Historically cormorants have come into direct conflict with fisheries because of their feeding habits. The Socotra cormorant Phalacrocorax nigrogularis is a regionally endemic seabird restricted to the Arabian Gulf and coastal Oman, and is categorized as Vulnerable on the IUCN Red List. The species is perceived as being detrimental to local fisheries and is therefore persecuted. We studied the diet and estimated the number of Socotra cormorants breeding on Siniya Island, Umm Al Quwain, United Arab Emirates, to determine their impact on local fisheries. Regurgitated fish loads were collected during the breeding seasons of 2011–2012 and 2012–2013, and the biomass of fish consumed by the Socotra cormorant population was estimated. The diet comprised seven species of fish, with sailfin flying fish Parexocoetus mento and blue-stripe sardine Herklotsichthys quadrimaculatus dominating in 2011–2012 and anchovies (Encrasicholina spp.) dominating in 2012–2013. Biomass of fish loads was higher in 2011–2012 compared to 2012–2013, although mean biomass of fish loads did not differ. Dominant fish species in the cormorant's diet were either used as baitfish or were non-target species in the fisheries. The low overlap between the diet of the Socotra cormorant and the fish landed by the fisheries suggests that the cormorant's impact on fisheries is minimal. Conservation strategies to protect the birds and their feeding areas could safeguard populations of this species from further declines.