The native form of inhibitory serpins (serine protease
inhibitors) is not in the thermodynamically most stable
state but in a metastable state, which is critical to inhibitory
functions. To understand structural basis and functional
roles of the native metastability of inhibitory serpins,
we have been characterizing stabilizing mutations of human
α1-antitrypsin, a prototype inhibitory serpin.
One of the sites that has been shown to be critical in
stability and inhibitory activity of α1-antitrypsin
is Lys335. In the present study, detailed roles of this
lysine were analyzed by assessing the effects of 13 different
amino acid substitutions. Results suggest that size and
architect of the side chains at the 335 site determine
the metastability of α1-antitrypsin. Moreover,
factors such as polarity and flexibility of the side chain
at this site, in addition to the metastability, seem to
be critical for the inhibitory activity. Substitutions
of the lysine at equivalent positions in two other inhibitory
serpins, human α1-antichymotrypsin and human
antithrombin III, also increased stability and decreased
inhibitory activity toward α-chymotrypsin and thrombin,
respectively. These results and characteristics of lysine
side chain, such as flexibility, polarity, and the energetic
cost upon burial, suggest that this lysine is one of the
structural designs in regulating metastability and function
of inhibitory serpins in general.