Most trees in the eucalypt savannas of Australia have hollow cores, or pipes, caused by termite activity, yet little is known about their effect on tree growth or survival. Five hundred and forty-one trees with known growth and survival histories were cored to determine pipe diameters in wooded savanna of Kakadu National Park, north Australia. Generalized linear modelling and multi-model inference was used to analyse frequency and degree of piping relative to initial tree diameter at breast height (dbh), eco-taxonomic group or species of eucalypt. Growth (dbh increment) and survival (4 y) were analysed relative to initial tree size, pipe ratio (pipe diameter:dbh) and eco-taxonomic group. The frequency of piping was strongly dependent on dbh, increasing with size of tree, and was highest in eucalypts. Growth and survival of eucalypts increased with tree diameter and decreased with pipe ratio. For example, from modelled data, 10-cm-diameter trees without pipes grew 0.14 cm y−1 with 85% survival vs. 10-cm trees with pipe ratios of 0.60 which had near-zero growth and only 46% survival. Comparing 40-cm-diameter trees without pipes to those having pipe ratios of 0.80, growth was 0.22 vs. 0.05 cm y−1, with little difference in survival, 97–99%, respectively. Contrary to the suggestion that tree hollows are an adaptive trait whereby trees benefit by the release of nutrients, in the north Australian eucalypt savannas the net effect of termite piping on individual tree growth and survival was negative.

Many areas of rain forest now exist as habitat fragments, and understanding the impacts of fragmentation is important for determining the viability of populations within forest remnants. We investigated impacts of forest fragmentation on genetic diversity in the butterfly Mycalesis orseis (Satyrinae) in Sabah (Malaysian Borneo). We investigated mtDNA diversity in 90 individuals from ten forest sites typical of the sizes of forest remnants that currently exist in the region. Nucleotide diversity declined with increasing isolation of remnants, but there was no effect of remnant size or population size, and haplotype diversity was similar among sites. Thus, approximately 50 y after forest fragmentation, few changes in genetic diversity were apparent and remnants apparently supported genetically viable populations of this butterfly. Many studies have shown that responses of species to habitat fragmentation usually follow a time delay, and so we developed a Monte Carlo simulation model to investigate changes in genetic diversity over time in small remnants. Model output indicated a substantial time delay (> 100 y) between fragmentation and genetic erosion, suggesting that, in the smallest study remnants, an increased risk of extinction from reduced genetic diversity is likely in the longer term.

The effects of habitat fragmentation on seed dispersal can strongly influence the evolutionary potential of tropical forest plant communities. Few studies have combined traditional methods and molecular tools for the analysis of dispersal in fragmented landscapes. Here seed dispersal distances were documented for the tree Dipteryx panamensis in continuous forest and two forest fragments in Costa Rica, Central America. Distance matrices were calculated between adult trees (n = 283) and the locations of seeds (n = 3016) encountered along 100 × 4-m transects (n = 77). There was no significant difference in the density of seeds dispersed > 25 m from the nearest adult (n = 253) among sites. There was a strong correlation between the locations of dispersed seeds and the locations of overstorey palms favoured as bat feeding roosts in continuous forest and both fragments. Exact dispersal distances were determined for a subset of seeds (n = 14) from which maternal endocarp DNA could be extracted and matched to maternal trees using microsatellite analysis. Dispersal within fragments and from pasture trees into adjacent fragments was documented, at a maximum distance of 853 m. Results show no evidence of a fragmentation effect on D. panamensis seed dispersal in this landscape and strongly suggest bat-mediated dispersal at all sites.

