The spatial and seasonal variability of the microphytoplankton and ciliates communities in relation to the environmental factors were studied in the southern coastal area of Sfax. Results revealed a striking difference between seasons regarding pH, with strong acidification in autumn generated by industrial activity. Spatial distribution of pH in autumn impacted the microorganisms in different ways: acidic stations to the south showed significant correlations with Cyanobacteria, dinoflagellates and loricate ciliates whereas higher pH values in spring (pH > 8) were linked to diatoms richness. The high availability of inorganic phosphate is associated with the high release of phosphate due to residue from a phosphate treatment manufacture along the coast; consequently, N/P ratios were low (1.34–13.43) suggesting nitrogen limitation. Microphytoplankton abundance shifted from dinoflagellates dominance in autumn to dominance of diatoms during winter and of Euglenophyceae in summer. Loricate ciliates accounted for the largest proportion of the ciliates community while aloricate ciliates were relatively scarce during all seasons. Variability of ciliate community appeared not directly linked to environmental conditions, but significant positive relationships between abundance of loricate ciliates and microphytoplankton suggest that these ciliates may feed on microphytoplankton.

The objective of this study was to assess the distribution patterns of dinoflagellates and ciliates communities during planktonic bloom and post-bloom development periods, in relation to environmental parameters. Their distribution was studied during spring and summer 2012, in coastal waters of Algeria at six sampling stations (four sampling layers). Overall, 116 species were identified, including 98 dinoflagellates. The species richness of microzooplankton was higher in summer (81 species: 67 dinoflagellates, seven tintinnids and seven ciliates) than in spring (76 species: 72 dinoflagellates, three naked ciliates and one tintinnid). Significant difference in total abundances was observed between spring (median = 145 ind l−1) and summer (median = 90 ind l−1) but no significance (P > 0.05, Mann–Whitney test) in Shannon–Wiener (H′spring: 3.31 bits ind−1; H′summer: 3.70 bits ind−1) and evenness (Espring: 0.77; Esummer: 0.84) indices. The ciliate average abundance was higher in summer (11.3 ind l−1) than in spring (1.95 ind l−1), whereas dinoflagellate average abundance was lower in summer (127.92 ind l−1) than spring (190.19 ind l−1). Non-metric multidimensional scaling was used to identify different sample assemblages. It showed that temperature and salinity influenced the distribution pattern in the canonical correspondence analysis followed by chlorophyll a, silicate and nitrate concentrations. Our framework provides insight regarding trait trade off with implications for feedbacks to ecosystems, aiming to bridge the gap of plankton community ecology in Algeria. It elaborates a taxonomic list of dinoflagellates and ciliates in the marine pelagic ecosystem and performs their ecological characterization in their environment.

The structure of the microbial food web was studied in six estuary areas along the eastern Adriatic coast during March, July and October 2012. Limitation by phosphorus, not nitrogen, was a common feature for all studied estuaries. Heterotrophic bacteria and autotrophic picoplankton (APP) (particularly picoeukaryotes and Synechococcus) can reach notable abundances and biomasses, suggesting potential importance of the picoplankton community in P-limited estuarine environments. The main features of the microbial community structure in these environments included: (1) higher heterotrophic biomass in comparison to autotrophic biomass within the picoplankton community; (2) general domination of picoeukaryotes within the APP community, and increase of absolute and relative biomass of prokaryotic autotrophs (Prochlorococcus and Synechococcus) in the total APP in P-limited conditions; (3) domination of Synechococcus over Prochlorococcus biomass in all studied conditions, and common spatial distribution of these two groups of cyanobacteria, which was mostly determined by concentration of phosphorus; (4) relatively high contribution (about 50%) of LNA bacteria in the total bacterial abundance; and (5) relatively high contribution (about 33%) of heterotrophic pico-flagellates in the total flagellate abundance.

The planktonic microbial communities of three meltwater ponds, located on the McMurdo Ice Shelf, were investigated from the end of January 2008 to early April, during which almost the entire pond volumes froze. The ponds were comprised of an upper mixed layer overlying a salt-stabilized density gradient in which planktonic communities were primarily embedded. Plankton comprised all components of the “microbial loop”, though carnivorous protists were rare. As the ponds froze and light became increasingly limited, it was expected conditions would induce physiological changes altering the functional role of autotrophic and heterotrophic microplankton within the ponds. The results showed that microbial groups responded to the onset of winter by declining in abundance, though an exception was the appearance of filamentous cyanobacteria in the water column in March. As freezing progressed, autotrophs declined more rapidly than heterotrophs and grazing rates and abundances of mixotrophic and heterotrophic organisms increased. Grazing pressure on bacteria and picophytoplankton also increased, in part explaining their decline over time. The results indicate that stressors imposed during freezing select for increasing heterotrophy within the remaining microbial communities, although all components of the food web eventually decline as the final freeze approaches.

