The hypersaline Lake Urmia, located in Iran, has undergone a significant reduction in size and is currently facing the risk of desiccation. The decrease in water levels, coupled with elevated salinity levels, has initiated ecological degradation, leading to a substantial decline in the region’s waterbird population. This study employs breakpoint analysis to determine the year when the drought event affecting the lake commenced. Additionally, canonical correspondence analysis (CCA) is utilised to elucidate the interaction between environmental parameters and the waterbird assemblages in Lake Urmia over the period 1970–2018. Our investigation identifies the year 2000 as the initiation of the water crisis in Lake Urmia, synchronously coinciding with the decline in the waterbird populations. This finding highlights a significant connection between the majority of waterbird species and the axes of CCA, intricately linked with water availability within Lake Urmia. This revelation underscores the pivotal role of fluctuations in water levels in shaping the dynamics of the lake’s waterbird assemblages. Furthermore, our observations emphasise the importance of even minor improvements in hydrological conditions of the lake, resulting in substantial positive impacts on waterbird populations.

The current emphasis of schistosomiasis control is placed on preventive chemotherapy using praziquantel. However, reinfection may occur rapidly in the absence of complementary interventions. Recent studies from Senegal suggest that predatory prawns might feed on intermediate host snails and thus impact on schistosomiasis transmission. We designed a study with four repeated cross-sectional surveys pertaining to prawns and snails, coupled with a single cross-sectional parasitological survey among humans. We assessed for potential associations between the presence/density of prawns and snails and correlation with Schistosoma infection in a composite sample of school-aged children and adults. The study was carried out between October 2015 and December 2016 in 24 villages located near the Agnéby and Mé coastal river systems in south-eastern Côte d'Ivoire. At each site, snails and prawns were collected, and in each village, 150 individuals were subjected to stool and urine examination for the diagnosis of Schistosoma mansoni and S. haematobium. We found peaks of relative abundance of intermediate host snails in the villages of the Agnéby River system, while predatory prawns were predominantly recorded in the Mé River system. A negative association was observed between intermediate host snail densities and riverine prawns; however, no pattern was found between this trend in the predator–prey relationship and the prevalence of human schistosomiasis.

Weed species respond to the cumulative effect of multiple practices employed within weed management systems. However, this response is rarely studied at the system level, and the relationships between weed communities and management systems in crops are not well understood. We used multivariate analyses to assess relationships among tomato management systems and weed species identified through on-farm sampling of 59 fields. Giant foxtail, common lambsquarters, prickly sida, and carpetweed were common in all systems. Eastern black nightshade was common in the conventional processing and mixed fresh-market systems but largely absent from the organic system. Barnyardgrass and goosegrass were common in the organic fresh-market system but not in the other systems. Canonical correspondence analysis identified distinct associations between specific species and the management systems. Common purslane was strongly associated with the rain-fed, mixed fresh-market system, and barnyardgrass, goosegrass, yellow nutsedge, and green foxtail were associated with the irrigated, organic fresh-market system. Indicator species analysis identified five species that were significant indicators of the organic, fresh-market system and one species that was a significant indicator of the rain-fed, mixed fresh-market system. Weed populations persist or increase when a set of species-specific environmental conditions are met. The association of weed species in this study with particular systems supports the hypothesis that weed communities are strongly affected by management systems.

We studied the vegetation and soil properties of a dry forest that had once been disturbed in central Myanmar using 30 quadrats (20 × 20 m) established in 2012. For 30 species, the overall density was 706 individuals ha−1, and the basal area was 2.92 m2 ha−1. The forest was a mosaic of six community types, each of which was dominated by a single species. Dominant species that were capable of resprouting accounted for 47–78% of the total density and 56–83% of the basal area of the communities. We related seven soil properties to the vegetation patterns using canonical correspondence analysis (CCA). The CCA results highlighted remarkable associations of species such as Acacia catechu, Dalbergia paniculata, Terminalia oliveri and Millettia multiflora with soil texture. Acacia inopinata was associated with a high soil pH (i.e. 9–10), and Terminalia tomentosa was associated with soil hardness. Our results indicate that secondary succession of a dry forest is not initially led by pioneer species, but instead, by superior competitors capable of resprouting, and that species distributions are primarily determined by the filtering effects of edaphic conditions. We believe that the dry-forest species retain their soil–species relationships despite heavy disturbances.

