Simplified models like the shallow water equations (SWE) are commonly adopted for describing a wide range of free surface flow problems, like flows in rivers, lakes, estuaries, or coastal areas. In the literature, numerical methods for the SWE are mostly mesh-based. However, this macroscopic approach is unable to accurately represent the complexity of flows near coastlines, where waves nearly break. This fact prompted the idea of coupling the mesh-based SWE model with a meshless particle method for solving the Euler equations. In a previous paper, a method to couple the staggered scheme SWE and the smoothed particle hydrodynamics (SPH) Euler equations was developed and discussed. In this article, this coupled model is used for simulating solitary wave run-up on a sloping beach. The results show strong agreement with the experimental data of Synolakis. Simulations of wave overtopping over a seawall were also performed.

This paper develops Runge-Kutta PK -based central discontinuous Galerkin (CDG) methods with WENO limiter for the one- and two-dimensional special relativistic hydrodynamical (RHD) equations, K = 1,2,3. Different from the non-central DG methods, the Runge-Kutta CDG methods have to find two approximate solutions defined on mutually dual meshes. For each mesh, the CDG approximate solutions on its dual mesh are used to calculate the flux values in the cell and on the cell boundary so that the approximate solutions on mutually dual meshes are coupled with each other, and the use of numerical flux will be avoided. The WENO limiter is adaptively implemented via two steps: the “troubled” cells are first identified by using a modified TVB minmod function, and then the WENO technique is used to locally reconstruct new polynomials of degree (2K+1) replacing the CDG solutions inside the “troubled” cells by the cell average values of the CDG solutions in the neighboring cells as well as the original cell averages of the “troubled” cells. Because the WENO limiter is only employed for finite “troubled” cells, the computational cost can be as little as possible. The accuracy of the CDG without the numerical dissipation is analyzed and calculation of the flux integrals over the cells is also addressed. Several test problems in one and two dimensions are solved by using our Runge-Kutta CDG methods with WENO limiter. The computations demonstrate that our methods are stable, accurate, and robust in solving complex RHD problems.

The paper develops high order accurate Runge-Kutta discontinuous local evolution Galerkin (RKDLEG) methods on the cubed-sphere grid for the shallow water equations (SWEs). Instead of using the dimensional splitting method or solving one-dimensional Riemann problem in the direction normal to the cell interface, the RKDLEG methods are built on genuinely multi-dimensional approximate local evolution operator of the locally linearized SWEs on a sphere by considering all bicharacteristic directions. Several numerical experiments are conducted to demonstrate the accuracy and performance of our RKDLEG methods, in comparison to the Runge-Kutta discontinuous Galerkin method with Godunov's flux etc.

We analyze in this paper the pressure splitting scheme of a partitioned semi-implicit coupling algorithm for fluid-structure interaction (FSI) simulation. The semi-implicit coupling algorithm is developed on the ground of the artificial compressibility characteristic-based split (AC-CBS) scheme that serves not only for the fluid subsystem but also for the global FSI system. As the dual-time stepping procedure recommended for quasi-incompressible flows is incorporated into the implicit coupling stage, the fluctuating pressure may be unusually susceptible to the AC coefficient. Moreover, it is not trivial to devise an optimal AC formulation for pressure estimation. Instead, we consider a stabilized second-order pressure splitting scheme in the AC-CBS-based partitioned semi-implicit coupling algorithm. Computer simulation of a benchmark FSI experiment demonstrates that good agreement is exposed between the available and present data.

This paper is concerned with numerical methods for the Navier-Stokes-Nernst-Planck-Poisson equation system. The main goal is to construct and analyze some stable time stepping schemes for the time discretization and use a spectral method for the spatial discretization. The main contribution of the paper includes: 1) an useful stability inequality for the weak solution is derived; 2) a first order time stepping scheme is constructed, and the non-negativity of the concentration components of the discrete solution is proved. This is an important property since the exact solution shares the same property. Moreover, the stability of the scheme is established, together with a stability condition on the time step size; 3) a modified first order scheme is proposed in order to decouple the calculation of the velocity and pressure in the fluid field. This new scheme equally preserves the non-negativity of the discrete concentration solution, and is stable under a similar stability condition; 4) a stabilization technique is introduced to make the above mentioned schemes stable without restriction condition on the time step size; 5) finally we construct a second order finite difference scheme in time and spectral discretization in space. The numerical tests carried out in the paper show that all the proposed schemes possess some desirable properties, such as conditionally/unconditionally stability, first/second order convergence, non-negativity of the discrete concentrations, and so on.

