The present study aimed at estimating the characteristics of the Ascophyllum nodosum stands along the coast of Brittany, France. Although both an ecologically and economically important macroalga on sheltered rocky shores of the North Atlantic, no study has simultaneously dealt with the variability of the densities, lengths and biomasses of A. nodosum together with a description of its associated algal and animal diversity. There were significant differences in mean lengths and variations in the length–population structures between sites. However, the biomasses and densities showed no significant differences. The biomasses are amongst the highest ones estimated over the entire species distribution. The algal and animal assemblages were typical of A. nodosum zones, but only the identity composition of the algal communities seemed to reflect site differences in environmental forces. The biomasses measured in the present study should help improve future macroalgae biomass and metabolism estimates on regional or global scales. Finally, the data will provide a reference state for future studies on the responses of fucoid canopies to environmental changes.

Seagrass beds are common features of coastal ecosystems worldwide, and their associated infauna are often more productive and diverse than in unvegetated habitats. Little is known, however, about the ecology of meiofaunal communities living in seagrass sediments. We compared the abundance and biomass of sediment meiofauna inside and outside an intertidal Zostera muelleri bed in southern New Zealand to assess the impact of seagrass cover on meiofaunal distribution. Nematode community structure, diversity, and feeding groups were also compared between habitats and sediment depths (0–2, 2–5 and 5–10 cm) to evaluate the effect of seagrass on nematode communities. Meiofaunal biomass was significantly higher inside than outside the Z. muelleri bed, but secondary productivity inside the bed is likely to have been limited by the availability of labile organic matter. There were significant differences in nematode community structure between unvegetated, sparsely vegetated, and densely vegetated sites (102 m scale), as well as between sediment depths (cm scale). No significant differences were found in depth-integrated (0–10 cm) nematode diversity between sites, but vertical gradients in diversity differed between vegetated and unvegetated sites. Epistrate feeders were the most common feeding group in unvegetated sediments whereas most feeding groups were common inside the seagrass bed. Findings from this study indicate that seagrass beds can have a marked impact on infaunal structure and function over small spatial scales through their effect on sediment characteristics and organic matter input. Some unexpected trends observed in the present study, i.e. low meiofaunal biomass at the vegetated sites, and lower abundance of copepods inside than outside the seagrass bed, suggest that the nature of seagrass–invertebrate interactions may depend on habitat characteristics and the identity and ecology of species considered.

Surveys conducted in the south-western Dominican Republic showed that the penshell Pinna carnea is a consistent component of seagrass beds and is absent in adjacent sandflats. Population densities were low (0.012–0.076·m−2) and the size–structure skewed towards large individuals. Trials with different types of substrata in caged spat collectors, involving a combination of sand, seagrass blades and roots, and an artificial treatment by itself, indicated no settlement preference for any of the substrata tested. Comparison of additional spat collectors (caged and uncaged) indicated high predation losses (84%) for recently settled penshells. Experiments with penshells measuring 10–30, 50–70 and 90–110 mm (anterior to posterior dorsal tip) transplanted to plots in a seagrass bed and sandflat showed that predation losses decreased with increasing size and were much less in seagrass than in the sandflat. In 10-day trials, survival in the three size-groups was 27-fold greater in the seagrass bed than on the sandflat. During 3-day trials in the sandflat, survival increased from 6% for 50–100 mm penshells to 93% for 150–170 mm penshells. At the end of 100-day trials, during which the study area was subjected to Hurricane Dennis, the only surviving penshells were large individuals (90–110 mm) that had been transplanted to the seagrass bed. All individuals transplanted to the sandflat went missing. Growth measurements showed that small penshells grow rapidly (up to 2.2 mm·d−1), but the growth rate drops markedly at ~150 mm. Rapid juvenile growth may be a strategy for reducing the period of high vulnerability to predators. The high proportion of large individuals in the population likely represents the accumulation of successive recruitments as growth slows in older penshells. Pinna carnea is mainly restricted to seagrass beds because they provide more protection from predators than adjacent habitats. Moreover, the consolidation of sediments in seagrass beds by roots and algal rhizoids provides a degree of protection from physical disturbances such as hurricanes. The advantages provided by the seagrass habitat come at a cost because we detected a mortality factor in the seagrass bed (possibly related to the ~3-fold higher silt load) that was absent on the sandflat.