Rapid and massive amphibian population declines have been reported throughout upland areas of the Neotropics. The abundance and species richness of Neotropical amphibian communities suggest that losses of this magnitude are likely to have strong effects at the ecosystem level. To improve understanding of the implications of their loss we used stable isotope analysis to examine trophic relationships in an ecosystem in which amphibians are dominant in a second-order forest stream at 750 m asl in Parque Nacional Omar Torrijos Herrera, Panama. We analysed δ13C, δ15N and C:N ratios of major biotic components (basal resources, invertebrates, amphibians, fish and reptiles) in the stream and of the adjacent riparian food web. Tadpoles (mean δ15N = 4.49‰) and adult amphibians (mean δ15N = 5.45‰) were intermediate links in the aquatic and terrestrial food web respectively. High δ15N signatures identified fish as top predators in the aquatic food web and snakes and the toad Bufo as top predators in the terrestrial food web. Isotopic signatures clearly distinguished between trophic groups of tadpoles: microbial feeders (Centrolenidae, δ15N range = 0.91–3.05‰), herbivores (Rana and Hyla, δ15N range = 4.74–5.15‰) and neuston feeders (Colostethus, δ15N range = 5.31–6.40‰). Dependence on autotrophic production was indicated by enriched signatures of carbon isotopes in pool dwellers versus those that reside in faster-flowing sections of the stream. High nitrogen concentrations in detrital matter (average 0.8%, C:N = 10.3) suggested that grazing tadpoles enhanced nitrogen fluxes and improved the quality of organic matter available to detritivores.

Secondary forests account for 40% of all tropical forests yet little is known regarding their suitability as habitat for diurnal large mammals and game birds. This is especially so for second-growth that develops on large areas of degraded land. We address this by investigating assemblages of large-bodied birds and mammals in extensive patches of secondary forest in the Jarí region of the north-eastern Brazilian Amazon, comparing species richness and abundance against that of adjacent undisturbed primary forests. We conducted 184 km of line-transect censuses over a period of 3 mo, and found that although primary and secondary forests held a similar abundance of large vertebrates, the species composition was very different. Secondary forests supported a high abundance of ungulate browsers (0.85 vs 0.44 indiv. per 10 km) and smaller-bodied primates (15.6 vs 4.6 indiv. per 10 km) compared with primary forests. However, large prehensile-tailed primates were absent (black spider monkey Ateles paniscus) or at very low abundance (Guyanan red howler monkey Alouatta macconelli) in secondary forest. The abundance of large frugivorous/granivorous birds was also low in secondary forests compared with primary forests (22.6 vs 37.1 individuals per 10 km, respectively). Faunal assemblages appear to reflect food resource availability. Concurrent vegetation surveys indicated that secondary forests had high levels of terrestrial and understorey browse. Fruit production was largely restricted to pioneer trees such as Bellucia and Inga spp. Although these regenerating forests were an important habitat for large mammals and birds, they were limited in terms of faunal richness, particularly dispersers of large-seeded plants.

The reciprocal importance of bromeliads and hummingbirds has been proposed for many years, even suggesting coevolution between these two groups. Nevertheless, data are lacking that allow a better test of the relationships involved. Here we investigate the relationship between bromeliads and hummingbirds in an area of secondary Atlantic rain forest in southern Brazil. The study examined the interactions among 12 species of bromeliad and 10 of hummingbird at Reserva Natural Salto Morato, Paraná state. The number of flowering species of bromeliad and the species richness and abundance of hummingbirds were quantified monthly between November 2004 and October 2005. Focal observations on each bromeliad species were made to determine the hummingbird visitors. Neither species richness nor abundance of hummingbirds were related to bromeliad phenology. Together with the monthly variation in visit frequency by a given pollinator to a given plant, these factors indicate a generalization in the use of bromeliads by hummingbirds and argue against tight coevolution. Ramphodon naevius and Thalurania glaucopis were the main pollinators in the community. Aechmea nudicaulis was the most generalist bromeliad species. The generalist species interacted with other generalists or with asymmetric specialists and there was no specialist–specialist interaction. This produced a strongly organized and nested matrix of interactions. This nestedness is similar to other plant-pollinators networks, supporting the hypothesis that the evolutionary relationship between bromeliads and hummingbirds is no stronger than that of other pollination networks.

