This experiment was conducted to investigate whether dietary chenodeoxycholic acid (CDCA) could attenuate high-fat (HF) diet-induced growth retardation, lipid accumulation and bile acid (BA) metabolism disorder in the liver of yellow catfish Pelteobagrus fulvidraco. Yellow catfish (initial weight: 4·40 (sem 0·08) g) were fed four diets: the control (105·8 g/kg lipid), HF diet (HF group, 159·6 g/kg lipid), the control supplemented with 0·9 g/kg CDCA (CDCA group) and HF diet supplemented with 0·9 g/kg CDCA (HF + CDCA group). CDCA supplemented in the HF diet significantly improved growth performance and feed utilisation of yellow catfish (P < 0·05). CDCA alleviated HF-induced increment of hepatic lipid and cholesterol contents by down-regulating the expressions of lipogenesis-related genes and proteins and up-regulating the expressions of lipololysis-related genes and proteins. Compared with the control group, CDCA group significantly reduced cholesterol level (P < 0·05). CDCA significantly inhibited BA biosynthesis and changed BA profile by activating farnesoid X receptor (P < 0·05). The contents of CDCA, taurochenodeoxycholic acid and glycochenodeoxycholic acid were significantly increased with the supplementation of CDCA (P < 0·05). HF-induced elevation of cholic acid content was significantly attenuated by the supplementation of CDCA (P < 0·05). Supplementation of CDCA in the control and HF groups could improve the liver antioxidant capacity. This study proved that CDCA could improve growth retardation, lipid accumulation and BA metabolism disorder induced by HF diet, which provided new insight into understanding the physiological functions of BA in fish.

Investigations of free-living wild animals often involve capture, restraint or other forms of manipulation. There is a need, on both scientific and welfare grounds, to develop and to use less invasive techniques, especially for the assessment of health. Already some such procedures exist, ranging from observation of clinical signs to the laboratory examination and analysis of faeces and other naturally voided samples.

Minimally invasive and non-invasive health monitoring of vertebrate animals is outlined and examples are given of samples from mammals, birds, reptiles, amphibians and fish that can provide useful information.

Individual vertebrates are able to detect spatial and temporal (causal) order in their environment and deal with this knowledge emotionally. It is argued that this latter aspect is connected with the flexible or reversible way vertebrates may interact with their environment Because of this flexibility, uncertainty and changes therein can be experienced and shown by means of emotional expressions. It is this brain-behaviour organization that gives meaning to questions about welfare of individual vertebrates.

The late Pleistocene to early Holocene Champlain Sea provides a unique opportunity to study the development of marine ecosystems in a context of global climatic change. This study presents radiocarbon (14C) dates and stable isotope analyses on 15 vertebrate specimens from Champlain Sea sediments, including the Charlotte Whale, which is Vermont’s State marine fossil. Data are used in an attempt to investigate the timing of colonization and ecological dynamics in this newly formed sea. Using the average marine correction, 14C dates on four specimens likely calibrate prior to or possibly synchronous with the accepted origination date for the Champlain Sea, implying larger marine reservoir effects than the average marine correction in the vertebrate tissues. Without knowing the specific marine reservoir offsets, it is not possible to calculate the timing of colonization or its relation to concurrent climatic change. Observed lower δ13C and δ15N values in walruses, a fin whale, and a right whale support consumption of prey from lower trophic levels such as bivalve mollusks, krill, and copepods. Higher isotopic values in beluga whales and a bird, the thick-billed murre, support consuming fish, such as cod and capelin. These isotopic data show comparable values and relationships as observed in modern arctic marine ecosystems.

The role of fire in the management of degraded areas remains strongly debated. Here we experimentally compare removal and infestation of popcorn kernels (Zea mays L. – Poaceae) and açaí fruits (Euterpe oleracea Mart. – Arecaceae) in one burned and two unburned savanna habitats in the eastern Brazilian Amazon. In each habitat, a total of ten experimental units (five per seed type) were installed, each with three treatments: (1) open access, (2) vertebrate access, and (3) invertebrate access. Generalized linear models showed significant differences in both seed removal (P < 0.0001) and infestation (P < 0.0001) among seed type, habitats and access treatments. Burned savanna had the highest overall seed infestation rate (24.3%) and invertebrate access increased açaí seed infestation levels to 100% in the burned savanna. Increased levels of invertebrate seed infestation in burned savanna suggest that preparation burning may be of limited use for the management and restoration of such habitats in tropical regions.