For studying community structure and biodiversity of macrofauna, seasonal samplings were carried out along three different depths (5, 15 and 30 m) in four transects (12 stations) at Noor coast during 2005. Four higher taxa were determined. Polychaeta was the dominant group comprising 96.61 of the total individuals, followed by Bivalvia 1.35%, Oligochaeta 1.15% and Amphipoda 0.87%. Of the six encountered species, the polychaete, Streblospio gynobranchiata accounted for 84.95 of the total population. Also, Tubificoides fraseri was observed in the Caspian Sea for the first time. During this study, density of macrofauna increased with depths, total organic matter and percentage of silt–clay. The highest density was obtained in winter and the lowest was observed in summer. Maximum diversity, richness, and evenness were obtained, 0.91, 1.05 and 0.88, respectively. Also, multivariate analysis separated differences of density between seasons and depths.

In the absence of chemical or physical gradients, random displacement of organisms can result in unpredictable distribution patterns. In spite of a limited locomotive capability, marine nematodes may choose where to settle after re-suspension and may maintain their position in the sediment under calm conditions, leading to small-scale (<1 m) spatial variability. However, in more energetic environments, nematodes become re-suspended with sediments and re-distributed at distances dependent on prevalent hydrodynamic regimes, from metre- to decametre-scale or more. In this study, we tested the hypothesis that micro-habitats (i.e. runnels and sandbars) in a macrotidal sandy beach influence the distribution patterns of free-living marine nematodes by exhibiting contrasting hydrodynamic regimes. Specifically, we predicted patchier distributions in the calmer environment (runnel). We sampled nematodes in each habitat from <1 m to decametre scales. Our results show more heterogeneous spatial distributions in the runnel, presumably owing to a predominance of active displacement under calmer conditions and sediment cohesion by algal films. Biological similarity among runnel replicates was low, whereas replicates from the sandbar exhibited higher similarity, presumably because of homogenization of the sediment and inhabiting fauna by tidal currents. A significant negative correlation between biological similarity and sampling distance was found in the runnel, but not in the sandbar. The most similar samples were the closest in the runnel and the most distant in the sandbar. More patchily distributed taxa were found in the runnel and a larger fraction of homogeneously or randomly distributed taxa in the sandbar. We conclude that different hydrodynamic regimes in contrasting intertidal micro-habitats significantly influenced the nematofaunal distribution, resulting in different spatial patterns next to one another in the same beach. This has significant implications for sampling and monitoring designs and begs the need for detailed studies about the physical and biological processes governing meiobenthic communities.

The analyses presented in this paper provide evidence that several community metrics and indicators of the inner shelf community in the Cantabrian Sea show response to placement of anti-trawling reefs. Total biomass, species richness, and to a lesser extent, maximum length and percentage of large fish, were sensitive to exclusion of trawling. Density, diversity and average trophic level did not show this sensitivity. The main species profiting from trawl exclusion were seabreams (Sparidae), catsharks and skates (Elasmobranchii), red mullets (Mullidae), gurnards (Triglidae) and John Dory (Zeus faber). Conversely, the main fishery target species (hake, anglerfish and megrim) showed a progressive decrease in abundance during the study period, a pattern which was also shown by their total stock biomass in the totality of the shelf area. Sea urchins, cephalopods and gastropods also increased in relative abundance with trawl exclusion. Reef age was identified as a key factor in reef development. After reef deployments, two periods were identified: (1) a recovery period, in which total biomass increased, mainly as a consequence of the increase in generalist species (e.g. catsharks); and (2) a consolidation period, during which biomass increased again, mainly as a consequence of an increase in specialized stenoic species (e.g. sparids), while biomass of generalist species remained constant or declined.

This work provides information about the fish assemblage structure along the estuarine gradient of Baía da Babitonga, south Brazil. The seasonal and spatial dynamics of fish and their relationship with physical–chemical variables were investigated. A total of 70,085 fish of 70 taxa were collected. Late larva and early juveniles of Engraulidae, Eucinostomus spp. and Mugil spp. dominated in abundance, representing 62% of all fish captured. Permutational multivariate analysis of variance identified distinct fish assemblages within the bay and during the year. The marine straggler species Harengula clupeola, Oligoplites saliens and Trachinotus carolinus and the estuarine migrant Anchoa tricolor were characteristic of the outer-most bay area, while the estuarine resident and migrant species Atherinella brasiliensis, Anchoa januaria, Sphoeroides greeleyi and Citharichthys spilopterus, and the marine migrant Diapterus rhombeus were characteristic of the inner portion of the estuary. The seasonal changes in community structure observed were mainly related to the greater abundance of T. carolinus in the warm/wet season, Micropogonias furnieri in the transition season and Oligoplites saliens in the cold/dry season. Depth, followed by salinity, explained the greater part of the variability in the abundance of dominant species and was found to be important in shaping the assemblages. Nevertheless, the amount of variation unexplained by the measured abiotic variables was relatively high (73%), suggesting the effect of additional regulatory factors. Many fish species use the shallow waters of the bay in transitory or permanent ways, and knowledge about their relationship with the environment is necessary for the success of conservation strategies for this ecosystem.