A comparative study of two classes of third-order implicit time integration schemes is presented for a third-order hierarchical WENO reconstructed discontinuous Galerkin (rDG) method to solve the 3D unsteady compressible Navier-Stokes equations: — 1) the explicit first stage, single diagonally implicit Runge-Kutta (ESDIRK3) scheme, and 2) the Rosenbrock-Wanner (ROW) schemes based on the differential algebraic equations (DAEs) of Index-2. Compared with the ESDIRK3 scheme, a remarkable feature of the ROW schemes is that, they only require one approximate Jacobian matrix calculation every time step, thus considerably reducing the overall computational cost. A variety of test cases, ranging from inviscid flows to DNS of turbulent flows, are presented to assess the performance of these schemes. Numerical experiments demonstrate that the third-order ROW scheme for the DAEs of index-2 can not only achieve the designed formal order of temporal convergence accuracy in a benchmark test, but also require significantly less computing time than its ESDIRK3 counterpart to converge to the same level of discretization errors in all of the flow simulations in this study, indicating that the ROW methods provide an attractive alternative for the higher-order time-accurate integration of the unsteady compressible Navier-Stokes equations.

In this paper, we present two-level defect-correction finite element method for steady Navier-Stokes equations at high Reynolds number with the friction boundary conditions, which results in a variational inequality problem of the second kind. Based on Taylor-Hood element, we solve a variational inequality problem of Navier-Stokes type on the coarse mesh and solve a variational inequality problem of Navier-Stokes type corresponding to Newton linearization on the fine mesh. The error estimates for the velocity in the H1 norm and the pressure in the L2 norm are derived. Finally, the numerical results are provided to confirm our theoretical analysis.

The paper addresses the construction of a non spurious mixed spectral finite element (FE) method to problems in the field of computational aeroacoustics. Based on a computational scheme for the conservation equations of linear acoustics, the extension towards convected wave propagation is investigated. In aeroacoustic applications, the mean flow effects can have a significant impact on the generated sound field even for smaller Mach numbers. For those convective terms, the initial spectral FE discretization leads to non-physical, spurious solutions. Therefore, a regularization procedure is proposed and qualitatively investigated by means of discrete eigenvalues analysis of the discrete operator in space. A study of convergence and an application of the proposed scheme to simulate the flow induced sound generation in the process of human phonation underlines stability and validity.

In this paper, we study the effects of inserted needle on the subcutaneous interstitial flow. A goal is to describe the physical stress affecting cells during acupuncture treatment. The model consists of the convective Brinkman equations to describe the flow through a fibrous medium. Numerical studies in FreeFem++ are performed to illustrate the acute physical stress developed by the implantation of a needle that triggers the physiological reactions of acupuncture. We emphasize the importance of numerical experiments for advancing in modeling in acupuncture.

(Aims) Acupuncture was employed since 2 millenaries, but the underlying mechanisms are not globally handled. The present study is aimed at proposing an explanation by pointing out involved processes and a convincing modeling to demonstrate its efficiency when carried out by trained practitioners.

(Method) In the absence of global knowledge of any mechanism explaining the acupuncture process, a biological model is first developed, based on stimulation in a given domain around the needle tip of a proper mastocyte population by a mechanical stress, electrical, electromagnetic, or heat field. Whatever the type of mechanical or physical stimuli, mastocytes degranulate. Released messengers either facilitate the transfer of main mediators, or target their cognate receptors of local nerve terminals or after being conveyed by blood their receptors on cerebral cells. Signaling to the brain is fast by nervous impulses and delayed by circulating messengers that nevertheless distribute preferentially in the brain region of interest due to hyperemia. The process is self-sustained due to mastocyte chemotaxis from the nearby dense microcirculatory circuit and surrounding mastocyte pools, which are inadequate for acupuncture, but serve as a signal relay. A simple mathematical model is solved analytically. Numerical simulations are also carried out using the finite element method with mesh adaptivity.

