A massive die-off of benthic suspension feeders (BSF) covered by large amounts of sediments was observed along Prince Islands coasts (north-eastern Sea of Marmara) in August 2015. Alcyonarians, pennatulaceans, bivalves and sponges were severely affected. Many BSF probably died from burial and clogging of their feeding and respiratory apparatus. Of the gorgonian colonies, 66 ± 34% (mean ± SD) were dead, while 15 ± 16% (mean ± SD) displayed recent necrosis on the colony surface. In addition, histopathological and microbial examinations of the affected gorgonians and gold corals (Savalia savaglia) suggest that stress caused by sedimentation made them vulnerable to exploitation by consistently isolated opportunistic microorganisms. We isolated Vibrio splendidus and Vibrio neptunius from diseased gold coral colonies, but the bacterial isolates obtained from gorgonians could only be identified to genus Vibrio level. The presumably artificially introduced fungus Mucor circinelloides was common on both gold coral and gorgonians. This mould and opportunistic bacteria may have colonized BSF by taking advantage of low oxygen levels leading to impaired coral immune responses and thereby exacerbated the BSF mortality. Construction and landfill operations at Yassıada seem to be the greatest contributor to the observed sedimentation, as shown by silicate concentrations in nearby waters. These observations imply that preventive measures are necessary when construction operations take place in the vicinity of sensitive marine habitats.

Although uranium series (U-series) ages of growth-position fossil corals are important to Quaternary sea-level history, coral clast reworking from storms can yield ages on a terrace dating to more than one high-sea stand, confounding interpretations of sea-level history. On northern Barbados, U-series ages corals from a thick storm deposit are not always younger with successively higher stratigraphic positions, but all date to the last interglacial period (~127 ka to ~112 ka), Marine Isotope Substage (MIS) 5.5. The storm deposit ages are consistent with the ages of growth-position corals found at the base of the section and at landward localities on this terrace. Thus, in this case, analysis of only a few corals would not have led to an error in interpreting sea-level history. In contrast, a notch cut into older Pleistocene limestone below the MIS 5.5 terrace contains corals that date to both MIS 5.5 (~125 ka) and MIS 5.3 (~108 ka). We infer that the notch formed during MIS 5.3 and the MIS 5.5 corals are reworked. Similar multiple ages of corals on terraces have been reported elsewhere on Barbados. Thus, care must be taken in interpreting U-series ages of corals that are reported without consideration of taphonomy.

The last interglacial period has a timing and duration that can be estimated from U-series dating of emergent, coral-bearing deposits on tectonically stable coastlines. High-precision dating from Bermuda, the Bahamas, Hawaii, and Australia suggests that the last interglacial period had a sea level at least as high as present from ∼128,000 to 116,000 yr B.P. Sea level reached a near-present level more quickly after the close of the penultimate glacial period than at the close of the last glacial period and the duration of high sea level is longer than that implied by the deep-sea record.

Corals from the Seychelles Islands, Indian Ocean, occur mainly as small coralline algae–vermetid remnants found in cavities adhering to the rock surface, and they rarely attain more than 2 m2 in area. Samples of Goniastrea and Porites from elevations between 1.7 and 6 m above present mean sea level were dated by TIMS 238U–234U–230Th techniques. The ages from well-preserved corals lie between 131,000 and 122,000 yr B.P., in agreement with most other observations of the last-interglacial sea level. Field evidence and dating from high marine limestones from two sections at La Digue Island indicate a period of coral buildup until 131,000 yr B.P., followed by a drop in sea level between 131,000 and 122,000 yr B.P.

We have analyzed the stable oxygen isotopic composition of two Porites corals from the Chagos Archipelago, which is situated in the geographical center of the Indian Ocean. Coral δ18O at this site reliably records temporal variations in precipitation associated with the Intertropical Convergence Zone (ITCZ). Precipitation maxima occur in boreal winter, when the ITCZ forms a narrow band across the Indian Ocean. The Chagos then lies within the center of the ITCZ, and rainfall is strongly depleted in δ18O. A 120-yr coral isotopic record indicates an alternation of wet and dry intervals lasting 15 to 20 yr. The most recent 2 decades are dominated by interannual variability, which is tightly coupled to the El Niño–Southern Oscillation (ENSO). This is unprecedented in the 120 yr of coral record. As the ITCZ is governed by atmospheric dynamics, this provides evidence of a major change in the coupled ENSO–monsoon system.

Despite the ecological relevance of tropical reefs, information on species composition and coverage on sandstone reefs is very scarce. Most studies on reef systems have been conducted for true coral reefs, ecosystems that show calcareous formations with extensive coral cover and diversity. The aim of this study was to analyse the coverage of benthic assemblages in a submerged sandstone reef (22–24 m) in a relatively non-explored region (Tropical South-western Atlantic). In this area, filamentous algae (43.6%) and sponges (19.6%) are the main components of the benthic reef assemblages. Other benthic reef fauna (ascidians, corals and zoanthids) showed lower coverage, although their importance may vary depending on the area. A negative correlation between filamentous algae and slow-growing reef-building organisms (calcareous algae) was observed. High sand coverage (19.6%) over the reef revealed a high rate of silting. A low coral diversity (only two resilient species) was quantified, and most of the coral colonies were small-sized. The results provide a baseline assessment for a poorly known ecosystem with turbid-water benthic communities and higher sea-surface temperatures near the Earth's equator.