Tigridiopalma magnifica, a perennial herb and the only species in the genus Tigridiopalma (Family Melastomataceae) is rare and endemic to China where it is categorized as Critically Endangered on the national Red List. Twelve locations with populations of T. magnifica have been identified (1 extinct, 11 extant). T. magnifica only grows in the surface soil on stone walls or rocks under the canopy of secondary forests and plantations and has no specific associated plant species. Canopy closure, soil water content and the distance to the closest stream are the main factors influencing the distribution of T. magnifica. We reintroduced T. magnifica plantlets produced by tissue culture into three locations: one within the species' original range, and 11.5 and 400 km from the species' original range. After 11 months survival rate was 40–58% but survival was higher and plantlet crowns were larger at the location within the species' original range than at the other two sites. The combination of advanced propagation techniques and ecological restoration could facilitate reintroduction and conservation of T. magnifica and other rare and threatened plants. This example of the successful reintroduction of a rare, threatened herb has implications for human-assisted migration and colonization of rare plant species under future climate change scenarios.

This study investigated the influence of soil factors on the structure, richness and distribution of woody Cerrado species within the National Forest of Paraopeba, Minas Gerais State, Brazil. Individuals with basal stem circumference ≥ 10 cm were sampled in five plots of 20 × 100 m. The study was conducted in five environments with different physiognomies and types of soils. A total of 132 species were recorded. The species with the greatest importance values varied between different areas, as did structure. Canonical correspondence analysis ordination showed three different groups closely related to soil fertility and Al levels. These relations were also confirmed by Pearson’s correlation where richness was positively related to pH, K, Ca, Mg and P and negatively to Al. The basal area was positively correlated with levels of P, Mg, Ca and T (base saturation) and negatively with Al, also using Pearson’s correlation. Likewise, density was positively correlated with Mg and negatively with Al. The analysis shows that soil fertility and the concentration of Al are two of the most important factors responsible for structural and floristic variation and for differentiating dystrophic and mesotrophic Cerradão.

The aim of this work was to study the structure of the parasite communities of Digeneans of 2 families of Teleost fishes (Sparidae and Labridae) of the Mediterranean sea. We tried to quantify the importance of both the microhabitat requirements of the parasite species and the effect of host biological factors on the parasite communities. We applied, for the first time in parasite community studies, the Canonical Correspondence Analysis (CCA) to analyse (i) the spatial distribution of parasite species within the digestive tract of the hosts; (ii) the host's biological factors (such as diet, host length, gregariousness and abundance) that may influence this spatial distribution of parasite species. Our results showed that potential microhabitats were vacant in the 2 host families studied revealing a lack of niche saturation because either there was little inter- and/or intraspecific competition or there were enough available space and resources within the host. Our results also indicated that the position of the parasite in the digestive tract is much more important than host biological factors for the structure of parasite community. Finally, we highlight the potential use of the CCA method for controlling for phylogenetic constraints in multi-species analyses.

Soil-vegetation relationships were examined in a tabonuco forest community in eastern Puerto Rico using canonical correspondence analysis. Ca and pH were strongly correlated with the first ordination axis (r = 0.84 and 0.76, respectively), while Mg and Na were correlated with the second axis (r = 0.65 and 0.64, respectively); other soil variables were not significantly related to the first two axes. Four previously identified soil series corresponded well with the ordination, and statistically significant differences in soil variables were found among the soil series. Dominant canopy tree species Dacryodes excelsa and Manilkara bidentata were negatively associated with the first ordination axis and positively associated with dry soils having low concentrations of Ca and Mg and low pH. The palm Presloea montana was positively associated with the first axis and with wet soils having high concentrations of Ca and Mg and higher pH values. Another canopy species Sloanea bertenana was associated with the second ordination axis and with lower slope positions having higher concentrations of Mg.