The hypothesis that tetrapods evolved from elpistostegids during the Frasnian, in a predominantly aquatic context, has been challenged by the discovery of Middle Devonian tetrapod trackways predating the earliest body fossils of both elpistostegids and tetrapods. Here I present a new hypothesis based on an overview of the trace fossil and body fossil evidence. The trace fossils demonstrate that tetrapods were capable of performing subaerial lateral sequence walks before the end of the Middle Devonian. The derived morphological characters of elpistostegids and Devonian tetrapods are related to substrate locomotion, weight support and aerial vision, and thus to terrestrial competence, but the retention of lateral-line canals, gills and fin rays shows that they remained closely tied to the water. Elpistostegids and tetrapods both evolved no later than the beginning of the Middle Devonian. The earliest tetrapod records come from inland river basins, sabkha plains and ephemeral coastal lakes that preserve few, if any, body fossils; contemporary elpistostegids occur in deltas and the lower reaches of permanent rivers where body fossils are preserved. During the Frasnian, elpistostegids disappear and these riverine-deltaic environments are colonised by tetrapods. This replacement has, in the past, been misinterpreted as the origin of tetrapods.

Prothymosin alpha (PTMA) is a highly acidic, intrinsically disordered protein that was first extracted from rat thymus and characterized as an immunogenic factor but soon detected in a variety of mammalian tissues. The presence of a nuclear localization signal and the adoption of a peculiar random-coil conformation are among the reasons behind its interaction with several molecular partners, hence at this time PTMA is known to be a very conserved and widely expressed molecule, involved in numerous and diverse biological processes. Only few studies have tried to weigh its possible involvement in reproduction, specifically in male gametogenesis: first reports have suggested that PTMA might be associated with the proliferative and early-meiotic phases of mammal spermatogenesis. Some years later, a comparative project on vertebrate spermatogenesis reported the isolation, for the first time, of prothymosin in a non-mammalian species, the amphibian Pelophylax esculentus. PTMA transcript and protein are localized in the germinal compartment, from spermatocytes to spermatozoa. A congruent pattern has been highlighted in studies on the fish Torpedo marmorata and Danio rerio, and in the mammal Rattus norvegicus, in which the expression of PTMA has been found in meiotic and post-meiotic germ cells inside testicular cysts and tubules. Moreover, its presence has been confirmed in rat and human spermatozoa (associated with the acrosome); its retention in the apical region of the head after the acrosome reaction revealed a striking conservation of the pattern during phylogenesis and suggested a possible role for the protein in gametogenesis and in fertilization.

Prey seek to minimize predation risk by moving across the landscape in search of safer areas. Yet, these movements are associated with risks that depend on the intrinsic attributes of the species involved. We evaluated the effect of presence of an apex predator (Puma concolor) on the composition of a community of medium and large-bodied terrestrial mammal species in 23 forest fragments in the State of São Paulo, Brazil, based on overnight footprint surveys over 2 y. We tested if (1) presence of the puma decreases species richness (prey and mesopredator), (2) landscape features interact with puma effects, altering the composition and richness of prey, (3) darker nights strengthen the predation risk effects of puma and (4) this effect can vary among prey species. The puma reduced the richness of prey species by ~45% and presence of mesopredator by 11%. Larger forest fragments and darker nights strengthened the effects of puma on the mammal community. Most prey species showed negative associations with the apex predator, while others were unaffected or showed a positive association. These results add new knowledge about the effects of predation risk and of the landscape characteristics on the composition of the mammal community and the behaviour of different species. Furthermore, our results indicate that medium and large mammals live in a landscape of fear in Neotropical forest remnants.