(Results) The analytical solution of the simple mathematical model demonstrates the conditions filled by a mastocyte population to operate efficiently. A theorem gives the blow-up condition. This analytical solution serves for validation of numerical experiments. Numerical simulations show that when the needle is positioned in the periphery of the acupoint or outside it, the response is too weak. This explains why a long training is necessary as the needle implantation requires a precision with a magnitude of the order of 1mm.

(Conclusion) The acupoint must contain a highly concentrated population of mastocytes (e.g., very-high–amplitude, small-width Gaussian distribution) to get an initial proper response. Permanent signaling is provided by chemotaxis and continuous recruitment of mastocytes. Therefore, the density and distribution of mastocytes are crucial factors for efficient acupuncture as well as availability of circulating and neighboring pools of mastocytes.

Based on two-grid discretization, a simplified parallel iterative finite element method for the simulation of incompressible Navier-Stokes equations is developed and analyzed. The method is based on a fixed point iteration for the equations on a coarse grid, where a Stokes problem is solved at each iteration. Then, on overlapped local fine grids, corrections are calculated in parallel by solving an Oseen problem in which the fixed convection is given by the coarse grid solution. Error bounds of the approximate solution are derived. Numerical results on examples of known analytical solutions, lid-driven cavity flow and backward-facing step flow are also given to demonstrate the effectiveness of the method.

In this paper, a computational model for the natural state of an inextensible capsule has been successfully combined with a spring model of the capsule membrane to simulate the motion of the capsule in two-dimensional shear flow. Besides the viscosity ratio of the internal fluid and external fluid of the capsule, the natural state also plays a role for having the transition between two well known motions, tumbling and tank-treading (TT) with the long axis oscillates about a fixed inclination angle (a swinging mode), when varying the shear rate. Between tumbling and tank-treading, the intermittent behavior has been obtained for the capsule with a biconcave rest shape. The estimated critical value of the swelling ratio for having the intermittent transition behavior is less than 0.7, i.e., the capsules with rest shape closer to a full disk do not have the intermittent behavior in shear flow. The intermittent dynamics of the capsule in the transition region is a mixture of tumbling and TT with a swinging mode. Just like the motion of TT with a swing mode, which can be viewed as a tank-treading with an incomplete tumbling, the membrane tank-treads backward and forward within a small range during the tumbling motion.

We describe in this work a discontinuous-Galerkin Finite-Element method to approximate the solutions of a new family of 1d Green-Naghdi models. These new models are shown to be more computationally efficient, while being asymptotically equivalent to the initial formulation with regard to the shallowness parameter. Using the free surface instead of the water height as a conservative variable, the models are recasted under a pre-balanced formulation and discretized using a nodal expansion basis. Independently from the polynomial degree in the approximation space, the preservation of the motionless steady-states is automatically ensured, and the water height positivity is enforced. A simple numerical procedure devoted to stabilize the computations in the vicinity of broken waves is also described. The validity of the resulting model is assessed through extensive numerical validations.

In this paper we propose a general framework for the uncertainty quantification of quantities of interest for high-contrast single-phase flow problems. It is based on the generalized multiscale finite element method (GMsFEM) and multilevel Monte Carlo (MLMC) methods. The former provides a hierarchy of approximations of different resolution, whereas the latter gives an efficient way to estimate quantities of interest using samples on different levels. The number of basis functions in the online GMsFEM stage can be varied to determine the solution resolution and the computational cost, and to efficiently generate samples at different levels. In particular, it is cheap to generate samples on coarse grids but with low resolution, and it is expensive to generate samples on fine grids with high accuracy. By suitably choosing the number of samples at different levels, one can leverage the expensive computation in larger fine-grid spaces toward smaller coarse-grid spaces, while retaining the accuracy of the final Monte Carlo estimate. Further, we describe a multilevel Markov chain Monte Carlo method, which sequentially screens the proposal with different levels of approximations and reduces the number of evaluations required on fine grids, while combining the samples at different levels to arrive at an accurate estimate. The framework seamlessly integrates the multiscale features of the GMsFEM with the multilevel feature of the MLMC methods following the work in [26], and our numerical experiments illustrate its efficiency and accuracy in comparison with standard Monte Carlo estimates.