A complete coral succession through the Ordovician–Silurian transition in South China reveals an adaptive phase during the Hirnantian glaciation, followed by an early survival phase and finally a late survival phase that persisted into the early Silurian. We demonstrate that a coral assemblage of latest Hirnantian to earliest Silurian age, remarkably similar to those from the Edgewood fauna known from Laurentia, occurs stratigraphically above the typical Hirnantian fauna. This, in combination with other evidence (e.g. brachiopods, lithology and chemostratigraphy), suggests the Edgewood fauna probably post-dated the early–middle Hirnantian glaciation, rather than being coeval with the older glacial-related Hirnantia fauna. Evidence from South China shows that the Edgewood fauna appeared in the very latest Hirnantian and extended into the middle Rhuddanian, considerably younger than previously believed. Such a new correlation necessitates a reassessment of the influence of the end-Ordovician glaciation on biotas. We argue that this major glaciation probably would have substantially affected the ecosystem even in tropical regions, as shown by the development there of the Hirnantia fauna or, alternatively, the presence of a conspicuous stratigraphic hiatus. This suggests a surprisingly rapid biotic recovery during the subsequent postglacial transgression, represented by the flourishing of comparatively diverse shelly faunas (e.g. the Edgewood fauna and the Cathaysiorthis brachiopod fauna) in nearshore shallow water environments from Laurentia to eastern peri-Gondwana terranes or blocks (e.g. South China).

The synchrony of spawning is of paramount importance to successful coral reproduction. The precise timing of spawning is thought to be controlled by a set of interacting environmental factors, including regional wind field patterns, timing of the sunset, and sea surface temperatures (SST). Climate change is resulting in increased SST, which is causing physiological stress in corals and could also be altering spawning synchrony and timing. In this study, we examined the effect of increasing seawater temperature by 2°C for 1 month prior to the predicted spawning time on reproduction in the coral Acropora digitifera. This short period of elevated temperature caused spawning to advance by 1 day. In animals incubated at elevated temperature, egg number per egg bundle did not change, however, egg volume significantly decreased as did sperm number. Our results indicate that temperature is acting both as a proximate cue to accelerate timing and as a stressor on gametogenesis to reduce fecundity. This finding suggests that increasing SSTs could play a dramatic role in altering reproductive timing and the success of corals in an era of climate change.

Porites panamensis is the scleractinian coral with the widest latitudinal distribution in the eastern tropical Pacific. Here, we report the occurrence of P. panamensis in an estuarine environment of the central Pacific coast of Colombia at the rocky reef of Los Negritos, Málaga Bay. Porites panamensis seems to withstand a wide range of environmental settings, including areas with unfavourable conditions for the survival of most other corals. Such wide tolerance may explain its broad latitudinal distribution in the eastern tropical Pacific.

A total of ten coral species are reported from the Capo Rizzuto (Calabria) Marine Protected Area on the Ionian coast of Italy. Two species, Polycyathus muellerae and Paracyathus pulchellus, are new records for the Ionian Sea, a finding that expands their current known distribution range. Eight species are new records for the Ionian coast of Italy. Another species, Astroides calycularis, was identified from a photograph taken in the area, but its presence was not confirmed in the field. The solitary zooxanthellate coral Balanophyllia europaea was found associated with the yellow encrusting coralline alga, Lithophyllum pustulatum, which represents a novel observation requiring further investigation.

Curaçao has reef terraces with the potential to provide sea-level histories of interglacial periods. Ages of the Hato (upper) unit of the “Lower Terrace” indicate that this reef dates to the last interglacial period, Marine Isotope Stage (MIS) 5.5. On Curaçao, this high sea stand lasted at least 8000 yr (~ 126 to ~ 118 ka). Elevations and age of this reef show that late Quaternary uplift rates on Curaçao are low, 0.026–0.054 m/ka, consistent with its tectonic setting. Ages of ~ 200 ka for corals from the older Cortalein unit of the Lower Terrace correlate this reef to MIS 7, with paleo-sea level estimates ranging from − 3.3 m to + 2.3 m. The estimates are in agreement with those for MIS 7 made from other localities and indicate that the penultimate interglacial period was a time of significant warmth, on a par with the present interglacial period. The ~ 400 ka (MIS 11) Middle Terrace I on Curaçao, dated by others, may have formed from a paleo-sea level of + 8.3 to + 10.0 m, or (less likely) + 17 m to + 20 m. The lower estimates are conservative compared to previous studies, but still require major ice sheet loss from Greenland and Antarctica.