Late Eocene deposits of the Samlat Formation, south of Ad-Dakhla city, southwestern Morocco, have yielded a mixed marine and terrestrial vertebrate fauna. Abundant and diversified chondrichthyans and archaeocete whales have been found, as well as the remains of sirenians and proboscideans. Here we describe the rest of this fossil assemblage which includes actinopterygians, turtles, palaeophiid snakes, crocodiles and pelagornithid seabirds. Actinopterygians are represented by at least two large-sized taxa, a scombroid probably close to the extant Acanthocybium or to the Eocene Aramichthys, and a siluriform related to the Ariidae. Turtles include at least four species represented by shell fragments. This mixed coastal and continental turtle fauna includes one littoral species of Podocnemididae, one or two deep-sea species of Dermochelyidae and one deep-sea species of Cheloniidae. Another turtle species is assigned to the terrestrial Testudinidae. Fragmentary crocodilian remains indicate the presence of undetermined eusuchians tentatively referred to Gavialidae and/or to Crocodylidae. Snake vertebrae are tentatively attributed to the genus Pterosphenus (Palaeophiidae) pending the discovery of new material. Avian remains belong to a large pseudo-toothed bird (Pelagornithidae). Pseudo-tooth morphology resembles that of the late Oligocene – Neogene genus Pelagornis. Additional bird remains are needed for a more precise taxonomic assignment. The fossil assemblage and palaeoenvironment of the upper Eocene deposits of the Samlat Formation appear closely related to those of the upper Eocene – lower Oligocene deposits of the Fayum (Egypt). The initial overview of this fauna provides an important contribution to the study of vertebrate evolution in North Africa near the Eocene–Oligocene transition.

Significant new material of Late Devonian Gogo Formation fish fossils is still surfacing. Collecting in the past decade has uncovered the first Gogo shark fossils (Gogoselachus plus another new undescribed taxon), the first acanthodian (Halmacanthodes ahlbergi), the first coelacanth, as well as the first placoderm embryos. Recent studies have elucidated the nature of placoderm claspers, pelvic girdles, synarcuals and embryos, the structure of their teeth, a description of well-preserved muscles in placoderms, and how muscles attach to bones. Molecular biomarkers have also been identified in Gogo fossils. There are now five basal ray-fin fishes in the fauna, including one undescribed new taxon. The lungfish fauna from Gogo is the most diverse known for any Devonian site, with 10 genera and 12 species. The dermal skeleton and endocast of the dipterid Rhinodipterus kimberleyensis have been described in detail from CT scans; and the ontogenetic stages of neurocranium formation in Griphognathus. New specimens of the tetrapodomorph fish Gogonasus andrewsae have shed further light on its endocranium, pectoral girdle and fin. Through their exceptional preservation of both hard and varied kinds of soft tissues, the Gogo fishes remain crucial for resolving key debates on the diversification, physiology, biomechanics and phylogenetic relationships of early gnathostomes.

Speleothem carbon and oxygen isotopic records from Onondaga Cave, south-central Missouri, and Beckham Creek Cave, north-central Arkansas, are compared with the Cupola Pond and Oldfield Swamp pollen series from southeastern Missouri and the Rodgers Shelter and Modoc Shelter vertebrate biostratigraphic sequences from central Missouri and southwestern Illinois. Similar, and roughly contemporaneous, shifts between deciduous forest and steppe indicators throughout the Holocene are revealed in each database. These independent proxies record steppe conditions between approximately 9000 and 1500 cal yr B.P. A shift toward lighter speleothem carbon may reflect a change from warm and dry to cool and dry conditions between 4500 and 3000 yr B.P. The sensitive response of speleothem δ13C to changes in vegetation emphasizes their importance as paleoclimate records in an area containing few other millenial-scale climate proxies.

