Animal models are a key component of translational medicine, helping transfer scientific findings into practical applications for human health. A fundamental principle of research ethics involves weighing the benefits of the research to society against the burden imposed on the animals used for scientific purposes. The utilisation of wild animals for research requires evaluation of the effects of capture and invasive sampling. Determining the severity and duration of these interventions on the animal’s physiology and behaviour allows for refining study methodology and for excluding or accounting for biased data. In this study, 39 Scandinavian brown bears (Ursus arctos) captured either while hibernating in winter or via helicopter in summer and that underwent surgery as part of a human health project had their movement, body temperature and timing of onset of hibernation compared with those of 14 control bears that had not been captured during the same period. Bears captured in winter and summer showed decreased movement from den exit until late summer, compared to those in the control group. Bears captured in summer showed reduced movement and body temperature for at least, respectively, 14 and 3 days, with an 11% decrease in hourly distance, compared to pre-capture levels, but did not differ in the timing of hibernation onset. We reveal that brown bear behaviour and physiology can be altered in response to capture and surgery for days to months, post-capture. This has broad implications for the conclusions of wildlife studies that rely upon invasive sampling.

A current programme of wildlife utilisation in the Andean region involves the capture of wild vicunas, their shearing, transport and, in some cases, captive farming. The effects of these interventions on the physiology, and thus welfare, of wild vicunas are unknown. As a first step to quantifying and thus mitigating any adverse welfare consequences of this harvest, we measured the immediate and longer-term physical and physiological effects of capture, shearing and transport. A sample of juvenile male vicunas was captured. Six were shorn at the capture site, six after two weeks in captivity, and the remaining seven animals were kept as controls for 39 days. In general, vicunas showed changes in blood glucose, packed cell volume, cortisol, and neutrophil:lymphocyte ratios within 4-6 h following capture. Creatine kinase was also affected by capture and transport, showing a peak plasma level 24 h after capture, which was followed by a peak plasma level of aspartate aminotransferase four days after capture and transport. After 12 days in captivity, all of the vicunas showed physiological parameters close to expected baseline values for the species. We could detect no differences in physiological parameters between animals that were captured, sheared and transported and those that were only captured and transported. Similarly, we could detect no differences in most responses of vicunas between those sheared after 12 days in captivity and a control group held under similar conditions but from which blood was sampled without shearing. A further comparison between animals sheared immediately after capture and animals sheared after 12 days in captivity revealed that creatine kinase levels were higher in the former group. During transport prior to release back into the wild, only minor injuries (lip bleeding and limb contusions) and a significant increase in rectal temperature were observed. Our results provide a basis for recommendations to improve the welfare of vicunas during the wool harvest, and provide baseline and stress-response data to serve as reference points for further studies of vicuna welfare.

Lichen extinction occurs at rapid rates as a result of human activity, although species could potentially be rescued by conservation management based on ecophysiological knowledge. The boreal old forest cyanolichen Erioderma pedicellatum currently occurs in few sites worldwide. To protect it from extinction, it is essential to learn more about it. The last remaining good European site is a canyon with a waterfall, in a low-rainfall region of Norway. Here, a spatially restricted population of 1500–2000 thalli dominates the epiphytic vegetation of a small number of Picea abies canopies. We were able to document that 1) E. pedicellatum grew on thin branches with higher bark pH than is normal for P. abies in a canyon that provided an unusual combination of very high light, high air humidity, and cool temperatures in the growing season. However, the species did not inhabit the main waterfall spray zone. 2) Erioderma pedicellatum had a high light saturation point, high CO2 uptake at high light (≥ 600 μmol m−2 s−1) and cool temperatures (5–20 °C), and experienced strong suprasaturation depression of photosynthesis when fully hydrated. 3) It showed good tolerance of desiccation and high light; it was slightly more tolerant than the morphologically similar, but more common cyanolichen Pectenia plumbea. 4) The European population in its sunny habitat had higher water holding capacity than previously recorded in slightly shaded rainforest populations in Newfoundland, consistent with acclimation to compensate for high evaporative demands. Understanding the ecological niche and responses to critical environmental factors is essential for action plans to avoid extinction of E. pedicellatum. Methods used in this study could also be applicable for ecological understanding of other threatened lichen species.

