Native state hydrogen exchange of cold shock protein
A (CspA) has been characterized as a function of the denaturant
urea and of the stabilizing agent trimethylamine N-oxide
(TMAO). The structure of CspA has five strands of β-sheet.
Strands β1–β4 have strongly protected amide
protons that, based on experiments as a function of urea,
exchange through a simple all-or-none global unfolding
mechanism. By contrast, the protection of amide protons
from strand β5 is too weak to measure in water. Strand
β5 is hydrogen bonded to strands β3 and β4,
both of which afford strong protection from solvent exchange.
Gaussian network model (GNM) simulations, which assume
that the degree of protection depends on tertiary contact
density in the native structure, accurately predict the
strong protection observed in strands β1–β4
but fail to account for the weak protection in strand β5.
The most conspicuous feature of strand β5 is its low
sequence hydrophobicity. In the presence of TMAO, there
is an increase in the protection of strands β1–β4,
and protection extends to amide protons in more hydrophilic
segments of the protein, including strand β5 and the
loops connecting the β-strands. TMAO stabilizes proteins
by raising the free energy of the denatured state, due
to highly unfavorable interactions between TMAO and the
exposed peptide backbone. As such, the stabilizing effects
of TMAO are expected to be relatively independent of sequence
hydrophobicity. The present results suggest that the magnitude
of solvent exchange protection depends more on solvent
accessibility in the ensemble of exchange susceptible conformations
than on the strength of hydrogen-bonding interactions in
the native structure.