Corals live in close association with bacterial communities, but the nature of the relationship is still poorly understood. In this study, three scleractinian coral species, Galaxea fascicularis, Pavona cactus and Turbinaria reniformis were incubated under different laboratory conditions, and the composition of the bacterial community associated with their tissue or skeleton was compared between species or between species and seawater using denaturing gradient gel electrophoresis (DGGE). The amount of dissolved organic carbon (DOC) excreted and the mucus glycoconjugate composition were also determined for each species. The aim of the study was to assess if the bacterial community composition was species-specific or linked either to the seawater composition, or to the quality and quantity of carbon released by each coral. Results obtained showed that DOC release was significantly different (P < 0.0001) for the three species, with the highest excretion rate for G. fascicularis. Also, the mucus of G. fascicularis and P. cactus mainly contained galactose and glucose whereas the mucus of T. reniformis contained more glucose and xylose. Cluster analyses of microbial community composition showed that the bacterial community was species-specific in the coral tissue but not in the skeleton, in all conditions. It remained specific when corals were incubated in the same or in different aquaria, and under different seawater renewal rates. Since DOC release rates and bacterial composition were both different according to the coral species considered, a link might be suggested between the two parameters. Sequencing of DGGE bands indicated that some bacterial phylotypes were consistently retrieved in all samples of a given species.

The distribution and ecology of scleractinian corals on reef ecosystems along the coast of the State of Alagoas, north-east Brazil, were characterized. The scleractinians comprised 13 species in nine families, with five endemic corals, on the Alagoas coast. All of these species were found on reef ecosystems of two distinct geological origins. Coral reefs are predominant on the northern and central coast with banks near the beach line and distributed along the coast line, with many platform surfaces emerging during low tide. Sandstone reefs are more common along the south coast of Maceió city and the southern coast of Alagoas. These reefs were formed by old sand banks solidified through sedimentation starting from chemical reactions with calcium carbonate or iron oxide from the Quaternary period, and are generally in rows parallel to the coastline and near the outlets of rivers and estuaries. A few species including Favia gravida and Siderastrea stellata were found in the intertidal zone on top of the reef platform of both types of reefs. The other scleractinian species were observed on the reef borders where there were some inlets and channels. A larger number of coral species occur on the northern coast where the seawater is clearer throughout the year.

Gametogenesis and reproductive periodicity of the solitary scleractinians Flabellum alabastrum (from the Rockall Trough) and F. angulare (from the Porcupine Seabight) were investigated. Samples were collected between depths from 1370 to 2190 m for F. alabastrum and 2412 to 2467 m for F. angulare. Both species showed gonochorism with a 1:1 sex-ratio and broadcast spawning of gametes is inferred from the lack of brooded planulae. Oocyte sizes were large in both species (925 μm in F. alabastrum and 1015 μm in F. angulare), suggesting lecithotrophic larval development. Fecundity and periodicity of oocyte development differed between the two species. Flabellum alabastrum produced a maximum of 2800 oocytes per polyp quasi-continuously, whereas the deeper species F. angulare produced a maximum of 550 oocytes per polyp either seasonally or periodically. Both species showed size-dependent fecundity. The data show a decrease in oocyte size and fecundity with depth, in concordance with other deep-water scleractinian species.

Effect of epibenthic algae as species-specific coral settlement inducers was examined by laboratory experiments using six Acropora species. When epibenthic algae grew on artificial plates at three depths (shallow, middle and deep) on a reef slope over a period of two months, there was no effect as species-specific inducers. However, when the growth period was prolonged to five months, the larvae of Acropora digitifera which dominates on the shallow reef slope mainly settled on the plates that were conditioned at the shallow depth, while the larvae of A. muricata which dominates on the middle slope concentrated on the plates that were conditioned at the middle depth. These results indicate that epibenthic algae may act as a cue for the habitat selection of Acropora corals as a settlement inducer. However, the fact that there was no preference for specific plates in other species suggested that epibenthic algae do not act as a sole indicator in selecting a suitable settlement place for Acropora larvae.