The relationships between soil properties, topography and tree species distribution were analysed in a tropical riverine forest at the margins of the Rio Grande, in Bom Sucesso, state of Minas Gerais, south-eastern Brazil. The forest was sampled by three 0.18 ha plots, with each plot made up of eight contiguous 15 m X 15 m quadrats, four of which were placed at the river margin and the remaining four in the forest interior. A canonical correspondence analysis indicated that the species' density distribution was significantly correlated with some soil chemical characteristics and topographical features. The soils of the three sample plots showed statistically significant differences for the levels of Ca, Mg, K and pH, with the fertility (expressed by the cation exchange capacity) increasing from Plot I to Plot III. These variations were mainly explained by the first canonical axis while the second was strongly correlated with topographical variables, separating the quadrats into two groups: those of the higher and steeper sites from those of the lower sites. The only soil property that was significantly different in lower and upper sites was the concentration of phosphorus. No significant difference in tree species distribution was found between river margin and interior quadrats, certainly because this forest sector lies on the outer side of a curve of the river where erosion is currently building high and steep river banks and forcing the forest to retreat. A tentative ecological classification of the 30 most abundant species according to their habitat preference in terms of soil fertility and topographical sites, and to their growth strategy in the forest dynamics, is presented. It is suggested that these factors play an important role in promoting the coexistence of tree species in this type of forest.

The study aimed to determine how the response of the epiphytic lichen vegetation to sulphur air pollution is affected by interaction with other factors (distance from pollution sources, habitat, altitude, initial eutrophication of the tree bark). It was based on a series of four successive recordings taken over a period of 18 years with increasing pollution levels and on the same set of 139 solitary trees. Relationships between habitat variables and lichen community composition are assessed using canonical correspondence analysis. The data set comprised 69 lichen species. Ordination of initial species composition on trees revealed two major gradients: eutrophication and acidity.

The species composition significantly changed with time, with a general decrease of the total number of lichen species per tree. In general, species sensitive to air pollution decreased, while tolerant species increased in number. Change over time differed depending on the position of the tree within the landscape (relative to one major source of pollution, the town of Tábor, whereas the distance to the other source, Sezimovo Ústí, was not significant) and on the initial species composition found on the tree. Trees under the effect of eutrophication changed their species composition less, indicating that the effect of eutrophication (mainly increased bark pH) may ameliorate the effects of air pollution; a local effect of eutrophication also seems to play an important role. Distance to pollution sources had only a small impact on the rate of change and perhaps other local conditions (sheltered or humid position, altitude) play a role in this interaction. There was a decrease of the overall heterogeneity of the data set over time. This means that the gradients in species composition attributable to these variables became less important over time. Therefore, one of the effects of air pollution is also a general homogenization of the lichen vegetation of the solitary trees.

The seasonal dynamics of Acartia tonsa and the invader Eurytemora americana were analysed in relation to the environmental variability occurring from April to November in the Bahía Blanca Estuary. Twice a month, the abundance of eggs, nauplii, copepodites and adults was examined and some environmental variables were recorded. Multivariate statistics (CCA) was applied to analyse the data of variables. Acartia tonsa eggs and nauplii diminished from April–May and they were almost absent between June and September, although a small larval peak could be detected from the end of July to October. All the stages of this species increased in number through spring. Eurytemora americana was registered as from June and only nauplii larvae were observed, with a peak increase during September. Copepodites and adults were observed as from July, increasing in number until peaking at the end of September. The number of all stages of this species decreased abruptly, the whole population disappearing from the plankton. The A. tonsa developmental stages were most positively correlated with temperature, photoperiod and other light variables whereas those of E. americana showed positive correlations with chlorophyll-a and salinity. The gradients of the main environmental factors likely give rise to a certain niche separation facilitating the coexistence of the two copepod populations within the period studied.

