This paper examines genetic erosion in rice landraces thriving in traditional smallholder agricultural systems in the Sarangani uplands, Philippines. In these marginal areas, the crop is closely interwoven with tribal culture and is vital in ensuring food security among upland households. Field visits unveiled high varietal diversity for upland rice and a rich tapestry of indigenous knowledge associated with its cultivation and use. Study results, however, revealed the tapering of the crop's genetic base due to farmers' changing priorities, pest infestation, weakening seed supply systems, shift to cash crops, natural calamities, environmental degradation, government programmes and peace and order problems. Consequently, these pressures undermined traditional agricultural systems in Sarangani upland communities causing food and water scarcity, hunger and suffering on a catastrophic scale. Interdisciplinary strategies aimed at simultaneously averting further varietal losses and environmental degradation while improving human well-being are therefore warranted. Furthermore, making traditional rice farming a lucrative endeavour will induce the younger generation to remain in the uplands and choose farming as a profession. This way, biocultural restoration of agriculture will be attained and the continued presence of the tribal groups in the Sarangani uplands will be ensured for a very long time.

In many regions of the world, the cultivation of landraces is still common, in particular in centres of crop diversity. Significant effort has been put into ex situ conservation of landraces but limited data exist on the changes in genetic diversity that occur over time in farmers’ fields. We assessed temporal changes in barley landrace diversity in Jordan using seed samples collected in 1981 and 2012 from the same locations. We did not observe significant changes in the amount of genetic diversity, but samples collected in 2012 were more homogenous and less locally distinct. In two sites, we observed replacement of the old material. We observed a change in phenotype, and phenotypes were found to be more homogeneous among sites in 2012. Climate changed significantly over the study period, becoming hotter and dryer, but we did not identify any correlation between the changes in climate and genetic and phenotypic variations. While the amount of genetic diversity in terms of allelic richness and number of multi-locus genotypes has been maintained, local distinctiveness among landrace barley populations in Jordan was reduced.

The loss of variation in crops due to the modernization of agriculture has been described as genetic erosion. The current paper discusses the different views that exist on the concept of genetic erosion in crops. Genetic erosion of cultivated diversity is reflected in a modernization bottleneck in the diversity levels that occurred during the history of the crop. Two stages in this bottleneck are recognized: the initial replacement of landraces by modern cultivars; and further trends in diversity as a consequence of modern breeding practices. Genetic erosion may occur at three levels of integration: crop, variety and allele. The different approaches in the recent literature to measure genetic erosion in crops are reviewed. Genetic erosion as reflected in a reduction of allelic evenness and richness appears to be the most useful definition, but has to be viewed in conjunction with events at variety level. According to the reviewed literature, the most likely scenario of diversity trends during modernization is the following: a reduction in diversity due to the replacement of landraces by modern cultivars, but no further reduction after this replacement has been completed.

Changes in global biodiversity at the genetic level have proved difficult to determine for most organisms because of lack of standardized, repeated or historical data; this hampers the attempts to meet the convention on biological diversity (CBD) 2010 targets of reducing loss of genetic diversity, particularly of crop species. For rice, where germplasm and genetic data have been collected throughout South and Southeast Asia over many decades, contrary to popular opinion, we have been unable to detect a significant reduction of available genetic diversity in our study material. This absence of a decline may be viewed positively; over the 33-year timescale of our study, genetic diversity amongst landraces grown in traditional agricultural systems was still sufficiently abundant to be collected for ex situ conservation. However, if significant genetic erosion does take place in the future as a result of accelerating global warming and/or major changes in land use or agricultural practices, will it be catastrophic or gradual, and how will it be detected? We have shown a strong link between numbers of landraces collected (and therefore extant) and genetic diversity; hence, we have a clear indicator to detect loss of genetic diversity in the future. Our findings lend considerable support for ex situ conservation of germplasm; the more than substantial genetic resources already in genebanks are now safe. On the other hand, it is the germplasm growing in farmers' fields, continually adapting genetically to changing environmental conditions and evolving novel genetic forms, whose future has been much less certain but can now be effectively monitored using our criteria.

