Our aim was to disentangle the effects of different heat sources and the non-thermal properties of the substrate in the microhabitat choices of two lizard species living in savanna habitats of central-western Brazil: the teiid Ameivula aff. ocellifera (N = 43) and the tropidurid Tropidurus oreadicus (N = 23). To this end, a mixed structural resource selection function (mixed-SRSF) approach was used, modelling the probability of finding a lizard on a certain microhabitat based on environmental variables of used and simultaneously available places. First, we controlled for the effects of solar radiation, convection and the physical thermal properties of the substrate on substrate temperature. Then we assessed the effects of solar radiation, convection, conduction and the non-thermal properties of the substrate in the probability of use of a certain microhabitat. Results confirmed that substrate temperature was mediated by: air convection > solar radiation > physical thermal properties of the substrates. Moreover, the mixed-SRSF revealed that direct solar radiation and the non-thermal properties of the substrates were the only drivers of microhabitat selection for both species, with approximately the same strength. Our novel approach allowed splitting of the effect of different mechanisms in the microhabitat selection of lizards, which makes it a powerful tool for assessing the conformation of the interactions between different environmental variables mediating animal behaviour.