Understanding how selective logging affects biodiversity is crucial to planning cost-effective conservation strategies in tropical forests, yet there is limited understanding of its impacts on fauna functional diversity in the tropical Americas. We assessed how selective logging intensification and time since logging influence multiple metrics of fauna functional integrity in the Brazilian Amazon by collecting bird and dung beetle data within 48 logging management units that had experienced varying exploitation intensities between 1.5–2.0 and 5.0–6.0 years before the faunal surveys. We investigated assemblage responses and used functional attributes to assess changes in functional diversity, specialization, originality and species rarity. Using point counts and pitfall traps, we collected 5081 records of 182 bird species and 7892 dung beetles from 45 species. Logging intensification led to significant declines in most dung beetle responses and bird body mass, whereas time since logging was a key driver of dung beetle and bird functional and taxonomic diversity. Our study presents novel empirical evidence of how logging intensification effects vary across taxa, ecological metrics and time since logging, which is key to informing forest conservation and further investigating environmental degradation impacts on tropical biodiversity.

Records of the Nubian Bustard Nubotis nuba range across the drier northern component of the Sahel zone in Africa from Mauritania through Mali, Niger, and Chad to Sudan. Reports of significant hunting pressure have caused it to be treated as IUCN “Near Threatened” for almost 40 years, but information relating to distribution and population trends remains scattered, anecdotal, and unevaluated. All accessible evidence bearing on its conservation is therefore assembled and reviewed here. The lack of records from Mauritania since 1984, Mali since 1974, and Sudan since 1988 suggests that populations there may now be very small and perhaps entirely extinguished. Records from Niger and Chad remain many, thanks largely to the assiduous reporting of observations on the West African Bird DataBase (WABDaB) by researchers involved in ungulate conservation. The national nature reserves of Aïr and Ténéré (RNNAT) and Termit and Tin-Toumma (RNNTT) in Niger and the Ouadi Rimé–Ouadi Achim Faunal Reserve (RFOROA) in Chad emerge as vital to the long-term survival of the Nubian Bustard, given the accumulating evidence in both countries of (1) widespread habitat degradation and conversion, as human populations and their livestock expand in numbers and range in the Sahel, and (2) intensifying persecution, as highly mobile and well-armed local poachers plus Gulf state hunters gain increasing vehicular access to the remotest regions, depleting all huntable wildlife (a Sahel-wide bird study, 2011–2019, encountered just 16 bustards of four species – none Nubian – in 487 observation days). Populations of Nubian Bustard must now be greatly fragmented and depleted, with many entirely lost, so targeted programmes to minimise disturbance, persecution, and damage to habitat in the three key reserves (including the exclusion of powerlines) are urgently needed. Ultimately however the survival of this and other endemic Sahelian species can only be secured via a huge programme of ecologically and economically sustainable management practices.

Over the last decades, European farmland birds have strongly declined, mainly driven by agricultural intensification. The Ortolan Bunting Emberiza hortulana has suffered one of the most severe declines among farmland specialists. In order to maintain viable populations of the species in the long run, there is a vital need for evidence-based conservation measures. The main goal of this study was to detect the key drivers of breeding-territory selection and mating success of the species in an agricultural landscape in central Europe. We found that the landscape structure within the territories of Ortolan Bunting breeding pairs strongly varied from the overall habitat availability in the study area on both the territory and home-range scales. However, the environmental conditions also differed between the territories of breeding pairs and those of unpaired males. While landscape structure played an important role in breeding-territory selection, it had only weak effects on mating success. In contrast, crop type and vegetation height at potential nesting sites were important drivers of mating success. Overall, our study revealed that Ortolan Bunting has very complex breeding-habitat requirements. Only heterogeneous agricultural landscapes where (1) suitable song posts, (2) appropriate nesting sites, and (3) sufficient foraging habitats occur in close proximity are suitable for breeding. According to the findings of our study, agri-environmental schemes should primarily facilitate low-intensity farming practices that promote landscape heterogeneity, provide suitable nesting sites, and sustain a high abundance of invertebrate prey in farmlands.