Ethiopia is believed to be the centre of origin and domestication for sorghum, where sorghum remains one of the main staple crops. Loss of biodiversity is occurring at an alarming rate in Ethiopia and crops, including sorghum, have long been recognized as vulnerable to genetic erosion. A major collection of sorghum germplasm was made in 1973 by Gebrekidan and Ejeta from north-eastern Ethiopia. A new collection of landraces was made in 2003, and these were field evaluated at Sirinka in 2004 along with representative samples from the 1973 collection. Farmer surveys and soil and climate surveys were also performed. Preliminary analysis demonstrated that some important landraces have disappeared either locally or regionally in the past 30 years and many other landraces have become marginalized. Landraces which are less preferred in terms of agronomic value and end use, and introductions, have become increasingly important. Late maturing landraces were found to be particularly vulnerable, with a number disappearing altogether. Farmers have become more risk averse, and factors such as declining soil fertility, more frequent drought and unreliable rainfall, and increased pest infestation have contributed to a change in farmer landrace selection. Data are presented on the variability and unique characters of some of the Ethiopian landraces, and implications for conservation are discussed.

Many areas of rain forest now exist as habitat fragments, and understanding the impacts of fragmentation is important for determining the viability of populations within forest remnants. We investigated impacts of forest fragmentation on genetic diversity in the butterfly Mycalesis orseis (Satyrinae) in Sabah (Malaysian Borneo). We investigated mtDNA diversity in 90 individuals from ten forest sites typical of the sizes of forest remnants that currently exist in the region. Nucleotide diversity declined with increasing isolation of remnants, but there was no effect of remnant size or population size, and haplotype diversity was similar among sites. Thus, approximately 50 y after forest fragmentation, few changes in genetic diversity were apparent and remnants apparently supported genetically viable populations of this butterfly. Many studies have shown that responses of species to habitat fragmentation usually follow a time delay, and so we developed a Monte Carlo simulation model to investigate changes in genetic diversity over time in small remnants. Model output indicated a substantial time delay (> 100 y) between fragmentation and genetic erosion, suggesting that, in the smallest study remnants, an increased risk of extinction from reduced genetic diversity is likely in the longer term.

In this study an evaluation was made of changes in the genetic variation of barley (Hordeum vulgare L.) of Nordic and Baltic origin, from the end of the 19th century until today. A comparison of Nordic and Baltic material with exotic material that has not been subjected to intense selection was also made. A total of 293 accessions, including 160 Nordic and 80 Baltic landraces, cultivars and breeding lines, and another 53 landraces of exotic origin (Central Asia), were surveyed using isozyme starch gel electrophoresis. For the four isozymes studied, 28 alleles at 11 loci were observed. The average total genetic diversity value (HT) for individual loci ranged between 0 and 0.519. In the exotic material nine loci were polymorphic and two monomorphic, compared to seven polymorphic and four monomorphic loci in the Nordic and Baltic material. Some of the rare alleles were detected only in the exotic material. The studied isozyme loci of Nordic and Baltic material indicated that modern cultivars have a lower average genetic diversity value compared to the landraces, old and exotic material.

Traditional vegetables in Tanzania have been underutilized by farmers and neglected by research and development programmes. In the framework of the project ‘Promotion of Neglected Indigenous Vegetable Crops for Nutritional Health in Eastern and Southern Africa’ led by the World Vegetable Center (AVRDC) and partners, focus group meetings were conducted in 10–12 villages in each of four districts of north-east Tanzania, which differed in ethnicity as well as in altitude, climate and soil conditions. Farmers named 10–34 different traditional vegetables per village, summing up to an overall of 102 in all four districts, about half of which were only identified by local names. The number of wild traditional vegetables used was always greater than the number of cultivated traditional types, with ratios of wild to cultivated vegetables ranging from 11:9 in an urban highland district to 59:11 in a rural coastal district. Some wild traditional vegetables were found to be threatened with genetic erosion due to changes in land use and eating habits. The degree of urbanization and the availability of infrastructure contributed more strongly to genetic erosion as compared to climatic conditions. Farmers' training encouraged exotic vegetable cultivation and reduced traditional vegetable diversity. At the same time, indigenous knowledge on how and where to collect, cultivate and prepare traditional vegetables was disappearing.