Seed banks play a crucial role in arid plant communities because they confer stability and long-term persistence. However, seed banks have high temporal and spatial variability, with dramatic changes in density and composition. The aim of this study was to test whether seasonal change affected seed bank community structure and spatial pattern. Moreover, we wanted to know if the effect driven by environmental factors on the seed bank was constant year round. We sampled the seed bank at 188 points along seven parallel transects through a gypsum system in central Spain. Soil samples were taken twice (September and April) in contiguous plots. In each plot we measured environmental parameters, including micro- and macroslope, vegetation band, shrub cover, lichen crust cover and landform. A nearly threefold decrease in seed bank density occurred between September (16,230 seeds m–2) and April (5960 seeds m–2). Seasonal changes in density varied widely among species; however, a seed bank was present for most species at both sampling dates. For several well-studied species (Lepidium subulatum and Helianthemum squamatum), seed losses were within the range of losses by emergence reported in the literature. In both seasons, seed bank composition was controlled mainly by community band and microslope. Sampling season had a significant, but minor effect on seed bank composition. Moreover, a high spatial correlation existed in terms of seed density and richness through the two studied seasons. These results show that the seed bank keeps a constant structure even under substantial variation in density.

The relationship between surface sediment diatom assemblages and measured limnological variables in 33 coastal Antarctic lakes was examined by constructing a diatom-water chemistry dataset. Canonical correspondence analysis revealed that salinity and silicate each explain significant amounts of variation in the distribution and abundance of the surface sediment diatom taxa. Salinity has the strongest influence, revealing its value for limnological inference models in this coastal Antarctic region.

The relative effects of the elevational gradient and of environmental discontinuities (ecotones) on the structure of a herpetofaunal assemblage in a tropical upland forest were contrasted by means of canonical correspondence analysis. Qualitative descriptors were used to define the elevational positions of the ecotones of interest, namely transitions in forest type and presence/absence of water bodies. The elevational gradient was coded in a form that accommodated different types of community response. Analyses were run for four subsets of the entire assemblage: (1) reptiles, (2) amphibians, (3) amphibians dependent on streams for reproduction, and (4) amphibians that do not use streams for reproduction. All subsets showed a significant relationship with the gradient, which suggested that most species respond to the physical continuum associated with the change in elevation. A response to ecotones was revealed for the amphibian subset only and associated with the presence or absence of watercourses. However, this response disappeared within subsets 3 and 4. A variation partitioning analysis was used to assess the individual and common contributions of gradient and ecotone descriptors to the elevational variation in the structure of subsets 1 and 2. The gradient descriptors explained more variation in the reptile subset than did ecotones, while the reverse was found in the amphibian subset. The dependence of most amphibians on aquatic breeding sites that were not available at all elevations reduced the relative importance of the gradient on the species distributions in subset 2 and accounted for the difference to the reptiles. In all, these findings add to the results of previous null model tests on the same four subsets, where competitive interactions were assigned a minor importance in limiting elevational distributions. The response patterns revealed by the present approach, with ecotones and gradient contrasted in a single analysis, emphasised the role of individual responses to the gradient according to the species' physiological tolerance limits.

A study of microhabitat use by fourteen abundant fish species was undertaken in the lower Ntem River Basin in Cameroon (Africa). Seventy-one microhabitats including pools, raceways and riffles were studied twice during the 1994 and 1995 dry season. Results obtained by Canonical Correspondence Analysis (CCA) showed a good niche separation along the ordination axes I (λ1 = 0.37) and II (λ2 = 0.20). Microhabitat selection by these species reflects response to several physical factors including width, depth, current velocity and substrate type. However, a substantial part of the variation in species segregation was explained by both instream (% leaves, woods and roots, and aquatic plants) and bankside (% mean canopy closure)cover. A striking pattern encountered during this study was the frequent size-related variation in habitat use displayed by many species. For example, smaller individuals of Brycinus longipinnis, Barbus camptacanthus, Distichodus notospilus, and D. hypostomatus, occurred more often in faster flowing waters than did their larger conspecifics. The association displayed by CCA was high (0.957 and 0.938, respectively for the first and second axis), and Monte Carlo test (99 permutations) revealed that these associations were significantly different from random (p = 0.01). The implications of these results for habitat management are discussed.