The lower Maastrichtian chalk of the Isle of Rügen was deposited in a pelagic setting in the aphotic zone. Its rich fossil content has attracted research attention for centuries, whereas its ichnological characteristics remain poorly understood, even though horizons with intense bioturbation and occurrences of trace fossils in flint are common. The enhanced colour contrast of smooth chalk faces reveals repeated phases of benthic colonisation; larger burrows are commonly subject to silicification, while flint nodules also can preserve burrows in chalk. A total of 37 ichnogenera, including 47 ichnospecies of bioturbation and bioerosion trace fossils have been recognised; these are here briefly described, in addition to indeterminate material. Many ichnotaxa are recorded for the first time from the Rügen chalk. Bioerosion is restricted mainly to local hardgrounds in the form of biogenic components (such as shells and belemnite guards).

Radiocarbon (14C) dating is often carried out upon multi-specimen samples sourced from bioturbated sediment archives, such as deep-sea sediment. These samples are inherently heterogeneous in age, but existing 14C calibration techniques were originally developed for age homogeneous material, such as archaeological artifacts or individual tree rings. A lack of information about age heterogeneity leads to a systematic underestimation of a sample’s true age range, as well as the possible generation of significant age-depth artifacts during periods of the Earth’s history coinciding with highly dynamic atmospheric Δ14C. Here, a new calibration protocol is described that allows for the application of sedimentological priors describing sediment accumulation rate, bioturbation depth and temporally dynamic species abundance. This Bayesian approach produces a credible calibrated age distribution associated with a particular laboratory 14C determination and its associated sedimentological priors, resulting in an improved calibration, especially in the case of low sediment accumulation rates typical of deep-sea sediment. A time-optimized computer script (biocal) for the new calibration protocol is also presented, thus allowing for rapid and automated application of the new calibration protocol. This new calibration protocol could be applied within existing age-depth modeling software packages to produce more accurate geochronologies for bioturbated sediment archives.

Radiocarbon (14C) can be used to build absolute chronologies and reconstruct ocean ventilation over the last 40 ka. Sample size requirements have restricted 14C measurements in marine cores with low foraminifer content, impeding 14C-based studies focused on abrupt climate events. Recent developments have demonstrated that small-sized foraminifer samples can now be dated using a gas introduction system at the cost of a small decrease in precision. We explore the potential of gas measurements on benthic and planktonic foraminifers from core SU90-08 (43°03′1″N, 30°02′5″W, 3080 m). Gas measurements are accurate, reproducible within 2σ uncertainty and comparable to graphite measurements. Both techniques yield negative 14C benthic-planktonic (B-P) age-offsets after Heinrich event 1. We argue that negative B-P ages result from bioturbation and changes in foraminifer abundances, with the chance of negative B-P especially increased when the 14C age gradient between the deep and surface waters is decreased. Small-sized 14C measurements seem to capture the variance of the foraminifera age distribution, revealing the active mixing in those archives. Sediment deposition and mixing effects possibly pose a greater obstacle for past 14C-based dating and ocean ventilation reconstructions than the measurement precision itself, particularly in relatively low sedimentation rate settings.

The ecological ubiquity of parasites and their potential impacts on host behaviour have led to the suggestion that parasites can act as ecosystem engineers, structuring their environment and physical habitats. Potential modification of the relationship between parasites and their hosts by climate change has important implications for how hosts interact with both their biotic and abiotic environment. Here, we show that warming and parasitic infection independently increase rates of bioturbation by a key detritivore in aquatic ecosystems (Gammarus). These findings have important implications for ecosystem structure and functioning in a warming world, as alterations to rates of bioturbation could significantly modify oxygenation penetration and nutrient cycling in benthic sediments of rivers and lakes. Our results demonstrate a need for future ecosystem management strategies to account for parasitic infection when predicting the impacts of a warming climate.

Deep-sea sediment mixing by bioturbation is ubiquitous on the seafloor, and it can be an important influence on the fidelity of paleoceanographic records. Bioturbation can be difficult to quantify, especially in the past, but diffusive models based on radioactive tracer profiles have provided a relatively successful approach. However, a singular, constant mixing regime is unlikely to prevail in a region where dynamic oceanographic changes in the bottom water environment are a consequence of paleoclimatic variability. In this study, foraminiferal stable isotopes, radiocarbon (14C) dating, and 230Th fluxes are utilized to understand the sediment mixing history in the easternmost region of the North Pacific. In the uppermost sediment, a 12,000-yr offset between planktonic foraminifera species N. incompta and G. bulloides is observed that coincides with age plateaus at 2000–2500 yr for N. incompta and 15,000–16,000 yr for G. bulloides despite coincident glacial-interglacial shifts in δ18O of benthic species. These age plateaus, particularly for G. bulloides, are a result of changing foraminiferal abundance related to assemblage shifts and carbonate preservation changes since the last glacial period, providing a window into the extent of mixing in the past. The 14C and stable isotope results can be simulated using an iterative model that couples these changes in foraminiferal abundance with variability in mixing depth over time. The best-fit model output suggests that the deepest, or most intense, mixing of the past 30,000 yr (30 kyr) may have occurred during the Holocene. Even though changes in mixing affect the 14C and δ18O of planktonic species that have dramatically varying abundance, substantial age control is nevertheless provided by δ18O measurements on the more consistently abundant benthic foraminifera Uvigerina, thus allowing the construction of a reliable chronology for these cores.

