Overspecification or excess margin in a design can enhance its ability to absorb changes and uncertainty, but also deteriorates performance criteria such as weight and cost. This paper shows how the Margin Value Method (article in review) can be applied in conjunction with CAE tools such as FEA to quantify excess margin where a design is too complex for algebraic analysis. This new application context for the MVM is illustrated using a case study of a flange coupling design, in which topology optimisation is used within the MVM to identify opportunities for design improvement.