The present study provides new insight into suitable microsporidian–host associations. It relates regional and continental-wide host specialization in microsporidians infecting amphipods to degraded and recovering habitats across 2 German river catchments. It provides a unique opportunity to infer the persistence of parasites following anthropogenic disturbance and their establishment in restored rivers. Amphipods were collected in 31 sampling sites with differing degradation and restoration gradients. Specimens were morphologically (hosts) and molecularly identified (host and parasites). Amphipod diversity and abundance, microsporidian diversity, host phylogenetic specificity and continental-wide β-specificity were investigated and related to each other and/or environmental variables. Fourteen microsporidian molecular operational taxonomic units (MOTUs), mainly generalist parasites, infecting 6 amphipod MOTUs were detected, expanding the current knowledge on the host range by 17 interactions. There was no difference in microsporidian diversity and host specificity among restored and near-natural streams (Boye) or between those located in urban and rural areas (Kinzig). Similarly, microsporidian diversity was generally not influenced by water parameters. In the Boye catchment, host densities did not influence microsporidian MOTU richness across restored and near-natural sites. High host turnover across the geographical range suggests that neither environmental conditions nor host diversity plays a significant role in the establishment into restored areas. Host diversity and environmental parameters do not indicate the persistence and dispersal of phylogenetic host generalist microsporidians in environments that experienced anthropogenic disturbance. Instead, these might depend on more complex mechanisms such as the production of resistant spores, host switching and host dispersal acting individually or conjointly.

Coastal vegetation includes unique species with adaptations to the specific conditions of this environment, and in the Mediterranean region urban development of coastal areas has severely affected coastal ecosystems. Astragalus berytheus Boiss. & Blanche is a narrow endemic plant of the eastern Mediterranean coast, occurring in Lebanon and Palestine/Israel; its Red List status has not been previously assessed. As a result of the effects of urban sprawl in coastal areas A. berytheus is one of the most threatened plant taxa in Lebanon. We assess the conservation status of this taxon and propose conservation measures. Only one population of A. berytheus is extant in Lebanon, in the Tyre Coast Nature Reserve. We recommend that A. berytheus should be categorized as Endangered globally and as Critically Endangered at the national level in Lebanon. Unless adequate conservation measures are implemented A. berytheus is likely to go extinct in Lebanon in the near future.

Anthropogenic habitat alteration and invasive species are threatening carnivores globally. Understanding the impact of these factors is critical for creating localized, effective conservation programmes. Madagascar's Eupleridae have been described as the least studied and most threatened group of carnivores. We investigated the effects of habitat degradation and the presence of people and exotic species on the modelled occupancy of the endemic fosa Cryptoprocta ferox, conducting camera-trap surveys in two western deciduous forests, Ankarafantsika National Park and Andranomena Special Reserve. Our results indicated no clear patterns between habitat degradation and fosa occupancy but a strong negative association between cats Felis sp. and fosas. Cat occupancy was negatively associated with birds and positively associated with contiguous forest and narrow trails. In contrast, dog Canis lupus familiaris occupancy was best predicted by wide trails, degraded forest and exotic civets. Our results suggest fosas are capable of traversing degraded landscapes and, in the short term, are resilient to contiguous forest disturbance. However, high occupancy of cats and dogs in the landscape leads to resource competition through prey exploitation and interference, increasing the risk of transmission of potentially fatal diseases. Management strategies for exotic carnivores should be considered, to reduce the widespread predation of endemic species and the transmission of disease.