A Newton/LU-SGS (lower-upper symmetric Gauss-Seidel) iteration implicit method was developed to solve two-dimensional Euler and Navier-Stokes equations by the DG/FV hybrid schemes on arbitrary grids. The Newton iteration was employed to solve the nonlinear system, while the linear system was solved with LU-SGS iteration. The effect of several parameters in the implicit scheme, such as the CFL number, the Newton sub-iteration steps, and the update frequency of Jacobian matrix, was investigated to evaluate the performance of convergence history. Several typical test cases were simulated, and compared with the traditional explicit Runge-Kutta (RK) scheme. Firstly the Couette flow was tested to validate the order of accuracy of the present DG/FV hybrid schemes. Then a subsonic inviscid flow over a bump in a channel was simulated and the effect of parameters was investigated also. Finally, the implicit algorithm was applied to simulate a subsonic inviscid flow over a circular cylinder and the viscous flow in a square cavity. The numerical results demonstrated that the present implicit scheme can accelerate the convergence history efficiently. Choosing proper parameters would improve the efficiency of the implicit scheme. Moreover, in the same framework, the DG/FV hybrid schemes are more efficient than the same order DG schemes.

Computational modeling and simulation are presented on the motion of red blood cells behind a moving interface in a capillary. The methodology is based on an immersed boundary method and the skeleton structure of the red blood cell (RBC) membrane is modeled as a spring network. As by the nature of the problem, the computational domain is moving with either a designated RBC or an interface in an infinitely long two-dimensional channel with an undisturbed flow field in front of the computational domain. The tanking-treading and the inclination angle of a cell in a simple shear flow are briefly discussed for the validation purpose. We then present and discuss the results of the motion of red blood cells behind a moving interface in a capillary, which show that the RBCs with higher velocity than the interface speed form a concentrated slug behind the moving interface.

A semi-discrete scheme about time for the non-stationary Navier-Stokes equations is presented firstly, then a new fully discrete finite volume element (FVE) formulation based on macroelement is directly established from the semi-discrete scheme about time. And the error estimates for the fully discrete FVE solutions are derived by means of the technique of the standard finite element method. It is shown by numerical experiments that the numerical results are consistent with theoretical conclusions. Moreover, it is shown that the FVE method is feasible and efficient for finding the numerical solutions of the non-stationary Navier-Stokes equations and it is one of the most effective numerical methods among the FVE formulation, the finite element formulation, and the finite difference scheme.

This paper presents a new Lagrangian type scheme for solving the Euler equations of compressible gas dynamics. In this new scheme the system of equations is discretized by Runge-Kutta Discontinuous Galerkin (RKDG) method, and the mesh moves with the fluid flow. The scheme is conservative for the mass, momentum and total energy and maintains second-order accuracy. The scheme avoids solving the geometrical part and has free parameters. Results of some numerical tests are presented to demonstrate the accuracy and the non-oscillatory property of the scheme.

In this paper we present recent developments concerning a Cell-Centered Arbitrary Lagrangian Eulerian (CCALE) strategy using the Moment Of Fluid (MOF) interface reconstruction for the numerical simulation of multi-material compressible fluid flows on unstructured grids in cylindrical geometries. Especially, our attention is focused here on the following points. First, we propose a new formulation of the scheme used during the Lagrangian phase in the particular case of axisymmetric geometries. Then, the MOF method is considered for multi-interface reconstruction in cylindrical geometry. Subsequently, a method devoted to the rezoning of polar meshes is detailed. Finally, a generalization of the hybrid remapping to cylindrical geometries is presented. These explorations are validated by mean of several test cases using unstructured grid that clearly illustrate the robustness and accuracy of the new method.

In this paper, a finite element method is proposed to investigate multiple solutions of the Navier-Stokes equations for an unsteady, laminar, incompressible flow in a porous expanding channel. Dual or triple solutions for the fixed values of the wall suction Reynolds number R and the expansion ratio α are obtained numerically. The computed multiple solutions for the symmetric flow are validated by comparing them with approximate analytic solutions obtained by the similarity transformation and homotopy analysis method. Unlike previous works, our method deals with the Navier-Stokes equations directly and thus has no similarity and other restrictions as in previous works. Finally we use the method to study multiple solutions for three cases of the asymmetric flow (which has not been studied before using the similarity-type techniques).