Weeds are often more competitive with crops at higher soil nutrient levels. This can result in increased dependency on herbicides and tillage to maintain adequate weed control. A number of studies have shown weeds accumulate higher concentrations of nitrogen, phosphorus, potassium, calcium, and magnesium than crops, thus depleting soil nutrient levels more quickly and reducing crop yield. Understanding basic mechanisms and timing of nutrient uptake in weeds and crops can lead to fertilization strategies which will enhance the competitive ability of crops while reducing interference from weeds. Such strategies can include deep band application of fertilizers to the crop row, as opposed to broadcast applications. Banding techniques also reduce the potential for nitrate contamination of surface or groundwater. The addition of nitrification inhibitors or increasing the proportion of nitrogen as ammonium or urea in fertilizer mixtures can restrict growth of ammonium- or urea-sensitive weeds. The timing of fertilizer applications can take advantage of maximal rates of nutrient uptake into crop roots at specific developmental stages. In addition, nutrient use efficiency can be enhanced by choosing appropriate crop cultivars, maintaining effective weed control practices, or altering row spacing or seeding rate to increase accumulation of nitrogen, phosphorus, and potassium in crops.

Weed scientists are trained broadly in agronomy, botany, chemistry, soils, and other agricultural disciplines. The study of weeds, rather than the techniques used or the questions asked, unifies weed scientists around a common focus. It is often difficult for weed scientists to identify closely with any one scientific discipline, since the techniques and questions of many disciplines are needed to address problems posed by weeds. One discipline with relevance and potential for addressing weed science problems is physiological ecology. The study of the functioning or adaptation of plants in relation to environmental influences has its roots in both classical ecology and experimental physiology. Application of this discipline to weed science may take an environmental approach (e.g., studying limiting factors in the environment), a physiological approach (e.g., studying the responses of critical plant processes to environmental stress), or a more autecological approach (e.g., studying the physiological basis for the adaptation of a particular weed to a particular habitat). Many methodologies and technologies are available for both field and laboratory investigations. For example, photosynthesis, a major determinant of plant growth, can be investigated in the field at the leaf, plant, or canopy level using plant growth analysis or a portable infrared gas analyzer (IRGA) and appropriate assimilation chambers. Investigations of photosynthesis in the laboratory can focus on the plant, leaf, chloroplast, or thylakoid level using an IRGA or the techniques of polarography (measurement of evolved oxygen) or fluorometry. Application of such approaches to weed science should improve our understanding of the basis for particular weed problems and thus broaden our options for management.

Detailed knowledge about the environmental conditions required for weed seed germination and establishment in soil is an important prerequisite for the development of integrated and biological weed control strategies. Germination and establishment of Amaranthus retroflexus were studied at different temperatures, planting depths, soil types, nitrogen supply, and water potentials. The minimum temperature for seed germination was > 5 C; maximum germination occurred between 35 and 40 C. At temperatures between 25 and 35 C, an additive effect on germination rate was observed when temperature and water availability were increased. For all soils tested, the percentage emergence of seeds placed on the soil surface and 4 cm deep was significantly lower than seeds placed between 0.5 and 3 cm. Emergence in the four sandy soils was generally greater than in the two heavier soils included in the study. There was a highly significant interaction between seed depth and soil type. Plant growth was also greatest in the lighter soils. Plant height, number of leaves, leaf area, fresh and dry weight, and nitrogen and carbon percentage in plant tissues of A. retroflexus increased significantly with increasing soil nitrogen supply.

