The effect of the potential antidiabetic drug (-)(S)-3-isopropyl
4-(2-chlorophenyl)-1,4-dihydro-1-ethyl-2-methyl-pyridine-3,5,6-tricarboxylate
(W1807) on the catalytic and structural properties of glycogen
phosphorylase a has been studied. Glycogen phosphorylase
(GP) is an allosteric enzyme whose activity is primarily
controlled by reversible phosphorylation of Ser14 of the
dephosphorylated enzyme (GPb, less active, predominantly
T-state) to form the phosphorylated enzyme (GPa, more active,
predominantly R-state). Upon conversion of GPb to GPa,
the N-terminal tail (residues 5–22), which carries
the Ser14(P), changes its conformation into a distorted
310 helix and its contacts from intrasubunit
to intersubunit. This alteration causes a series of tertiary
and quaternary conformational changes that lead to activation
of the enzyme through opening access to the catalytic site.
As part of a screening process to identify compounds that
might contribute to the regulation of glycogen metabolism
in the noninsulin dependent diabetes diseased state, W1807
has been found as the most potent inhibitor of GPb
(Ki = 1.6 nM) that binds at the allosteric
site of T-state GPb and produces further conformational changes,
characteristic of a T′-like state. Kinetics show W1807 is a
potent competitive inhibitor of GPa (-AMP) (Ki
= 10.8 nM) and of GPa (+1 mM AMP) (Ki
= 19.4 μM) with respect to glucose 1-phosphate and
acts in synergism with glucose. To elucidate the structural
features that contribute to the binding, the structures
of GPa in the T-state conformation in complex with glucose
and in complex with both glucose and W1807 have been determined
at 100 K to 2.0 Å and 2.1 Å resolution, and
refined to crystallographic R-values of 0.179
(Rfree = 0.230) and 0.189 (Rfree
= 0.263), respectively. W1807 binds tightly at the allosteric
site and induces substantial conformational changes both
in the vicinity of the allosteric site and the subunit
interface. A disordering of the N-terminal tail occurs,
while the loop of chain containing residues 192–196
and residues 43′-49′ shift to accommodate the
ligand. Structural comparisons show that the T-state GPa-glucose-W1807
structure is overall more similar to the T-state GPb-W1807
complex structure than to the GPa-glucose complex structure,
indicating that W1807 is able to transform GPa to the T′-like
state already observed with GPb. The structures provide
a rational for the potency of the inhibitor and explain
GPa allosteric inhibition of activity upon W1807 binding.