Trematodes are the main macroparasites in coastal waters. The most abundant and widespread form of these parasites is metacercaria. Their impact on their host fitness is considered relatively low but metacercarial larvae of some species can have deleterious effects on individuals and/or populations. This review focused on the cockle Cerastoderma edule and four species of the genus Himasthla; a common host–parasite system in marine coastal environments. Our aims were (1) to review literature concerning Himasthla continua, Himasthla elongata, Himasthla interrupta and Himasthla quissetensis in cockles; (2) to provide molecular signatures of these parasites and (3) to analyse infection patterns using a 20-year monthly database of cockle monitoring from Banc d'Arguin (France). Due to identification uncertainties, the analysis of the database was restricted to H. interrupta and H. quissetensis, and it was revealed that these parasites infect cockles of the same size range. The intensity of parasites increased with cockle size/age. During the colder months, the mean parasite intensity of a cockle cohort decreased, while infection occurred in the warmest season. No inter-specific competition between trematode parasites was detected. Furthermore, even if the intensity of H. interrupta or H. quissetensis infection fluctuated in different years, this did not modify the trematode community structure in the cockles. The intensity of infection of both species was also positively correlated with trematode species richness and metacercarial abundance. This study highlighted the possible detrimental role of Himasthla spp. in cockle population dynamics. It also revealed the risks of misidentification, which should be resolved by further molecular approaches.

Haplosporidian protist parasites are a major concern for aquatic animal health, as they have been responsible for some of the most significant marine epizootics on record. Despite their impact on food security, aquaculture and ecosystem health, characterizing haplosporidian diversity, distributions and host range remains challenging. In this study, water filtering bivalve species, cockles Cerastoderma edule, mussels Mytilus spp. and Pacific oysters Crassostrea gigas, were screened using molecular genetic assays using deoxyribonucleic acid (DNA) markers for the Haplosporidia small subunit ribosomal deoxyribonucleic acid region. Two Haplosporidia species, both belonging to the Minchinia clade, were detected in C. edule and in the blue mussel Mytilus edulis in a new geographic range for the first time. No haplosporidians were detected in the C. gigas, Mediterranean mussel Mytilus galloprovincialis or Mytilus hybrids. These findings indicate that host selection and partitioning are occurring amongst cohabiting bivalve species. The detection of these Haplosporidia spp. raises questions as to whether they were always present, were introduced unintentionally via aquaculture and or shipping or were naturally introduced via water currents. These findings support an increase in the known diversity of a significant parasite group and highlight that parasite species may be present in marine environments but remain undetected, even in well-studied host species.

Hydraulic dredging for bivalves, such as cockles (Cerastoderma edule), has the potential to cause significant impacts on marine intertidal benthos. Although this fishing activity is common in northern European Natura 2000 sites such impacts may be incompatible with conservation objectives for designated habitats and species within these sites. In 2009–2010 a spatially nested control-impact study was undertaken before (t0), 8–9 days after (t1) and 4 months (t2) following dredging and extraction of 108 tonnes of cockles from a standing stock of 2158 tonnes in Dundalk Bay. This study failed to detect significant effects on benthic sediments, or the overall community structure. However, a fishing effect on the target species C. edule in one sampling area and a short lived effect on the bivalve Angulus tenuis were identified. Significant spatial and temporal variability in abundance of species and taxonomic groups, unrelated to fishing effects, was observed. Previous studies on the effects of fisheries on marine intertidal benthos have reported variable results, related to study design and objectives and the physical characteristics of the study site. Site specific studies, relative to the intensity and frequency of proposed fishing activity, may be required to adequately inform managers whether such activities are compatible with specific conservation objectives for Natura 2000 sites.

A systematic review of the parasites, pathogens and commensals of the edible cockle (Cerastoderma edule) and of the lagoon cockle (Cerastoderma glaucum) has been completed. A total of 59 different conditions have been reported throughout the range of both of these hosts; of these 50 have been reported in edible cockles, and 28 in lagoon cockles. Cockles are hosts to viruses, bacteria, fungi (including Microsporidia), Apicomplexa, Amoeba, Ciliophora, Perkinsozoa, Haplosporidia, Cercozoa, Turbellaria, Digenea, Cestoda, Nematoda, Crustacea and Nemertea. A number of these have been reported sporadically although they may be associated with mortalities. In particular, mortalities have been associated predominately with digeneans and some protistan infections. In many cases pathology is marked in affected animals and parasites have been shown to reduce fecundity, alter burrowing behaviour and limit growth. This review provides information on the individual and population effects of these conditions as well as providing suggestions for future research. In particular, there has been a lack of taxonomic rigour applied to many studies and as a result there are a number of erroneous host records. There is a need to re-describe a number of parasite species and to determine the life cycle of those considered to be important mortality drivers.

Among benthic organisms, bivalves are often used as bioindicators of environmental pollution because of their high bioaccumulation capacities for heavy metals leading to metallothioneins (MT) induction. MT are small cytosolic metal-binding proteins involved in metal homeostasis and detoxification in living organisms. These proteins can also be induced by a wide range of factors, such as hormones, physical stress, parasitism. MT quantification in relation to parasitism is rarely reported in literature, while parasites are omnipresent and have deleterious impacts on bivalves. Moreover, only a few number of MT genes have been characterized in molluscs. This study describes the partial sequence of the MT gene (Cemt1) in the edible cockle Cerastoderma edule. The cockle's MT cDNA was sequenced and showed over 80% homology to several other bivalve MT sequences. This sequence was then used to determine MT specific primers which can be used in quantitative real time PCR. MT protein and gene expression levels were quantified for individuals selected under different conditions: free from or infected by the digenean trematode Himasthla elongata, and under cadmium exposure at 15 µg Cd L−1. Results evidenced that MT concentrations were significantly increased by both treatments; parasite infection and Cd exposure. Moreover, congruent results between MT protein and gene expression levels were obtained.