Cost-effective weed management requires accurate estimates of yield and the potential yield loss resulting from weed infestations. However, crop yield and the effects of weeds are highly variable across years and locations. Ecophysiological models may be useful for predicting the effects of environment and management on crop and weed growth and competitive ability. Ability of the model INTERCOM to predict corn (Zea mays) growth and yield, velvetleaf (Abutilon theophrasti) interference on corn yield loss, and single-year economic threshold velvetleaf density (Te) was evaluated using 13 data sets collected in four states. Predicted and observed monoculture corn total aboveground biomass and leaf area index were in close agreement for most of the growing season. Predicted and observed weed-free corn yields were in agreement for yields ranging from 8 to 13 Mg ha−1 but were over- and underpredicted under low-yielding and near-optimal production conditions, respectively. Predicted and observed corn yield loss agreed well across the full range of observed velvetleaf densities for five to nine location years, depending on the performance criterion used. Estimates of Te calculated from predicted weed-free yield and yield loss relationships were an average of 6% smaller than those calculated from observed data, indicating that the model predicts a conservative value of Te in most cases. Although results are encouraging, they indicate that further research is needed to improve the capacity of INTERCOM for predicting weed-free yield and corn–velvetleaf interference.

Weeds represent a major cause of agricultural losses worldwide. Most weeds share a common set of life history characteristics that predispose them to weediness, two of which are self-compatibility, which allows for ease of colonization through reproductive assurance, and high trait plasticity, which allows for tolerance of a wide variety of environments and abiotic conditions. However, self-fertilization typically comes at the cost of inbreeding depression. This study investigates the role of inbreeding depression and trait plasticity under abiotic stress in the tall morningglory, a widespread self-compatible agricultural weed in the southeastern United States. Results show very little inbreeding depression in this species, likely due to purging of deleterious alleles through repeated founder events in agricultural landscapes. In contrast, abiotic stress induced substantial plasticity in ecophysiological traits, reproductive traits, and biomass allocation. In terms of performance, drought sharply impacted reproduction but not vegetative growth, and nitrogen limitation sharply impacted both. These findings are applicable to the control of weedy morningglory and underscore the usefulness of evolutionary ecology to weed management.

Tropical montane cloud forests (TMCFs) are dynamic ecosystems defined by frequent, but intermittent, contact with fog. The resultant microclimate can vary considerably over short spatial and temporal scales, affecting the ecophysiology of TMCF plants. We synthesized research to date on TMCF carbon and water fluxes at the scale of the leaf, plant and ecosystem and then contextualized this synthesis with tropical lowland forest ecosystems. Mean light-saturated photosynthesis was lower than that of lowland forests, probably due to the effects of persistent reduced radiation leading to shade acclimation. Scaled to the ecosystem, measures of annual net primary productivity were also lower. Mean rates of transpiration, from the scale of the leaf to the ecosystem, were also lower than in lowland sites, likely due to lower atmospheric water demand, although there was considerable overlap in range. Lastly, although carbon use efficiency appears relatively invariant, limited evidence indicates that water use efficiency generally increases with altitude, perhaps due to increased cloudiness exerting a stronger effect on vapour pressure deficit than photosynthesis. The results reveal clear differences in carbon and water balance between TMCFs and their lowland counterparts and suggest many outstanding questions for understanding TMCF ecophysiology now and in the future.

Solar irradiance and precipitation are the most likely drivers of the seasonal variation of net primary productivity (NPP) in tropical forests. Since their roles remain poorly understood, we use litter traps, dendrometer bands and census data collected from one hectare permanent plots to quantify the seasonality of above-ground NPP components and weather parameters in 13 sites distributed along a 2800-m altitudinal gradient ranging from lowland Amazonia to the high Andes. We combine canopy leaf area index and litterfall data to describe the seasonality of canopy production. We hypothesize that solar irradiance is the primary driver of canopy phenology in wetter sites, whereas precipitation drives phenology in drier systems. The seasonal rhythm of canopy NPP components is in synchrony with solar irradiance at all altitudes. Leaf litterfall peaks in the late dry season, both in lowland (averaging 0.54 ± 0.08 Mg C ha y−1, n = 5) and montane forests (averaging 0.29 ± 0.04 Mg C ha y−1, n = 8). Peaks in above-ground coarse woody NPP appears to be triggered by the onset of rainfall in seasonal lowland rain forests (averaging 0.26 ± 0.04 Mg C ha y−1, n = 5, in November), but not in montane cloud forests.

