NMR spectroscopy was used to search for mechanistically
significant differences in the local mobility of the main-chain
amides of Bacillus circulans xylanase (BCX) in
its native and catalytically competent covalent glycosyl-enzyme
intermediate states. 15N T1,
T2, and 15N{1H}
NOE values were measured for ~120 out of 178 peptide groups
in both the apo form of the protein and in BCX covalently
modified at position Glu78 with a mechanism-based
2-deoxy-2-fluoro-β-xylobioside inactivator.
Employing the model-free formalism of Lipari
and Szabo, the measured relaxation parameters were used
to calculate a global correlation time (τm)
for the protein in each form (9.2 ± 0.2 ns for apo-BCX;
9.8 ± 0.3 ns for the modified protein), as well
as individual order parameters for the main-chain NH bond
vectors. Average values of the order parameters for the
protein in the apo and complexed forms were S2
= 0.86 ± 0.04 and S2 = 0.91
± 0.04, respectively. No correlation is observed
between these order parameters and the secondary structure,
solvent accessibility, or hydrogen bonding patterns of
amides in either form of the protein. These results demonstrate
that the backbone of BCX is well ordered in both states
and that formation of the glycosyl-enzyme intermediate
leads to little change, in any, in the dynamic properties
of BCX on the time scales sampled by 15N-NMR
relaxation measurements.