Conservation of charismatic vertebrates in modern landscapes often includes habitat engineering, which is well supported by the public but lacks a consideration of wider conservation consequences. We analysed a pond management project for an introduced island population of captive-bred, Critically Endangered European mink Mustela lutreola. Ponds were excavated near watercourses in hydrologically impoverished forests to support the main prey of the mink (brown frogs Rana temporaria and Rana arvalis). A comparison of these ponds with other, natural, water bodies revealed that the (re)constructed ponds could reduce food shortages for the mink. Moreover, the ponds provided habitat for macroinvertebrates that were uncommon in the managed forests in the study area, including some species of conservation concern. The cost-effectiveness of the management of charismatic species can be increased by explicitly including wider conservation targets at both the planning and assessment stages.

From September 2009 to September 2010 we undertook a survey of the Endangered François’ langur Trachypithecus francoisi in south-east Chongqing to compare the species' present status with historical records from the 1990s. Based on a literature review, interviews with local people and our survey we found François’ langurs in only three isolated sites, across four counties, with a total area of occurrence of c. 57 km2. The total population was estimated to be c. 200 individuals in 27 mixed sex groups. There were 21 groups (149 individuals) within a reserve (Jinfoshan), and four groups (36) in Furongjiang and two groups (13) in Heishangu were not within any reserve. The primary threat to the langur is habitat loss caused by traditional firewood use and agricultural encroachment but there is also increasing loss of forest to hydroelectric projects and construction of tourism infrastructure and facilities such as highways, hotels and telephone lines. The three sites in southern Chongqing province are adjacent to four areas in north-east Guizhou province that contain c. 60% of the wild population of the species in China. The seven sites combined are the main stronghold of this species and the geographical proximity of the sites raises the possibility of setting up ecological corridors between some of them.

The historical deforestation of the Upper Brahmaputra Valley in the Indian state of Assam has resulted in the transformation of its once-contiguous lowland rainforests into many isolated forest fragments that are still rich in species, including primates. We report the recent history and current status of six diurnal primates in one large (2,098 ha) and three small (<500 ha) fragments of the Upper Brahmaputra Valley. We censused primates in the small fragments during 2002, 2005, 2009, in the large fragment in 2008, and used other published census data to derive population trends. We also used key informant surveys to obtain historical occurrence data for these populations. Our analyses reveal the recent extinction of some populations and the simultaneous long-term persistence of others in these fragments over 16 years. Most populations appeared to have declined in the small fragments but primate abundance has increased significantly in the largest fragment over the last decade. Addressing the biomass needs of the local human populations, which appears to drive habitat degradation, and better protection of these forests, will be crucial in ensuring the future survival of this diverse and unique primate assemblage in the last rainforest fragments of the human-dominated Upper Brahmaputra Valley.

In recent decades there has been a marked decline in most ortolan bunting Emberiza hortulana populations in temperate Europe, with many regional populations now extinct or on the brink of extinction. In contrast, Mediterranean and, as far as we know, eastern European popula-tions seem to have remained relatively stable. The causes of decline remain unclear but include: habitat loss and degradation, and related reduction in prey availability; climate change on the breeding grounds; altered population dynamics; illegal captures during migration; and environmental change in wintering areas. We review the current knowledge of the biology of the ortolan bunting and discuss the proposed causes of decline in relation to the different population trends in temperate and Mediterranean Europe. We suggest new avenues of research to identify the factors limiting ortolan bunting populations. The main evidence-based conservation measure that is likely to enhance habitat quality is the creation of patches of bare ground to produce sparsely vegetated foraging grounds in invertebrate-rich grassy habitats close to breeding areas.