The mountain gorilla (Gorilla beringei beringei) lives in two geographically separated populations, Bwindi Impenetrable National Park, Uganda and in three national parks spanning the Virunga mountain region in Rwanda, Democratic Republic of Congo, and Uganda. The altitude, climate and plant composition of these habitats differ. Our goal was to compare the diets of gorillas living in each of these habitats. The nutrients in staple foods and in the diets of individuals in a group of gorillas in Bwindi (N = 12 individuals) and a group in the Virungas (N = 7 individuals) were compared to determine if differences in dietary composition affected concentrations of nutrients in their diets. At both sites gorilla diets consisted primarily of herbaceous leaves, but the diet of Bwindi gorillas contained more tree leaves, fruit, pith and dry wood, and fewer stems. Despite differences in habitat and dietary composition, the nutrient concentrations in both gorilla diets were remarkably similar. On a dry matter basis, the diets and staple foods of Bwindi and Virunga gorillas contained similar concentrations of crude protein (CP), fibre (NDF) and non-structural carbohydrates (TNC). Bwindi gorillas ate diets containing 18% CP, 43% NDF and 19% TNC on a dry-matter basis, while the diets of the Virunga gorillas contained 17% CP, 41% NDF and 18% TNC. Our results demonstrate that gorillas consume diets that differ by plant species and part, but contain similar concentrations of nutrients. This suggests that classifying animals by broad dietary strategy (e.g. frugivory and folivory) does not provide a reliable indicator of the nutritional quality of their diet, and that our previous assumptions about these categories should be re-evaluated.

Differentiation of limiting nutrients within small spatial scales has been observed in coastal mangrove forests, but research on other tropical peatlands suggests it is a more widespread phenomenon. In the Changuinola mire of coastal Panama, oligotrophy was hypothesized to increase along a gradient of peat development (peat doming). Nutrient and carbon concentration of leaf tissue, soil, and soil porewater were characterised over a successive sequence of plant communities along the gradient. Soil phosphorus (P) and nitrogen (N) concentrations decreased from 1200 μg P g−1 and 27 mg N g−1 to 377 μg P g−1 and 22 mg N g−1 within 2.7 km into the mire interior. These changes coincided with an increase in soil and average leaf N:P molar ratios from 52–128 and 24–41, respectively. Soil P was strongly related to leaf P and soil N:P to foliar N:P. There was a wide range in δ15N values for canopy (4.0 to −9.4‰), Campnosperma panamense (4.0 to −7.8‰) and understorey (4.8 to −3.1‰) species. Foliar δ15N values of canopy species were strongly related to soil N:P, soil P and leaf P. The depleted foliar δ15N values appeared to be an effect of both the N atmospheric source and P limitation. Here, P limitation is likely associated with ombrotrophic conditions that developed as hydrologic inputs became dominated by precipitation.

Precipitation and temperature are known to have important effects on forest productivity, but these effects may be strongly mediated through their influence on soil and leaf nutrients. We measured indicators of forest productivity and soil and leaf nutrients across independent gradients of precipitation and elevation/temperature in lower montane Hawaiian forests dominated by a single overstorey species, Acacia koa, situated on 1500–3000-y-old soils that were mixtures of volcanic ash and basalt. Stand basal area was highest at the wettest site, 2000 mm mean annual precipitation (MAP), and leaf N and P were lowest at the driest site, 1000 mm MAP. Soil N availability and leaf N concentration declined across an 850-m elevation gradient, but this was not correlated with stand basal area or soil organic matter content. Across all stands, basal area was negatively correlated with the exchangeable soil P fraction. As well, the soil C:N ratio was negatively correlated with both soil P availability and the size of the primary mineral P fraction. Soil P availability and weathering appear to be important determinants of soil organic matter quantity and quality. Overall, precipitation is the major driving force for forest productivity, but P weathering and availability play important roles in limiting productivity in wetter sites and in controlling soil organic matter dynamics in these N-fixing forests.

Drying floodplains that were not inundated for more than 10 y were investigated to relate plant species and vegetation structure to time-since-fire for the southern Okavango Delta wetland in Botswana. The aims of the research were to study post-fire succession on savanna habitats in the Okavango Delta and to investigate the mechanisms behind vegetation changes with time-since-fire. We hypothesize that vegetation structure rather than species occurrence is affected by the fire event and that the driving forces of post-fire succession change from fire-driven to competition-driven with increasing time-since-fire. A total number of 153 study sites were investigated, representing areas of 2–12 y without a fire. Both woody and herbaceous plant species were recorded and cover/abundance values were measured. The vegetation changes with time-since-fire could be assigned to three different successional stages: (1) the post-fire conditions shortly after fire, supporting high species numbers due to open space and little competition; (2) the dominance of competitive perennial grass species (e.g. Urochloa mosambicensis) after 6–8 y; and (3) the enhanced establishment of woody species after about 10 y, creating new habitats in their vicinity. High species numbers were found after short and long fire-free periods, and different species occurred shortly after the fire event and at late stages of the post-fire succession. A variety of different inter-fire intervals is therefore expected to be responsible for sustaining plant species richness and habitat diversity in the study area. Post-fire succession could be described as not only being driven by the life history of the species, but also by seedbank dynamics and plant mobility in early successional stages and by competition and niche differentiation in late-successional stages.

