Otolith morphological and microchemical analyses are relatively new scientific research methods used in fish stock evaluation and management. However, in Tunisia, only morphological methods have been used. The objective of this study was the Sarpa salpa stock discrimination of Djerba and Kerkennah by the otoliths morphological and microchemical analysis, while carrying out a fluctuating asymmetry analysis and a stock comparison of males and females for each population. The results revealed significant differences between the Djerba and Kerkennah populations, significant differences between the stocks of males and females in each population, and a highly significant fluctuating asymmetry for both populations. The results of the otolith morphological analysis were similar to those of the microchemical analysis. This result proves that both morphological and microchemical analyses are powerful tools for fish stock discrimination.

Saccular otolith shape and size were analysed for the first time in 120 adult individuals of D. vulgaris collected from two localities, the Bizerte and Ghar El Melh lagoons (north-east Tunisia). The objectives were (1) to examine the specific inter- and intra-individual variation in the otolith shape using elliptical Fourier analysis combined with measures of length (LO), width (WO) and area (AO); (2) to use the otolith shape and size analysis as a phenotypic-based approach to discriminate the stock structure of this species in the two localities to investigate whether they represent two separate stocks to inform on appropriate management procedures; and (3) to test for biases resulting from potential fluctuating asymmetry (FA) in the otolith size on the discrimination of stock structure. Discriminant function analysis performed with the normalized elliptical Fourier descriptors coefficients showed statistically significant differences (P < 0.0001) in the otolith contour shape, i.e. asymmetry, either between the left and right sides or between the same sides (left-left and right-right) within and among individuals of the two localities. Besides, a significant asymmetry (P < 0.05) was found in WO and AO among individuals within the Bizerte locality and in WO only within the Ghar El Melh locality. Moreover, significant FA was observed in the otolith size parameters among individuals of the two localities. This significant asymmetry detected in the otolith shape, as well as in the size due to FA, within and among individuals of D. vulgaris collected from the Bizerte and Ghar El Melh localities confirms that the two stocks could be discriminated from each other and should be managed separately. This asymmetry is discussed in light of the instability of development caused either by environmental stress associated with the variation in water temperature, salinity, depth, feeding conditions and pollutants that have led to abnormalities in the development of individuals or by the presence of poor living conditions for the larvae resulting from unfavourable environments.

Myxozoans have been successfully used as tags for fish stock identification around the world. However, few studies using myxozoan tags have been carried out in the Southern Atlantic, a region with complex oceanography that constitutes a potentially suitable scenario for testing the utility of myxozoans as indicators. Its usefulness was tested using six samples of Merluccius hubbsi in two different regions of the Argentine Sea. Generalized linear models were performed to assess the effects of fish size and sex, and year and region of capture and selected using the Information Theoretic approach. Three myxozoan species were recorded: Kudoa rosenbuschi, Myxoproteus meridionalis and Fabespora sp. Results of modelling species individually showed differential capabilities for detecting geographical population structure at different spatial scales, with K. rosenbuschi and Fabespora sp. allowing the discrimination of northern and southern stocks, but Fabespora sp. also as a promissory indicator of intrapopulation sub-structure due to different migratory routes during non-reproductive periods. This work confirms that myxozoans offer a set of suitable markers at different spatial scales, which can be selected individually or in any combination, depending on the geographical extent of the study, constituting tools adaptable to the objectives of further research on fish population structure.

The use of parasites as biological tags to discriminate among marine fish stocks has become a widely accepted method in fisheries management. Here, we first link this approach to its unstated ecological foundation, the decay in the similarity of the species composition of assemblages as a function of increasing distance between them, a phenomenon almost universal in nature. We explain how distance decay of similarity can influence the use of parasites as biological tags. Then, we perform a meta-analysis of 61 uses of parasites as tags of marine fish populations in multivariate discriminant analyses, obtained from 29 articles. Our main finding is that across all studies, the observed overall probability of correct classification of fish based on parasite data was about 71%. This corresponds to a two-fold improvement over the rate of correct classification expected by chance alone, and the average effect size (Zr = 0·463) computed from the original values was also indicative of a medium-to-large effect. However, none of the moderator variables included in the meta-analysis had a significant effect on the proportion of correct classification; these moderators included the total number of fish sampled, the number of parasite species used in the discriminant analysis, the number of localities from which fish were sampled, the minimum and maximum distance between any pair of sampling localities, etc. Therefore, there are no clear-cut situations in which the use of parasites as tags is more useful than others. Finally, we provide recommendations for the future usage of parasites as tags for stock discrimination, to ensure that future applications of the method achieve statistical rigour and a high discriminatory power.

The pout, Trisopterus luscus, is one of the most important gadoid fishcaptured by northern Portuguese traditional fisheries. In spite of a substantial decreasein fish catches, little data are available either on the population structure or on themanagement of the species. In this study, chemical analysis with inductively coupledplasma mass spectrometry of whole otoliths of 90 pouts (age group 2, total length:17.9–25.0 cm) provided location-specific elemental signatures. Sampling took place inshallow waters along the coastline in three fishing grounds off the Portuguese north coast(Viana do Castelo, Matosinhos and Aveiro) between February and March 2010. Otolithfingerprint analysis detected the presence of several informative trace elements. Molarconcentrations for each site were analysed through uni- and multivariate statisticaltests. Strontium, barium, magnesium and lithium (Sr, Ba, Mg and Li) differed significantlyamong locations, while no significant differences were found for manganese (Mn) and nickel(Ni). Canonical analysis allowed us to discriminate the tested individuals with respect totheir sampling origin with a mean classification accuracy of 69%. The observedsite-specific elemental differences in pout otoliths suggest a high level of site-fidelityin relation to their growing/feeding areas. Pouts from these locations can be regarded asa single, although not necessary homogenous, stock. Furthermore, this study also suggeststhat the populations of juvenile fish mix partially and, therefore, cannot be assumed tobe separate units for fisheries management purposes.

The understanding of the stock structure of a species is essential to effectively manage fisheries. Otolith shape analysis has been successfully applied in stock identification using the elliptic Fourier analysis. This method was used to assess possible differences in the otolith shape of Helicolenus dactylopterus caught around the Azores, Madeira and mainland Portugal. A total of 294 individuals ranging from 23 to 29 cm in total length, equally distributed by sex and area, were analysed. The multivariate analysis of variance performed on the otolith normalized elliptic Fourier descriptors (NEFDs) revealed significant differences for both area and sex, but no interaction was found between the two factors. In the canonical discriminant analysis an overall classification success of 69.4% and 66.7% was achieved for females and males respectively. These results suggest the usefulness of otolith shape analysis for stock differentiation of bluemouth from Portuguese waters.