Wooded meadows with a history of traditional land use over thousands of years support a great diversity of various taxa. Today, however, high-species-rich communities in wooded meadows are threatened because of the cessation of traditional management in large areas. We studied lichen communities on 136 deciduous trees (Betula spp., Fraxinus excelsior and Quercus robur) in 12 wooded meadows in three regions of Estonia, and assessed the effect of habitat change due to the abandonment of traditional management on epiphytic lichen species composition, considering factors on three spatial scales: regional, habitat and individual tree. The variation partitioning approach in partial Canonical Correspondence Analysis (pCCA) revealed that most of the variation in species composition is described by the species of host tree and tree bark pH. Other tree level variables, foremost tree diameter, described as much of the compositional variation as geographic location (region) or environmental conditions in wooded meadows. Of the environmental factors studied, woodland canopy cover is the strongest predictor of the change in epiphytic lichen species composition from the community type of semi-open wooded meadows to species-poor communities characteristic of secondary forest. General Linear Model (GLM) analysis of the abundance of the 35 most frequently observed lichen species revealed that more than half of them (21) are influenced by site openness (canopy cover and/or undergrowth density), showing that increasing canopy cover has a negative effect on the abundance of epiphytic lichen species characteristic of traditionally managed semi-open wooded meadows. The results emphasize that the preservation of large old deciduous trees of various species and the maintenance of the semi-open structure of stands are vitally important for the protection of epiphytic lichen communities in wooded meadows.

Amphibians are one of the most threatened animal groups. In the Family Centrolenidae c. 50% of the species are declining and threatened with extinction. One of these is the glassfrog Cochranella mache, endemic to seasonal evergreen forests of the West Ecuadorian region and restricted to highly fragmented forest of < 100 km2 in the Cordillera Mache-Chindul, north-western coastal Ecuador, at 100–640 m. We surveyed this region to elucidate the distribution and conservation status of C. mache. We located it in three new localities and also found a museum specimen from a further new locality. We recommend that the species should be categorized as Critically Endangered because of the continuous and progressive destruction of its increasingly fragmented habitat. Recent surveys of glassfrog species sympatric with C. mache showed low relative abundances compared to surveys in the 1970s and 1980s. Because of the relationship between forest and local climate we suggest that gradual declines of lowland glassfrog populations may be caused by local climate changes produced by forest destruction. In situ conservation is required to halt and mitigate these impacts. Further research on the effects of habitat loss, fragmentation, and associated climate changes on Neotropical amphibians is required.

Wetlands in India supply crucial human and animal needs such as drinking water, protein production, fodder, water purification, wildlife habitat, and flood storage. Increased appreciation of uses and threats is essential to protect wetlands where justified. Three quarters of India's population is rural, it places great demands on India's wetlands and losses continue to occur. This paper is based on extensive discussions with natural resource managers, government employees, farmers, academicians, and resource users at dozens of sites in India, as well as an extensive literature search. Twelve important kinds of wetland loss are identified and mechanisms believed to be causing them discussed: (1) agricultural conversion, (2) direct deforestation, (3) hydrologie alteration, (4) inundation, (5) defoliation, (6) altered upper watersheds, (7) accumulative water demands, (8) water quality degradation, (9) wetland consolidation, (10) global climate change, (11) ground-water depletion, (12) exotic species and biodiversity. Wetland understanding, management, and Public awareness in India must continue growing if wetland resources are to remain functional.

We investigated the effects of human disturbance and attitudes on the density of the tree agama Acanthocercus atricollis atricollis in a densely populated rural settlement in South Africa. In this environment agamas live on trees that are harvested for firewood or maintained for fruit production. We conducted visual encounter surveys of A. a. atricollis and interviewed local households to establish whether human attitudes and actions could affect tree agama populations. Although local residents viewed tree agamas negatively (50% of interviewees claimed to have killed an agama) and acted to exclude them from their environment, tree agama density in villages was higher than that of adjacent communal rangelands and than a previously reported density estimate in a nearby protected area. We suggest three major factors that could explain why tree agamas are favoured in this peri-urban landscape in the face of human persecution: firstly, predators such as snakes and raptors are likely to occur at a much lower density in peri-urban areas; secondly, their primary prey (insects) may be more abundant or accessible in this landscape; thirdly, they may experience less competition for resources.