Red Hills Road Cave, Jamaica is a remnant of a karstic feature quarried away during road building. It is the most important site for Late Pleistocene terrestrial palaeontology on the island. The site is c. 30 ka old. Many taxa were washed in during hurricanes and tropical storms, either as dead carcasses or live organisms that drowned as the cave filled with water. The invertebrate fauna includes snails and arthropods; none are obligate cave dwellers. The 62 species of land snails are the most diverse of any Jamaican cave; operculate taxa may be preserved with the operculum in situ. Arthropods include the only fossil millipedes, isopods and insects (fly puparia, beetle elytra) in the Jamaican fossil record, in addition to land crabs. Millipedes and isopods are well preserved because of a diagenetically early coating of calcite cement. The exoskeletons of these groups contain a small, but significant, calcite component not found in insects, spiders and scorpions. The vertebrate fauna remains understudied, but include: a rodent and three species of bat; a flightless ibis and various other birds; and reptile and amphibian remains. In contrast to the arthropods, the vertebrates are invariably disarticulated apart from rare crania, jawbones retaining teeth and bones that are fused in life. A dead millipede could be coated in calcite when floating in the cave immediately after death; a dead vertebrate carcass would have to rot to expose its bones after the cave dried out and would, most likely, disarticulate before or during the next inundation.

Host-parasite checklists are essential resources in ecological parasitology, and are regularly used as sources of data in comparative studies of parasite species richness across host species, or of host specificity among parasite species. However, checklists are only useful datasets if they are relatively complete, that is, close to capturing all host–parasite associations occurring in a particular region. Here, we use three approaches to assess the completeness of 25 checklists of metazoan parasites in vertebrate hosts from various geographic regions. First, treating checklists as interaction networks between a set of parasite species and a set of host species, we identify networks with a greater connectance (proportion of realized host–parasite associations) than expected for their size. Second, assuming that the cumulative rise over time in the number of known host–parasite associations in a region tends toward an asymptote as their discovery progresses, we attempt to extrapolate the estimated total number of existing associations. Third, we test for a positive correlation between the number of published reports mentioning an association and the time since its first record, which is expected because observing and reporting host–parasite associations are frequency-dependent processes. Overall, no checklist fared well in all three tests, and only three of 25 passed two of the tests. These results suggest that most checklists, despite being useful syntheses of regional host–parasite associations, cannot be used as reliable sources of data for comparative analyses.

A new genus and species of euphaneropid, Ciderius cooperi, is recorded from the Lower Silurian Fish Bed Formation of the Midland Valley of Scotland on the basis of articulated material. Euphaneropids constitute an enigmatic group which is known from Devonian deposits in Scotland and Canada. The new find adds to our understanding of this group, in particular with regard to the morphology of some common anatomical elements. The paired head stains are here shown to contain clefts which can be interpreted as optic fissures, indicating that these are the remains of eyes. The anterior head stain is reconstructed and demonstrated to be a barrel-shaped object of an uncertain nature. Paired mineralisations situated in the posterior part of the cranial region appear to represent remains of the parachordals, while fossilised blood vessels might be preserved in the form of black lines which mark a greatly elongated branchial region, similar to euphaneropids. Serially repetitive rows of short horizontal stripes on the posterior half of the body are unique for the new taxo, but their interpretation is problematic.

Convergence in the use of resources may occur between distantly related organisms. A major ecological resource in which members of various taxa may be interested is a cavity for nesting. A variety of social hymenopterans and vertebrates may nest within tree cavities in tropical ecosystems. We used 241 nest-boxes placed in seven Kenyan localities to investigate the use of nesting cavities by members of distant taxa and discuss whether interaction between them is a potential factor shaping cavity-nester communities in tropical regions. The nest-boxes were occupied by social insects (ants, bees and wasps) (30.1% of nest-boxes in April–May and 33.1% in September–October) and vertebrates (birds and mammals) (20% and 7.7%, respectively). Hymenopterans were more abundant in forest boxes (36.2% of nest-boxes occupied in April–May and 37% in September–October), whereas savannas had lower figures (21.7% and 31.3%, respectively). Among vertebrates, most occupants of nest-boxes in savanna were birds (17.8% of nest-boxes occupied vs. 8% in mammals), while mammals predominated in forests (4.9% of the nest-boxes occupied vs. 0.3% in birds). Spatial and temporal patterns of occupation highlight the potential that interaction between distant taxa may have on the access to nesting cavities. More nest-boxes remained unoccupied in forested areas than in savanna areas suggesting that a shorter supply of nesting sites in the savanna may be a source of competition. The simultaneous occupation of a nest-box by two different taxa was exceptional, also supporting the hypothesized inter-taxon competition.