Protozoan parasites are fearsome pathogens responsible for a
substantial proportion of human mortality, morbidity, and economic
hardship. The principal disease agents are members of the orders
Apicomplexa (Plasmodium, Toxoplasma, Eimeria) and Kinetoplastida
(Trypanosomes, Leishmania). The majority of humans are at risk from
infection from one or more of these organisms, with profound effects on
the economy, social structure and quality of life in endemic areas;
Plasmodium itself accounts for over one million deaths per annum, and
an estimated 4 × 107 disability-adjusted life years
(DALYs), whereas the Kinetoplastida are responsible for over 100,000
deaths per annum and 4 × 106 DALYs. Current control
strategies are failing due to drug resistance and inadequate
implementation of existing public health strategies. Trypanosoma
brucei, the African Trypanosome, has emerged as a favored model
system for the study of basic cell biology in Kinetoplastida, because
of several recent technical advances (transfection, inducible
expression systems, and RNA interference), and these advantages,
together with genome sequencing efforts are widely anticipated to
provide new strategies of therapeutic intervention. Here we describe a
suite of methods that have been developed for the microscopic analysis
of T. brucei at the light and ultrastructural levels, an
essential component of analysis of gene function and hence
identification of therapeutic targets.