There is a long-standing concern that modern plant breeding reduces crop genetic diversity, which may have consequences for the vulnerability of crops to changes in pests, diseases, climate and agricultural practices. Recent molecular assessments of genetic diversity changes in existing genepools of major agricultural crops may shed some light on the impact of plant breeding on crop genetic diversity. Reviewing published assessments revealed different impacts of plant breeding on improved genepools, not only narrowing or widening their genetic base, but also shifting their genetic background. In general, the genome-wide reduction of crop genetic diversity accompanying genetic improvement over time is minor, but allelic reduction at individual chromosomal segments is substantial. More efforts are needed to assess what proportion of lost alleles is associated with undesirable traits.

One concern in the ongoing debate over the conservation status of mahogany has been the possibility that selective logging, as a form of negative phenotypic selection, might have led to deterioration in the genetic quality of populations. The incidence and degree of such ‘dysgenic’ effects is discussed, based on a consideration of mahogany logging practices, their expected genetic effects and empirical data on phenotypic selection in forest trees. Loggers have tended to avoid diseased, small, very large and poorly-formed individuals, and consequently logging has tended to increase the proportion of poor quality phenotypes relative to that before logging; in at least some conditions, selection differentials have been strongly negative. However, the upper limit for heritability of logger-selected traits in naturally-regenerated mahogany is probably no more than c. 0.1. Consequently, and assuming relatively extreme but realistic negative selection differentials of 50%, the maximum negative dysgenic response to a single logging-mediated phenotypic selection event is expected to be relatively small, i.e. ≤5%. This expectation is consistent with the empirical information from mahogany and other taxa. The implications of any dysgenic effects depend very much on the use and the future of dysgenically-selected populations. In managed populations, dysgenic effects could be reversed through positive selection. In the case of exploited but currently unmanaged natural populations, dysgenic selection is primarily of importance insofar as it affects fitness. As a threat to mahogany conservation and long-term sustainable production, it is probably insignificant in comparison with other genetic and non-genetic factors.

The global poultry sector is divided into a large-scale commercial sub-sector dominated by international, vertically integrated companies, and a small-scale subsector that provides up to 90 percent of total poultry production in some of the least developed countries. The fast reproduction cycle, low unit costs, economies of scale in research and appropriation, and control of the produce are driving factors in the commercial sector. Private research concentrates on technologies that are likely to result in market applications and returns to investment. Private incentives for animal research are strongest where markets for improved technology are large, technical advances can be made quickly, and intellectual property can be protected. To date, technological protection strategies and contractual practices, rather than formal intellectual property rights strategies, have dominated in the commercial poultry sector. Poultry breeding companies have developed a highly successful way of protecting their intellectual property investment in superior breeds by exploiting heterosis, and the deleterious segregation of hybrid stocks in the next generation. Thus, by restricting access to the pure parent line stock (a form of trade secret) and by selling F1 generation birds, a breeding company remains the sole supplier of useful material. Patents do not yet play a role in poultry breeding, but breeding for disease resistance might change this in the future.

This paper explores the flow of poultry genetic material between developed and developing countries, investments in the poultry sector in developing countries, and economic and legal issues involved. In terms of genetic resources, the main questions concern how the division in the poultry sector affects the full portfolio of poultry genetic resources and if this division has an impact on the traditional small-scale subsector. The analysis is based on country reports to the First Report on the State of the World's Animal Genetic Resources process, studies on flow of genetic material and commercial transactions, and genetic distancing.