The testate amoeba, ciliate and rotifera communities living in interstitial waters in peatbog in eastern Poland were studied. Sampling was done on a monthly basis from April to November 2007–2008. Microbial communities were examined in a transect including three sites: (1) pine forest (site located 5 m from the lagg/forest contact zone), (2) lagg, (3) open peatbog (the centre of the peatbog). At each of the sites, interstitial water was sampled by means of piezometric wells placed to a depth of 1 m. The species richness and abundance of protozoa and rotifers significantly differed between the studied stations, with the lowest numbers in the pine forest and the highest in the lagg. These differences between macro-habitats may be due to differences in environmental conditions. The distribution of samples in ordination space led to conclude that studied habitats are distributed along the falling gradient of pH and rising gradient of total organic carbon, water table depth and nitrate nitrogen. Assemblages of all three groups showed a strong compositional gradient correlated with water-table depth, conductivity and total phosphorus. However, species composition of ciliates and rotifers was explained by nitrate nitrogen and/or phosphates concentrations. The results suggest that lagg zone of a raised bog can fulfil the function of an ecotone zone, distinguished by a significant increase in biodiversity, abundance and species specificity of micro-organisms. It can also be a place of very efficient matter and energy flow in a peat bog ecosystem.

Many reef coral diseases have been described affecting corals in the wild, several of which have been associated with causal agents based on experimental inoculation and testing of Koch's postulates. In the aquarium industry, many coral diseases and pathologies are known from the grey literature but as yet these have not been systematically described and the relationship to known diseases in the wild is difficult to determine. There is therefore scope to aid the maintenance and husbandry of corals in aquaria by informing the field of the scientifically described wild diseases, if these can be reliably related. Conversely, since the main driver to identifying coral diseases in aquaria is to select an effective treatment, the lessons learnt by aquarists on which treatments work with particular syndromes provides invaluable evidence for determining the causal agents. Such treatments are not commonly sought by scientists working in the natural environment due the cost and potential environmental impacts of the treatments. Here we review both wild and aquarium diseases and attempt to relate the two. Many important aquarium diseases could not be reconciled to those in the wild. In one case, however, namely that of the ciliate Helicostoma sp. as a causal agent of brown jelly syndrome in aquarium corals, there may be similarities with pathogenic agents of the wild coral diseases, such as white syndrome and brown band syndrome. We propose that Helicostoma is actually a misnomer, but improved understanding of this pathogen and others could benefit both fields. Improved practices in aquarium maintenance and husbandry would also benefit natural environments by reducing the scale of wild harvest and improving the potential for coral culture, both for the aquarium industry and for rehabilitation programmes.

We studied the distribution of phytoplankton and ciliate communities in relation to environmental factors at 6 stations sampled between 28 and 31 July 2006 during the summer water stratification in the Gulf of Hammamet (Tunisia, eastern Mediterranean Sea). A strong thermocline was established at 30 m, and, on average, the N/P ratio was lower than the Redfield ratio (16), suggesting a potential N limitation. The inshore location was numerically dominated by dinoflagellates (55%) represented essentially by members of the genera Protoperidinium, Gymnodinium, and cryptic Scrippsiella trochoidea and on the offshore by diatoms (68%). The phytoplankton assemblage was largely dominated by the diatoms Thalassionema nitzshioides and Rhizosolenia styliformis, while the ciliate community was numerically dominated by small taxa such as Lohmanniella oviformis (6 × 102 cells l−1) and Uronema marinum (5.50 × 102 cells l−1). The total phytoplankton abundance increased from the coastal area (5.26 × 102 ± 4.48 × 102) to the open sea (10.33 ×102 ± 28.06 × 102) and decreased from the surface to the bottom, inversely to the ciliate abundance. Total phytoplankton and abundances showed similar patterns. Total ciliate biomass decreased from the inshore (0.25 ± 0.58) to the offshore (0.06 ± 0.10) areas but increased from the surface to the bottom. The diversity index of both phytoplankton and ciliate communities showed a decrease with a coastal–open sea gradient. The relationships between phytoplankton and ciliates suggest planktonic micro-heterotrophs were implicated in the channelling of matter and energy through the microbial loop in the Gulf of Hammamet.