Some lichens that occur in mountains and arid regions have developed an unusual anatomy resembling window-leaved plants. In these lichens, algal cells occur in thick vertical stacks (algal stacks) separated by vertical channels of light-transferring fungal hyphae (fungal stacks). We present experimental evidence that this anatomy permits higher rates of area-based CO2 assimilation in strong light, but that it also leads to higher respiration resulting in higher compensation irradiance. The net effect of this anatomy must be beneficial in regions of high insolation, as it has arisen many times in different parts of the world, and in unrelated lichens, and these lichens often dominate the communities in which they occur.

The impact of an alien species is correlated with its abundance and potential to colonisenew environments. Consequently, the crucial aspects that give a mytilid species invasivepotential include its strength and capacity for adhesion to a wide variety of substratesand its ecological tolerance to environmental conditions. The alien black pygmy musselXenostrobus securis settles together with the indigenous and raftcultured mussel Mytilus galloprovincialis on hard substrates of the innercoastline of the Ría de Vigo (Atlantic Coast NW Spain). Key parameters for the ecologicalsuccess of these species could include their byssus structure and ecological plasticity.In this study, we assessed their comparative ability to attach to different substratesunder different environmental conditions, using both in situ and laboratory approaches.Byssus threads secreted by X. securis were found to be extremely thin andtheir thickness did not vary with mussel size. This thinness of byssus filaments inX. securis was compensated by the secretion of a huge number (up tothousand of byssus filaments). Although no increase in attachment strength was found withincreasing mussel size in this species, multiple byssus thread secretion might be a keyfactor in the successful invasion of inner areas of the estuary. Furthermore, X.securis exposes a much lower shell area to lift and drag forces in musselconglomerates. By contrast, the indigenous species M. galloprovincialissecretes thicker byssus threads, which provide stronger in situ attachmentdisplaying a linear increase in strength relative to the size of mussels. The exposure ofboth mytilid species to different abiotic factors in the laboratory confirmed the weakerbyssus secretion and limited variation in attachment strength in the alien species. On onehand, X. securis seemed to be better adapted to life on soft bottoms andnot capable of much plasticity when attached to different substrates. However, X.securis might be also well adapted to variable environmental conditions, e.g.,salinity fluctuations, with no need to modify its byssus properties to ensure secureattachment. Attachment strength of M. galloprovincialis was higher thanX. securis in all abiotic conditions tested. Results are discussed inrelation to the ecological tolerance and impact of these mytilid species.

Testate amoebae (TA) are a group of free-living protozoa, important in ecology and paleoecology. Testate amoebae taxonomy is mainly based on the morphological features of the shell, as examined by means of light microscopy or (environmental) scanning electron microscopy (SEM/ESEM). We explored the potential applications of confocal laser scanning microscopy (CLSM), two photon excitation microscopy (TPEM), phase contrast, differential interference contrast (DIC Nomarski), and polarization microscopy to visualize TA shells and inner structures of living cells, which is not possible by SEM or environmental SEM. Images captured by CLSM and TPEM were utilized to create three-dimensional (3D) visualizations and to evaluate biovolume inside the shell by stereological methods, to assess the function of TA in ecosystems. This approach broadens the understanding of TA cell and shell morphology, and inner structures including organelles and endosymbionts, with potential implications in taxonomy and ecophysiology.