In the Neotropics, crops that are grown in agroforestry systems with shade trees support high levels of bird diversity compared with crops grown without shade (Estrada & Coates-Estrada 2005, Faria et al. 2006). Several experiments in shaded coffee farms have explored how insectivorous birds reduce herbivore numbers and their damage to plants and have simultaneously approached ecological questions that are applied (e.g. biological control) and basic (e.g. tri-trophic interactions) (Borkhataria et al. 2006, Greenberg et al., Perfecto et al. 2004). Here we used exclosures to test whether birds lower the densities of herbivorous insects and reduce insect damage to cocoa (Theobroma cacao L., Sterculiaceae) foliage in shaded farms of western Panama. Although bird predation has been shown to reduce insect damage to crops in other systems (Mols & Visser 2002), we provide the first test for shade-grown cocoa.

Bird's nest ferns (Asplenium nidus complex) (Yatabe & Murakami 2003) are common epiphytes of the Old World tropics and house a high abundance of arthropods (Ellwood & Foster 2004). Through interception and retention of leaf litter (Paoletti et al. 1991, Piggott 1996, Richardson 1999), epiphytes interrupt litterfall dynamics (Clark et al. 1998, Nadkarni & Matelson 1991) and delay the return of nutrients to the forest floor (Nadkarni 1984). Precipitation percolating through the canopy as throughfall is enriched as nutrients are leached from plant surfaces (Levia & Frost 2006). Water flowing down the trunk of trees as stemflow is further enriched from prolonged contact and accumulated nutrient deposits on the trunk (Levia & Frost 2003, Liu et al. 2002). Epiphytes can alter stemflow nutrient concentrations by slowing water percolation and by nutrient uptake and release (Awasthi et al. 1995, Strigel et al. 1994).

African elephants Loxodonta africana (Blumenbach) may profoundly affect vegetation and associated animal bio-diversity in savannas (Conybeare 2004, Skarpe et al. 2004). Understanding the patterns of habitat use by elephants is crucial to predict their impacts on ecosystems (Ben-Shahar 1993, Nelleman et al. 2002), particularly now that many populations are recovering from past culling events or poaching outbreaks (Blanc et al. 2007). Surface water is one of the major constraints on elephant distribution (Chamaillé-Jammes et al. 2007, Stokke & du Toit 2002), and accordingly, elephant impacts are higher in the vicinity of water (Ben-Shahar 1993, de Beer et al. 2006). However, waterhole selection by elephant remains poorly understood. Weir (1972) showed in Hwange National Park (hereafter Hwange NP), Zimbabwe, that elephant numbers at waterholes over 24 h increased with the sodium concentration of water on nutrient-poor Kalahari sands. His work has become widely cited in elephant studies as it remains the only one, to the best of our knowledge, to have studied elephant use of waterholes in relation to the mineral concentration of water. Weir's work, however, took place when elephant densities in Hwange NP were low, likely below 0.5 elephants km−2 as estimated by aerial censuses (Williamson 1975). Since then, the elephant population has increased dramatically, particularly since the halt to culling operations in 1986 (Chamaillé-Jammes 2006, Cumming 1981). The present elephant density is much higher, estimated to be over 2 elephants km−2 (Chamaillé-Jammes et al. 2007, in press), and is one of the highest in the world (Blanc et al. 2007). Increased density may modify ecological constraints and affect the hierarchy of habitat selection processes (Morris 2003), and the extent to which water-nutrient selection still constrains elephant distribution at high population density – when their impact on savanna vegetation is the highest – remains unknown.