated Antarctic soil is unlikely to be profitable or beneficial.

Three hydrocarbon-degrading Rhodococcus strains isolated from polluted Antarctic soils proved to be closely related despite their different origins. Strains had a similar hydrocarbon degradation pattern and optimum growth temperature ranged between 25ºC and 30ºC, showing that strains are psychrotolerant but not psychrophiles. Specific growth rate on rich media ranged between 0.12 and 0.21 h−1, higher than those observed on hydrocarbons as carbon source. Results suggest that in Antarctic contaminated soils, closely related Rhodococcus strains are present and could play an important role in decontamination. Microcosm systems showed that, although the natural microflora respond significantly to the pollutants, bioaugmentation with Rhodococcus strain (ADH), improved biodegradation either alone or mixed with a hydrocarbon-degrading Acinetobacter strain. In comparison with microcosm where only ADH was inoculated, a non-significant decrease in hydrocarbon concentration was observed when ADH was inoculated as mixed culture with a previously tested strain. Pollutants dramatically reduced bacterial groups in soils resulting in a dominance of Pseudomonas. Microcosms showed that when natural microflora has no previous history of exposure to the pollutants, bioaugmentation with autochthonous strains improves degradation of the contaminants. The positive response of the native bacteria to the pollutants leaves the question open as to whether bioaugmentation is necessary when soils have a long previous exposure to hydrocarbons.

Coastal ecosystems in the Arabian Gulf region are under increasing pressures from hostilities and other developmental activities; the region has a long history of crude-oil pollution. Because of the high ambient temperature, oil deposited along the coastline or inland evaporates, leaving a semi-solid tar. In Qatar, to clean up the polluted sites, the deposited tar is stripped off and dumped in the coastal marshes as confluent dome-shaped piles. Flowering plant colonization of tar-piles is described here as a chrono-sequence, ranging in age from 2 to 14 years. The successional patterns in vegetation, seed bank, species diversity and plant growth were predicted from tar-pile disturbances with different ages and tar content. The success of natural plant colonization and the establishment of plant communities on the tar-pile disturbances depend upon: (1) age of the tar-pile disturbances, (2) tar content of the piles and soil physico-chemical properties, (3) soil moisture content, (4) structure of plant communities in the surrounding landscape, (5) size of the disposal sites and the method of dumping, and (6) prevailing environmental conditions. A management and restoration framework is proposed to optimize the natural recolonization of tar-piles. To retain these ecosystems in a self-sustaining state, some native plant species might be used including: Aeloropus lagopoides, Aizoon canariense, Anabasis setifera, Fagonia indica, Mesembryanthemum nodiflorum, Reichardia tingitana, Salsola imbricata, Suaeda aegyptiaca, Senecio glaucus, Sporobolus arabicus, Zygophyllum quatarense, and Zygophyllum simplex. To clarify the biological and chemical aspects of the problem, further research on the chemistry of tar-polluted soil and its vegetation in relation to the food web is needed.

Salinity is widely perceived to have severe effects on farmers in Pakistan. However, to date there is little direct evidence on how salinity specifically affects farm operations and the patterns of agricultural activity, and how farmers seek to overcome the effects of salinity. The purpose of this study was to develop an understanding of the causes of soil salinity and to consider possible remedial actions whereby farmers might reduce its adverse effects. Correlation analysis was used to determine whether farmers responded to soil salinity in identifiable patterns of socioeconomic activity and behavior. Throughout these analyses, it was assumed that salinity was the primary force driving the farming systems. Soil salinity was found to pose real constraints to agricultural productivity and the economic livelihoods of Pakistani farmers. With few notable exceptions, no discernible patterns in responses to soil salinity have emerged. Aside from the more traditional and costly methods for dealing with the problem, no new technologies to combat soil salinity have been widely disseminated, due to socioeconomic limitations of most farmers and general lack of awareness. Yet, the data indicate that in order to increase agricultural productivity, alternative technologies are needed, such as trees and shrubs to lower the water table, more effective water management to prevent waterlogging, and salt-tolerant and -resistant strains of edible crops. Without these measures, it is likely the situation will worsen in the coming years.