In trypanosomatids, the majority of the guide (g)
RNAs that provide the information for U-insertion/deletion
RNA editing are encoded by minicircles that are catenated
into large networks. In contrast, in the distantly related
cryptobiid Trypanoplasma borreli, gRNA genes appear
to reside in large 180-kb noncatenated DNA circles. To
shed light on the evolutionary history and function of
the minicircle network, we have analyzed minicircle organization
in the free-living bodonid Bodo saltans, which
is more closely related to trypanosomatids than T.
borreli. We identified 1.4-kb circular DNAs as the
B. saltans equivalent of minicircles via sequence
analysis of 4 complete minicircles, 14 minicircle fragments,
and 14 gRNAs. We show that each minicircle harbors two
gRNA gene cassettes of opposite polarity residing in variable
regions of about 200 nt in otherwise highly conserved molecules.
In the conserved region, B. saltans minicircles
contain a putative bent helix sequence and a degenerate
dodecamer motif (CSB-3). Electron microscopy, sedimentation,
and gel electrophoresis analyses showed no evidence for
the existence of large minicircle networks in B. saltans,
the large majority of the minicircles being present as
circular and linear monomers (85–90%) with small
amounts of catenated dimers and trimers. Our results provide
the first example of a kinetoplastid species with noncatenated,
gRNA gene-containing minicircles, which implies that the
creation of minicircles and minicircle networks are separate
evolutionary events.