Hemigrapsus crenulatus is an abundant and frequent decapod crustacean inhabiting estuarine environments, where it must tolerate large shifts in salinity. The present study evaluates the effect of salinity (5, 13, 21 and 30 psu) on the adult physiological processes related to the energy balance. The growth potential (SFG) and the respired oxygen:excreted nitrogen ratio were used as indices of stress. Ingestion, excretion and respiration rates showed a significant dependence on salinity, being higher at low salinities. The assimilation efficiency remained constant along the studied salinity gradient. The assimilation and ingestion rates were inversely related with the salinity. Given this scenario, the growth potential remained constant within the studied salinity gradient, as did the oxygen:nitrogen ratio. The results suggest that the increased energy losses at low salinity due to respiration and excretion are compensated by an increment in the ingestion rate, contributing to the success of H. crenulatus in dynamic habitats such as estuaries.

The aim of the study was to design and put together a compact, easy-to-assemble and cost-efficient incubation system for aquatic plant photosynthesis measurements. Incubation tank consisting of glass sidewalls and mirror inner walls was constructed. The tank was split into six incubation cells and two water collecting cells. Each incubation cell was built of mirror with reflective side turned into the incubation cells to prevent the self shading of plants and minimized the variance of light intensity within the cell. The wall of each incubation cell facing the source of light was made of 3 mm glass and was covered by light absorbing film. To produce different light intensities single light source (fluorescent tubes) and light absorbing film (3M Scotchtint™ Sun Control RE50NEARL) were chosen. The sidewall of each incubation cell was covered with metal-coated neutral sun control film to produce six distinct light intensities. The different transparency of the sidewalls was achieved by lamination of the chosen film in increasing numbers of layers. The effect of the lamination on optical properties of the film was also studied. The variation of photon flux density within a cell was 3.9%. Continuous use of the system and occasional repetitive measurements of film's transparency showed that it maintained its neutral optical properties over a long period of time.

The Tabernas badlands in semiarid south-east Spain is one of the driest regions in Europe with a mean annual precipitation of c. 240 mm. The landscape is deeply dissected, with canyons, ramblas and sparsely vegetated eroded badland slopes. The vegetation is predominantly a biological soil crust consisting of different types of lichen-rich communities, one of the more conspicuous being dominated by Diploschistes diacapsis (Ach.) Lumbsch. This lichen is mainly restricted to the north- facing slopes, where it forms extensive whitish carpets and probably plays an important role in preventing erosion of the slopes and allowing plant colonization. South-facing slopes are much more eroded and generally lack vegetation. %The photosynthetic performance of north (shade) and south-facing (sun) populations of D. diacapsis was studied to determine if these different populations showed any adaptations to the microclimatic conditions of their individual habitats. The response of CO2 exchange to light intensity, temperature and water content was measured under controlled conditions in the laboratory. Dry weight-based net photosynthetic rates were higher in the southern-exposed population but quantum efficiency, and light compensation points were similar. Thallus weight per unit area (LMA) was considerably higher for shade specimens but maximum water content and optimal water content were very similar and chlorophyll content on a dry weight basis was also similar. Chlorophyll content on an area basis was higher in the northern-exposed population and always much larger than those reported in other studies on the same species (up to 8 times larger) with the result that NP values on a chlorophyll basis were relatively low. The larger LMA meant that shade thalli stored more water per unit area which should ensure longer active periods than sun thalli. The results support a strategy pair of high NP and short active time versus low NP and long active time, both having been reported for other soil crust species. However, the visibly larger biomass of the shade D. diacapsis suggests that the lichen is at the limit of its adaptability in these habitats.