The settlement and recruitment of the small brachyuran crab Halicarcinus planatus from the central area of Golfo San Jorge, south-western Atlantic Ocean, was studied. Three different artificial collectors were evaluated: smooth-surface panels, panels covered with synthetic lawn and ballasted plastic boxes filled with remains of fishing nets. In addition, plankton samples were taken monthly and water salinity and temperature were recorded. Between July 2006 and June 2007, the collectors were deployed monthly in the subtidal zone of two nearby localities and collected two months later. The recovered crabs were classified into four stages: settlers, recruits, advanced juveniles and mature crabs. There were differences in the presence of stages among collector types and seasons but not between localities. Settlers and recruits were abundant on the panels with synthetic lawn, while late juvenile and mature females were more frequent in the boxes. Larval stages occur between July and February, and only zoeas I and II were found. The males, which were only represented by early juveniles, were exclusively found on the panels with synthetic lawn, from where they would subsequently migrate to cryptic habitats such as the holdfast of Macrocystis pyrifera. Settlement occurs between September and April. Settlers showed a peak in abundance during November–December, while the recruits showed two peaks, one in December and the other in February–March. For late juveniles, the maximum abundance was recorded in April–May. Ovigerous females were found between May and September, when the experiment ended. Settlement and recruitment of H. planatus in Golfo San Jorge occur over a prolonged period. Individuals may undergo shifts in microhabitat use during this period, probably related to the search for food and shelter, and avoidance of predation and cannibalism.

Many preys retreat into a refuge as a response to the presence of a predator, a behavioural strategy which guarantees safety but is also costly due to a trade-off between hiding time and time spent in other essential activities. The balance between costs and benefits of hiding, which are influenced by different factors, determine the hiding duration. In a field experiment, the anti-predator behaviour of the mud crab Austrohelice crassa was studied to assess the effects of two factors, body size and neighbour density, on the time spent hiding in burrows following a predator threat. Hiding times, body size (estimated from burrow diameter) and neighbour density (number of other burrows within a 30 cm radius) were measured for 158 individual crabs during a snorkelling survey. Regression analyses showed that hiding time of individual crabs significantly increased with increasing body size, and decreased with increasing neighbour density. These trends are the result of three main selective pressures: size-biased predation risk, dilution of predation in dense clusters of burrows, and more intense competition in dense clusters. Variation among individual crabs probably reflects differences in the balance between costs and benefits for crabs differing in body size and neighbour density.

In this study, fecundity of Munida gregaria in northern Patagonia was analysed in relation to size and compared with other studies in different sites along its latitudinal distribution. Also, morphological changes in embryos reared in the laboratory, and the chronology of its appearance were observed. Fecundity (total number of eggs in a clutch) was strongly correlated to size (carapace length in mm) (R = 0.638) and the regression equation fitted by least squares was Log(F) = −1.37 + 3.85 · log(CL). Size specific fecundity was higher than in southern locations along Patagonia. Recently extruded eggs are smaller than in southern Patagonia measuring an average of 530 μm in diameter and 0.043 mm3 in volume. When ready to hatch, those measures increased by 30% and 50% respectively. Complete embryonic development lasted an average of 27.9 days at fixed temperature of 11°C. Five development stages were defined based on morphological changes: (1) from fertilization to the appearance of embryonic primordium (2–3.5 days); (2) embryonic tissues occupying less than half of the egg perimeter in lateral view (7–10 days); (3) embryonic tissues without pigments and occupying more than half of the egg perimeter in lateral view (5–8 days); (4) embryos with reddish eye pigments and chromatophores (4–6 days); and (5) ocular globe completely pigmented (3–4 days).

Very little is known about the life history of Robsonella fontaniana. In particular, there are no descriptions of the early life stages that enable correct identification of samples taken from the wild. In this work, eggs and hatchlings are described from egg clutches obtained in the field with brooding females and incubated until hatching. Individual eggs exhibited marked differences in stages of embryonic development within egg clutches or even within a single egg string. For one clutch collected at early stages of embryonic development, embryogenesis took 91 days at 11.5 °C and for a second clutch at intermediate developmental stages it took 68 days at 11 °C and 39 days at 14 °C. For the later clutch the hatching period lasts 25 days at 14 °C. The eggs and paralarvae were small, with an egg length of 3.9–5.2 mm, a dorsal mantle length of 2–3 mm and a total paralarvae length of 3.4–6.0 mm. Chromatophore shape and distribution presented a very distinctive pattern. Characteristics of the eggs, egg strings and paralarvae make it possible to distinguish the early stages of R. fontaniana from those of other octopodid species found off the Atlantic coast of Patagonia.