Grayscale intensity profiles from photographic images offer a rapid means of obtaining paleoclimate proxy records from Chinese loess, dune sand, and paleosols. Although the data can be obtained using conventional 35-mm film images, a digital camera and laptop computer will produce a high-resolution grayscale profile at a field site within minutes. Comparison of grayscale profiles with profiles of magnetic susceptibility measured down loess and dune-sand sections at sites on the Loess Plateau and Tibetan Plateau in a range of altitudes and climatic regimes shows that the two parameters are highly correlated. Therefore, grayscale intensity is a convenient alternative to magnetic susceptibility for generating paleoclimatic data in the loess and desert-margin regions of China. The resolution of both grayscale and susceptibility profiles ultimately is limited by bioturbation, which is most pronounced in paleosols.

Two types of microtopographic features (plant scar mounds and plant scar depressions) on surfaces of barren desert pavements provide a unique record of the former presence of large perennial plants. Evidence of bioturbation by burrowing animals extends more than 1 m beneath each type of plant scar, indicating that both features originated as large bioturbation mounds. Formation of bioturbation mounds in desertscrub environments is generally restricted to areas beneath widely separated, large perennial plants. The contrasting forms of plant scars (mounds vs. depressions) represent time-dependent changes following disappearance of the large plants and eventual cessation of bioturbation. Plant scar mounds represent a geologically recent episode of plant mortality, whereas plant scar depressions represent the disappearance of plants at a considerably earlier time, possibly at the Pleistocene–Holocene transition. Contrasting spatial distributions of the two kinds of plant scars indicate that vegetation on alluvial fans has progressively contracted from a more diffuse, former vegetation cover, yielding the wide, barren pavement surfaces present today. In less arid portions of the Sonoran Desert, spatial distribution of recent plant mortality due to persistent, severe drought provides an analog of the progressive loss of plants from different parts of the landscape in the past.

Relationships between sediment characteristics and the spatial organization of biogenic structures remain poorly understood, albeit important for characterizing bioturbation impacts and small-scale ecological patterns. Using axial tomodensitometry (CT-scan) and core sectioning, we studied the spatial distribution of Alitta virens burrows in sediment cores from two mudflats with different degrees of exposure along the St Lawrence Estuary, Canada. A variety of burrow morphologies was observed at both sites, with most being I-shaped. Most values measured (organic matter content, mean tomographic intensity, the number and diameter of burrow shafts and the percentage of space they occupy per transverse section) covaried with depth. The more sheltered site had higher organic matter and mud contents, and lower average tomographic intensity values. The spatial distribution of burrow shafts also differed between sites, with the more sheltered site having a higher number of burrow shafts and percentage of biogenic space in the upper sediment column, as well as a greater volume of biogenic structures that were connected to the surface (although intra-site variability was great). Along the horizontal plane and at various depths within sediments, burrow shafts were more randomly distributed at the exposed site, compared to a more even, maximal spacing at the sheltered site. In addition to finding differences in burrow organization at two spatial scales, we found significant correlations between tomographic intensity and (1) the number of burrow shafts, (2) biogenic space and (3) organic matter content. CT-scan data, including tomographic intensity, are useful for examining and comparing biogenic structures in sediment cores.

Zoophycos-group burrows are prevalent elements of the post-Cambrian trace fossil record. Here we report the oldest specimens of Zoophycos from Lower Cambrian strata of the Lower Member Wood Canyon Formation in southeastern California. In addition to these being the oldest examples of this well-known trace fossil, the discovery of these specimens also reveals the presence of deposit feeding considerably earlier than has been suggested for the advent of this feeding style. This type of activity may have had a significant impact on sediment mixing during the Precambrian–Cambrian transition, though the rarity and shallow tier position of these specimens suggests otherwise.