Seventeen protected areas in south-east Thailand were surveyed for the Endangered pileated gibbon Hylobates pileatus during April 2004–March 2005, with the objectives of establishing the species’ current distribution, obtaining approximate population estimates for the largest forest areas, and assessing threats to the species’ survival. Landsat images and a geographical information system were used to identify the remaining suitable habitat within the species’ range. We conducted auditory surveys to census the gibbon populations in the five largest protected areas of Khao Yai, Pang Sida, and Tab Lan National Parks, and Khao Soi Dao and Khao Ang Ru Nai Wildlife Sanctuaries. Small protected areas within the range of the pileated gibbon (five parks and seven sanctuaries) were also evaluated, using questionnaires and interviews with local staff and villagers. Approximately 3,800 km2 of suitable canopy forest with an estimated 3,000 breeding groups, containing c. 12,000 individuals, remain within the four largest areas of forest. Pileated gibbons are also still present in 10 of the smaller protected areas. The largest populations of pileated gibbon in Thailand should be viable over the long-term provided that hunting, habitat degradation and further fragmentation are controlled. Hunting is now the most significant problem, and gibbon densities are well below the carrying capacity of the habitat and declining. As patrolling is not sufficiently effective to control poaching, the cooperation and support of local villagers must be sought in future conservation efforts.

Habitat degradation affects mixed-species bird flocks (flock hereafter) through two mechanisms – changes in the bird community from which flocks are drawn and changes in the propensities of species to flock. We determined the relative influence of these two mechanisms by examining variation in flocks across nine rain-forest fragments (range 11–2600 ha) in a plantation landscape in the Western Ghats, India. We found differences between fragments in average number of species (range 10.8–15.2) and individuals (range 19.0–37.6) per flock, number of species that participated in flocks (range 34–59), encounter rates (range 0.5–2.4 flocks h−1) and flock composition. Multiple regression and randomization tests revealed that different mechanisms contributed to this variation. Three flock variables (open-forest individuals per flock, total open-forest species that participated in flocks in a fragment, flock composition) mainly reflected changes in the bird communities of fragments. Habitat structure strongly influenced three flock variables (open-forest species per flock, total and rain-forest individuals per flock) and flock composition to a lesser extent. Finally, flock encounter rate was strongly related to fragment area, but not to abundance of flock participants indicating habitat degradation-induced changes in propensities of species to flock.

A survey of Vulnerable Barbary macaque Macaca sylvanus populations in the Djebela region of northern Morocco was conducted in October-November 2004 and the species' presence verified in four areas. This macaque occurs in habitat types ranging from matorral (shrub vegetation) to higher altitude fir forest. A total of 89 individuals were observed in nine groups. Comparisons of our survey with the previous one undertaken in the same area in 1980 indicate that group sizes are similar but the total population size may have decreased. We estimate there is a population of 200–300 Barbary macaques in the Djebela. Although some areas where the species is found are now protected, further work will be crucial to safeguarding this species in northern Morocco.

To elucidate effects of fragmentation and degradation of tropical rainforest on Negros Island (Philippines) on tropical herpetofauna, nine tropical rainforest fragments (eight limestone and one non-limestone), ranging in area from five to 122 ha (total area = 352 ha) in south-western Negros were surveyed using cruising and quadrat sampling methods, between December 2001 and October 2002. A 14-ha limestone plantation forest served as a reference site. Ten to fifteen of the total 61 species (16.4–24.6%) expected in the nine forest fragments (taken as a whole) had been lost in the previous 50 years. These species are known to occur in the tropical rainforest on Cuernos de Negros and environs in south-eastern Negros Island at altitudes <500 m above sea level. The factors responsible for the loss of these species appear to be (1) removal of large trees, which decreases canopy cover causing physical changes; and (2) forest fragmentation, which increases the edge areas. However, it is not possible to separate the effects of each of these two factors. The main factor that was correlated with the number of species in the limestone forest fragments appeared to be area. Two species of frogs appeared to be represented by relatively moderate population densities: the Negros cave frog (Platymantis spelaeus) and the common forest frog (Platymantis dorsalis). The burrowing skink (Brachymeles boulengeri taylori) also exhibited a relatively higher density than the other burrowing species of skinks. The other herpetofaunal species exhibited low population densities.