Aquarium systems allow technically sophisticated experiments that promise new opportunities to answer urgent questions about reef coral biology, for instance assessing the responses to decreasing environmental pH and/or increased temperatures. Over recent years, long-term culture and (predominantly asexual) propagation of corals has become possible in such systems. At present however, only limited data are available that clarify whether or not responses of the coral holobiont are dominated by the acclimatization to life in captivity or continue to reflect, for example, taxonomic differences seen in nature. We studied the diversity of the symbiotic algae in corals and sea anemones after long-term aquaculture by analysis of their small subunit (SSU) ribosomal DNA gene. A field sample of Acropora clathrata from the Arabian Gulf which was used as a control contained clade C zooxanthellae. The aquarium corals also harboured clade C symbionts, but sequencing of the SSU DNA suggested that the analysed animals host different subclades. A prevalence of clade C is also found among corals from the Indo-Pacific region, the origin of most of the aquarium samples. An individual of the temperate sea anemone Anemonia sulcata (viridis) contained clade A symbionts, similar to those found in nature, even after nearly 10 years of co-culture with sea anemones (Entacmaea quadricolor) and corals hosting clade C symbionts. The results indicate that the specific host–symbiont association occurring in nature appears to persist over >2 years timescales in captivity, with no mixing of symbionts between hosts maintained in the same aquarium or apparent selection of stress-tolerant symbiont strains such as clade D.

The construction of an artificial channel to a small embayment in the Chetumal Bay coastal lagoon complex, located on the Caribbean coast of Mexico, provided an opportunity to evaluate how large environmental changes influenced the structure of a low diversity benthic system. The objective of this study was to demonstrate that despite the absence of previous baseline information, the artificial channel has induced measurable changes in the biodiversity patterns of a hard substrata benthic community. The experimental design took into account the environmental setting influencing local benthic community structure and the sources of variability as a result of different substrate types and water depth. Four localities with ten replicates each were surveyed, and the presence/absence of macrobenthic biota species recorded during the rainy season. Our analysis using permutational multivariate analysis of variance indicated a significant increase in species richness in locations adjacent to the artificial channel. The highest species richness (66 species) was observed in the immediate area adjacent to the artificial channel and where exclusive species density was three to six times (18 exclusive species) than those present in other localities (6, 5 and 3 species) away from the channel. The presence of six species of hard corals indicated that the artificial channel offers a more suitable habitat for marine organisms colonizing the area than the natural channel. This study indicates the relative significance of confinement in structuring coastal lagoon benthic assemblages in tropical systems. Our results are similar to other findings underscoring the rate of colonization of marine organisms as a relevant process to explain benthic assemblage gradients and the importance of spatial–temporal interactions. The changes in species diversity caused by the artificial channel were clearly identified based on a sampling design that incorporated the main sources of environmental variability (distance to channels, substrate type and depth). Our study further demonstrates that changes in benthic community structure in the Chetumal Bay lagoon complex, as a result of human impacts, can be assessed even when community structure data before impact are absent.

Corals live in close association with bacterial communities, but the nature of the relationship is still poorly understood. In this study, three scleractinian coral species, Galaxea fascicularis, Pavona cactus and Turbinaria reniformis were incubated under different laboratory conditions, and the composition of the bacterial community associated with their tissue or skeleton was compared between species or between species and seawater using denaturing gradient gel electrophoresis (DGGE). The amount of dissolved organic carbon (DOC) excreted and the mucus glycoconjugate composition were also determined for each species. The aim of the study was to assess if the bacterial community composition was species-specific or linked either to the seawater composition, or to the quality and quantity of carbon released by each coral. Results obtained showed that DOC release was significantly different (P < 0.0001) for the three species, with the highest excretion rate for G. fascicularis. Also, the mucus of G. fascicularis and P. cactus mainly contained galactose and glucose whereas the mucus of T. reniformis contained more glucose and xylose. Cluster analyses of microbial community composition showed that the bacterial community was species-specific in the coral tissue but not in the skeleton, in all conditions. It remained specific when corals were incubated in the same or in different aquaria, and under different seawater renewal rates. Since DOC release rates and bacterial composition were both different according to the coral species considered, a link might be suggested between the two parameters. Sequencing of DGGE bands indicated that some bacterial phylotypes were consistently retrieved in all samples of a given species.

The majority of the biomass and biodiversity of life on the Earth is accounted for by microbes. They play pivotal roles in biogeochemical cycles and harbour novel metabolites that have industrial uses. For these reasons the conservation of microbial ecosystems, communities and even specific taxa should be a high priority. We review the reasons for including microorganisms in conservation agenda. We discuss some of the complications in this endeavour, including the unresolved argument about whether microorganisms have intrinsic value, which influences some of the non-instrumental motivations for their conservation and, from a more pragmatic perspective, exactly what it is that we seek to conserve (microorganisms, their habitats or their gene pools). Despite complications, priorities can be defined for microbial conservation and we provide practical examples of such priorities.

We report the discovery of Aeronian (Middle Llandovery) graptolites, and corals of probable Devonian age, in boudins hosted by greenschists, within the Southalpine Metamorphic Basement. These discoveries provide key constraints to the depositional age range of the protoliths. This remarkable occurrence of almost undeformed graptolites and compound corals in boudins within a metamorphic shear zone indicates very marked local strain partitioning.