The intertidal crabs Neohelice granulata and Cyrtograpsus angulatus are common on the south-west Atlantic coast but they rarely share the same microhabitat. They are similar in size and in several life history traits which promote competition. Neohelice granulata is the dominant species in intertidal soft-sediment and salt-marsh areas from southern Brazil to northern Patagonia Argentina, where it forms extensive burrowing beds. Its burrowing activity affects sediment characteristics as well as the infaunal community. When both species coexist N. granulata constrains the distribution and modifies some population characteristics and burrowing behaviour of C. angulatus. However, C. angulatus live in burrows forming dense burrowing beds in soft-bottom intertidal areas where N. granulata is absent. Where both species coexist, C. angulatus rarely constructs burrows and N. granulata clearly dominate soft-sediment areas forming conspicuous burrowing beds. This suggests that these crab species could have similar ecological roles in some effects on sediments related to burrowing activities. In this study, we experimentally compare their effects on sediment characteristics and infaunal community. The results of the experiment showed that C. angulatus modify sediment water and organic matter contents and grain size–frequency distributions similarly to N. granulata. Neither N. granulata nor C. angulatus affected the mean abundance of infaunal organisms during the experiment but their variances showed the same patterns in many cases, indicating similar effects. These results indicate that C. angulatus can modify sediment characteristics similarly to N. granulata, and has similar interactions with infaunal species.

Manila clam (Tapes philippinarum) culture and sediment interactions were tested by comparing two rearing areas, including an oceanic (‘Le-Ferret’) and a more estuarine (‘Les-Jacquets’) sites in the bay of Arcachon (France). The growth of a calibrated clam population (10-mm spat) was monitored in these two areas with a concomitant sediment-water interface survey over a 1.5-year period. Two sites per area, including control and rearing plots, were sampled on a monthly basis. The potential clam farming impacts by bioturbation and interactions were examined at three sediment depths: 0−1, 1−2 and 2−10 cm. Moreover, the main hydrobiological parameters were measured on a weekly basis to establish a relationship between these parameters and sediment-water interface characteristics. The existence of a gradient between the three depths was revealed for most of the parameters examined, with the exception of silt and organic carbon levels, and this regardless of the area examined. Clam growth showed a rate improvement in the oceanic area, which is characterized by a lower silt content. The clam effect was minimal and the activity identified at the ‘Ferret’ site was in fact due to the presence of a net which acted as a particle trap. No significant relationship was established between water column parameters and those of the sediment-water interface at the two geographical sites examined. These results demonstrate that clam rearing had only a limited effect on the environmental sediment parameters (i.e. water percentage, and phaeopigments and silt levels) from a spatio-temporal point of view. Therefore, a return to environmental conditions existing before the implementation of clam farming is likely to occur upon cessation of this activity.

Des sédiments d'un lac de gravière mésotrophe ont été mis à incuber au laboratoire pendant 15 jours en présence ou en l'absence de vers oligochètes. L'apport d'azote ammoniacal marqué par l'isotope lourd (15N) a permis de mesurer les flux entre les différents compartiments azotés (N organique, N-NH4 +, N-NO3 -). La nitrification apparaît négligeable alors que la dénitrification, un peu plus de 1 mg.m-2 h-1, est alimentée par les nitrates allochtones de la nappe. La perte d'azote ammoniacal par volatilisation est plus importante que la dénitrification mais elle est probablement influencée par le système d'aération. L'influence des oligochètes n'apparaît sensible qu'au niveau du couple minéralisation - réorganisation qu'elle active nettement.

Fluxes of nutrients (NH4+, NO3-, PO43- and Si(OH)4) were studied on an intertidal mudflat in Marennes-Oléron Bay, France, at two different seasons and at different times of the emersion period. Fluxes through the sediment-water interface were both calculated from vertical profiles of nutrient concentration in pore-water (diffusive fluxes, JD) and measured in light and dark benthic mini-chambers (measured fluxes, J0). Results indicate that ammonia was mainly released in summer while nitrate was mainly taken up in late winter. This uptake from the overlying water was probably due to the coupling of nitrification-denitrification within the sediment. The J0/JD ratio further indicates that bioturbation likely enhanced ammonia release in summer. Concerning phosphate, the comparison of diffusive and measured fluxes suggests that PO43- could be assimilated by the biofilm in winter while it was released in summer at a high rate due to both bioturbation and desorption because of the relative anoxic conditions in summer. Silica was always released by the sediment, but at a higher rate in summer. Statistically significant differences in measured fluxes were detected in dark chambers at different times of low tide, thus suggesting a short-term variability of fluxes. Microphytobenthos preferred ammonia to nitrate, but assimilated nitrate when ammonia was not available. It also turned out that benthic cells could be limited in nitrogen during low tide in late winter. In summer, ammonia was not limiting and microphytobenthic activity significantly decreased the measured flux of NH4+ in the middle of low tide when its photosynthetic capacity was highest.