Following the ‘Volgoneft-248’ oil spill, phytoplankton distribution within the affected area was investigated for two years. Simultaneously measured physical variables such as salinity, temperature, Secchi disc, current speed and direction, and total petroleum hydrocarbons (TPH) were evaluated together with phytoplankton data. At the time of the accident, the TPH concentration in surface water was measured as 2.17 mg l−1 and decreased to 88.5 µg l−1 after five days. In the first sampling period, no diatoms were detected in surface water, while dinoflagellates were dominant in the phytoplankton community. The species composition of phytoplankton changed rapidly in two months and the diatoms increased in terms of abundance and diversity. This indicated that the diatoms might be more sensitive to oil pollution than the dinoflagellates. In comparison with the historical datasets, the low phytoplankton abundance following the oil spill should be considered as the small effect of oil on the phytoplankton rather than natural variability of the ecosystem. High oil concentration in the water column caused stress on the phytoplankton and influenced the species composition negatively depending on the sensitivity of groups and the natural variability of the ecosystem.

Intracapsular oxygen availability is one of the main factors affecting embryo development of marine gastropod species with encapsulation. This is because the low solubility and diffusion rate of O2 in water, plus the low oxygen diffusion rate that the capsule wall presents, reduces oxygen inside capsules. In addition, temperature affects embryo development inside capsules through its effect on embryo metabolic rate and oxygen availability. In spite of both factors being highly correlated and that a synergic effect on embryo development may be expected, there are few studies evaluating temperature and intracapsular oxygen availability simultaneously. In this work we evaluated the role of the capsule wall of the marine gastropod Chorus giganteus as a barrier for oxygen diffusion and its interaction with temperature affecting intracapsular oxygen availability and embryonic development. For that, we cultivated capsules in seawater at three different temperatures, 9, 12 and 15°C, for a time to complete embryo development. Oxygen level was measured inside capsules with and without embryos, and outside capsules at all temperatures. The number of capsules successfully hatched at the end of the experiment, and early and late embryo mortality were recorded. Finally, we measured embryo metabolic rate at the three different temperatures assayed. We found that embryo mortality and abnormal morphological development were more frequent at higher temperatures. Intracapsular oxygen availability decreases at higher temperatures in capsules with and without embryos. These results may be explained by an increase in the total intracapsular embryo metabolic rate (per capsule) with temperature and an inadequate oxygen diffusion rate from seawater through the capsule wall and intracapsular fluid to the embryonic cells. Our findings suggest that encapsulation is constrained at high temperatures in C. giganetus affecting significantly its reproductive success. This may have important consequences in a scenario of global warming.

The influence of the lunar phases and tidal range on the fish capture was analysed in a tidal flat in Barra do Paraguaçu (Baía de Todos os Santos). The sampling was realized in the flood tide and ebb tide of the spring (full moon) and neap (waning moon) tides, between June 2007 and May 2008. At all sampling occasions, two parallel drags were accomplished to the tidal flat, in the same direction of the current, in a 100 m long area marked on the beach beforehand, using a seine net of 15 m × 2.0 m with a mesh of 12 mm between adjacent knots. A total of 2312 fish specimens were captured (26.5 kg), belonging to 75 species from 45 families. The mean number of captured fish was significantly larger in full moon at ebb tides, while the mean weight in the captures was larger in ebb tides. There was significant difference in number of species, number of fish, richness and diversity between full and waning moons. The number of fish and biomass were significantly different between tides. Significant differences were found in community structure regarding trophic groups in relation to tide and moon, although the classic diversity indices did not capture this effect between tides. Furthermore, it was possible to identify preferences of occurrence related to the change of tide in dominant species.

In the present study, chthamalid barnacles of the Persian Gulf and Gulf of Oman were collected from the coastal zone of Iran. Extensive collecting of different habitat types resulted in finding two species: Chthamalus barnesi and Microeuraphia permitini. In addition to the Persian Gulf and Gulf of Oman, the former species was also collected from the Red Sea and Gulf of Aden. Both species are described and compared for their key characters with some representative members of the genera from other parts of the world.