The photosynthetic light response of Amazonian semi-deciduous forest trees of the rain forest–savanna transition near Sinop Mato Grosso, Brazil was measured between July 2000 and September 2003 to test the hypothesis that the photosynthetic capacity of trees acclimated to different growth light environments will decline during the dry season. Maximum photosynthesis (Amax) and stomatal conductance (gmax) were significantly higher during the wet season; however, the physiological response to drought was not a clear function of growth light environment. For some species, such as Psychotria sp. growing in the mid-canopy, internal leaf CO2 concentration (Ci) was >30% lower during the dry season suggesting that declines in Amax were caused in part by stomatal limitations to CO2 diffusion. For other species, such as Brosimum lactescens growing at the top of the canopy, Tovomita schomburgkii growing in the mid-canopy, and Dinizia excelsa growing in the understorey, dry season Ci declined by <20% suggesting that factors independent of CO2 diffusion were more important in limiting Amax. Dry-season declines in gmax appeared to be important for maintaining a more consistent leaf water potential for some species (T. schomburgkii and D. excelsa) but not others (Psychotria sp.). These results indicate that while seasonal drought exerts an important limitation on the physiological capacity of semi-deciduous Amazonian forest trees, the mechanism of this limitation may differ between species.

The literature on the response of insect species to the changing environments experienced along altitudinal gradients is diverse and widely dispersed. There is a growing awareness that such responses may serve as analogues for climate warming effects occurring at a particular fixed altitude or latitude over time. This review seeks, therefore, to synthesise information on the responses of insects and allied groups to increasing altitude and provide a platform for future research. It focuses on those functional aspects of insect biology that show positive or negative reaction to altitudinal changes but avoids emphasising adaptation to high altitude per se. Reactions can be direct, with insect characteristics or performance responding to changing environmental parameters, or they can be indirect and mediated through the insect's interaction with other organisms. These organisms include the host plant in the case of herbivorous insects, and also competitor species, specific parasitoids, predators and pathogens. The manner in which these various factors individually and collectively influence the morphology, behaviour, ecophysiology, growth and development, survival, reproduction, and spatial distribution of insect species is considered in detail. Resultant patterns in the abundance of individual species populations and of community species richness are examined. Attempts are made throughout to provide mechanistic explanations of trends and to place each topic, where appropriate, into the broader theoretical context by appropriate reference to key literature. The paper concludes by considering how montane insect species will respond to climate warming.

A total of 135 bacterial strains were isolated from congelation (land fast) sea ice samples and ice algae biomass samples obtained from the coastal areas of the Vestfold Hills in East Antarctica (68°S, 78°E) during the summers of 1992–95. The sea ice isolates, along with reference strains. were analysed by numerical taxonomy and for DNA base composition in order to determine the biodiversity of sea ice bacteria. From these analyses 22 clusters of strains (phena) were obtained with most phena apparently representing novel bacterial taxa. The sea ice isolates could be categorized into three groups based on their ecophysiology: 1) slightly halophilic, psychrophilic bacteria often possessing fastidious growth requirements and which were predominantly isolated from sea ice algae biomass or from algae-rich ice samples; 2) halotolerant and psychrotolerant bacteria; and 3) non-halophilic bacteria isolated primarily from upper sections of congelation ice and other ice samples with low levcls of algal biomass.

The osmoregulatory function of common spiny mice Acomys cahirinus living on opposite slopes of the lower Nahal Oren (‘Evolution Canyon’) on mount Carmel, Israel, was investigated by increasing the salinity of the water source whilst maintaining a high-protein diet. The southern-facing slope (SFS) of this canyon differs from the northern-facing slope (NFS) as it receives considerably more solar radiation and consequently forms a more xeric, sparsely vegetated habitat. During the summer, mice living on the two opposite slopes significantly differed in their urine osmolality, which also increased significantly as dietary salinity increased. Offspring of wild-captured mice, born in captivity, and examined during the winter, continued to show a difference in osmoregulatory function depending on the slope of origin. However, they differed from wild-captured mice, as they did not respond to the increase in dietary salinity by increasing the concentration of their urine, but rather by increasing the volume of urine produced. This study shows that A. cahirinus occupying different microhabitats may exhibit differences in their ability to concentrate urine and thus in their ability to withstand xeric conditions. We suggest that they may also differ genetically, as offspring from the NFS and SFS retain physiological differences, but further studies will be needed to confirm this hypothesis.