Grazing experiments targeting the determination of in situ grazing rates are standard. In two separate experiments the effect of the frequently used siphon filling technique on the abundance of microzooplankton during the set-up of grazing experiments was investigated and compared to results from an alternative filling method. Hereby, water containing natural communities from Helgoland Roads, Germany (54°11.3′N 7°54.0′E), was transferred into incubation bottles using a funnel system (funnel-transfer technique (FTT)). The impact of pre-screening with a 200 µm net for excluding larger mesozooplankton grazers from the incubations was evaluated. Results show that the ciliate community was strongly affected by siphoning and pre-screening, leading to significant differences in abundance and Margalef diversity. The most affected ciliates were Lohmanniella oviformis and Myrionecta rubra, both important species in the North Sea. Dinoflagellates did not show any significant response to either siphoning or pre-screening with the exception of one athecate species. Such artificial bias in ciliate assemblages is very problematic for biodiversity consideration and grazing investigations. Simply changing the method of filling during the experimental set-up can ensure the measurement of accurate grazing rates of field abundances of microzooplankton. We thus recommend using conservative filling approaches like the FTT in experiments, especially when sensitive species are present, in order to avoid shifts in the overall microzooplankton community. Furthermore, we recommend introducing a control to evaluate the degree of changes in the target community due to the experimental set-up.

The summer spatial distribution of the phytoplankton community in the Gulf of Gabès (Tunisia, eastern Mediterranean Sea), together with environmental factors, were studied during a preliminary study conducted in July 2005 aboard the RV ‘Hannibal’. The phytoplankton community, which showed a decrease in concentration along a coastal–open sea gradient, was dominated by Dictyochophyceae (41%) followed by Dinophyceae (25%), Bacillariophyceae (16%), Cyanobacteriae (17%) and Euglenophyceae (1%). The phytoplankton found along the coast was dominated by opportunistic species (e.g. Dictyocha fibula) associated with high nutrient availability. In the open sea, phytoplankton development seemed influenced by Atlantic hydrodynamics. In addition, the Gulf of Gabès is characterized by an oligotrophic status with a summer stratification that impacted on species composition especially in off-shore areas. The coupling of phytoplankton dynamics to nutrients, ciliates and copepods showed the potential role played by ciliates not only as predators of phytoplankton but also as prey for filter-feeding copepods accounting for the increased fisheries productivity of the Gulf of Gabès.

Renal infections by parasitic ciliates were studied in adult snails of Helix aspersa aspersa and Helix aspersa maxima collected from 2 mixed rearing system-based heliciculture farms located in Galicia (NW Spain). The occurrence of ciliates was also examined in slugs (Deroceras reticulatum) invading the greenhouses where first growing and fattening of snails is carried out. Histological examinations revealed a severe destruction of the renal epithelium in heavily infected hosts. Three ciliate isolates, one from each host species, were obtained and grown in axenic cultures. Cultured and parasitic ciliates were characterized morphologically and morphometrically. In addition, the encystment behaviour, the occurrence of autogamy, and the sequences of the mitochondrial cytochrome-c oxidase subunit 1 (cox1) and the small subunit ribosomal RNA (SSU rRNA) genes were also studied in the 3 isolates. A polymorphic life cycle involving resting and reproductive cysts, together with the morphological and morphometrical characteristics and the confirmation that autogamy occurs within cysts, demonstrate that our ciliates belong to the species Tetrahymena rostrata (Kahl, 1926) Corliss, 1952. The 3 isolates formed a well-supported clade using both genetic markers, and were clearly separate from the strain ATCC® 30770™, which has been identified as Tetrahymena rostrata. We argue that our Spanish isolates should be regarded as Tetrahymena rostrata, and that the ATCC isolate should be regarded as a misidentification as neither cytological nor cytogenetical support for its identity has been presented.

