The rocky intertidal communities of Ireland contain a mix of cold- and warm-adapted species, however the spatial distribution of these communities has not been investigated in a systematic way. Based on a benthic community dataset collected in 2003 at 63 sites, several statistical analyses were combined with the aims of (i) detecting groups of similar communities and their spatial arrangement, (ii) relating these groups to environmental factors and (iii) identifying the species that drive the different community groups. Sørensen's index suggested two marine community groups, one of the east and south-east (termed ‘east’) and the other in the west, south-west and north (termed ‘west’). A second partition based on combined wave exposure and sea surface chlorophyll comprised four groups, as did a further partition based on combined sea surface and air temperatures. The spatial arrangement of wave height plus chlorophyll conditions agreed reasonably well with the binary marine community partition, but the temperature partition did not. The ‘east’ community appeared to be associated with low wave height and chlorophyll conditions. The species that were most influential to the ‘east’ community were Balanus crenatus, Austrominius modestus and Fucus vesiculosus. The ‘west’ sites were associated with high wave height/low chlorophyll (with some variation in this due to local shelter) and the species Paracentrotus lividus, Chthamalus stellatus, Alaria esculenta and Himanthalia elongata. A longitudinal pattern rather than one associated with latitude was evident in this marine community and local drivers rather than temperature clines appeared most important for the dominant community patterns.

Blue copper proteins are type-I copper-containing redox proteins whose role is to shuttle electrons from an electron donor to an electron acceptor in bacteria and plants. A large amount of experimental data is available on blue copper proteins; however, their functional characterization is hindered by the complexity of redox processes in biological systems. We describe here the application of a semiquantitative method based on a comparative analysis of molecular interaction fields to gain insights into the recognition properties of blue copper proteins. Molecular electrostatic and hydrophobic potentials were computed and compared for a set of 33 experimentally-determined structures of proteins from seven blue copper subfamilies, and the results were quantified by means of similarity indices. The analysis provides a classification of the blue copper proteins and shows that (1) comparison of the molecular electrostatic potentials provides useful information complementary to that highlighted by sequence analysis; (2) similarities in recognition properties can be detected for proteins belonging to different subfamilies, such as amicyanins and pseudoazurins, that may be isofunctional proteins; (3) dissimilarities in interaction properties, consistent with experimentally different binding specificities, may be observed between proteins belonging to the same subfamily, such as cyanobacterial and eukaryotic plastocyanins; (4) proteins with low sequence identity, such as azurins and pseudoazurins, can have sufficient similarity to bind to similar electron donors and acceptors while having different binding specificity profiles.