The distribution of abundance and biomass of prokaryotes, flagellates, ciliates and phytoplankton, were studied in five ponds of increasing salinity in the Sfax solar saltern (Tunisia) coupled with environmental factors. The results showed that abundance of eukaryotic microorganisms decreased with increasing salinity of the ponds whereas prokaryotes (heterotrophic bacteria and Archaea) were abundant in the hyper-saline ponds. Phototrophic picoplankton was found in a large range of salinity values (70 and 200‰). Phototrophic non-flagellated nanoplankton which dominated in the first sampled pond was substituted by phototrophic flagellated nanoplankton in the other ponds. Heterotrophic nanoplankton dominated in the crystallizer pond but its quantitative importance declined in the less saline ponds. Diatoms and dinoflagellates were the major contributors to phytoplankton abundance in the first ponds (>90% of total abundance). Ciliated protozoa were found in all the ponds except in the crystallizer in which prokaryotes proliferated. Oligotrichida and Heterotrichida were the most abundant ciliate groups. Overall, species richness decreased with salinity gradient. We propose a simplified diagram of the Sfax saltern's food web showing the dominant role of the microbial loop along the salinity gradient.

The Antarctic psychrophilic ciliate Euplotes focardii manifests a dramatic reduction in the activation of its hsp70 gene in response to a heat-shock, while oxidative and chemical stresses activate the transcription of this gene to appreciable extents. To investigate the genetic causes of this eccentric behaviour of E. focardii in the hsp70 gene transcription activation, we carried out a comparative structural analysis of this gene between E. focardii and another Antarctic Euplotes, E. nobilii, which manifests a psychrotrophic behaviour and an inducible thermal response. No substantial difference was detected in the organization of the hsp70 5' promoter region, both species bearing canonical regulatory cis-acting elements deputed to bind transcriptional trans-activating factors. Adenine-rich elements favouring mRNA degradation were instead detected in the hsp70 3' regulatory region of E. nobilii, but not in that of E. focardii. These observations lend further support to the hypothesis that the causes of the Euplotes focardii unresponsiveness to thermal stress resides in some structural, or functional modifications of transcriptional trans-activating factors.

Bromeliads are common as epiphytes in warm neotropical forests (Benzing 1990). Species native to relatively wet forests impound water in a central cup and/or in seperate leaf axils. These tanks receive enough leaf litter and rainwater to support aquatic life (Maguire 1971). In these complex microcosms many groups of freshwater organisms ranging from algae, fungi, bacteria and protozoa through insects to frogs are represented and constitute considerable animal populations (Frank 1983, Laessle 1961, Maguire 1971, Picado 1913, Richardson 1999). Nutrients originating from the decomposition of litter and animal waste are absorbed by specialized trichomes on the bases of the leaves which form the tanks (Benzing 1980, 1990).

Les Ciliés sont une composante importante du nano- et du micro-plancton des eaux stagnantes, mais peu d'attention a été portésur la part qu'ils pouvaient prendre dans les eaux courantes. Nous avons réalisé, de juin à octobre 1996, une étude bimensuelledes Ciliés du potamoplancton de la Loire moyenne, comparativement à l'examen des algues et des Rotifères qui abondent certainesannées en étiage, dans cette partie du fleuve. Deux sites, situés en ordre 8, respectivement à 550 km et à 640 km de la sourcedu fleuve, ont été échantillonnées.Les augmentations de la teneur en oxygène dissous, des matières en suspension, de la DBO5 et des teneurs en chlorophylle a,associées à la baisse de la teneur en éléments nutritifs, sont typiques des eaux eutrophes. La communauté algale, dominée par lesChlorophytes et les Bacillariophytes, atteint son maximum de développement fin juillet (avec respectivement 40.106 cell.l-1 et70.106 cell.l-1 du site amont au site aval). Les Ciliés, dominés par les Oligotriches et les Péritriches ont leur maximum de densitédeux semaines plus tard (respectivement 6.200 cell.l-1 et 14.340 cell.l-1). La densité maximale des Rotifères dominés par lesBrachionidés et les Trichocercidés, est observée simultanément à celle des Ciliés (respectivement 3610 ind.l-1 et 1780 ind.l-1) ;contrairement aux années antérieures, elle est plus faible en aval, ces organismes ayant réagi aux perturbations induites par lestravaux réalisés sur le site aval.Comme dans les milieux stagnants, dans cette partie eutrophe de fleuve, la matière organique disponible favorise le développementde Ciliés et de Rotifères consommateurs d'algues et de bactéries. Le rapport hétérotrophes / autotrophes, exprimé en carbone,passe de 0,34 en amont à 0,17 en aval ; il illustre le rôle régulateur des Rotifères filtreurs, dont la régression en aval attribuéeaux travaux de terrassement et amplifiée par la prédation invertébrée, a favorisé le développement des Chlorophycées. Labiomasse en carbone des Rotifères est supérieure à celle des Ciliés, mais, en fin d'été, ces derniers jouent un rôle important dansles transferts d'énergie au sein de cet écosystème fluvial.