The floristic composition of the understory plays a fundamental role in the long-term conservation of the diversity, structure, and function of mountain cloud forests in the Andes. We evaluated the relationship between the understory tree floristic composition of four types of predefined cloud forests and the canopy structure, the light transmitted to the understory, and the effect of topography. Through multivariate analysis, we found an environmental gradient correlated with light penetration into the understory and a gradient associated with the slope and, to a lesser extent, with the elevation. Then, we identified floristically well-differentiated ecological groups in response to environmental conditions; however, the groups only partially coincided with the understory composition of the predefined forests. We found environmental response species groups such as Roupala obovata and Beilschmiedia sulcata that are indicator species of sites with lower light penetration into the understory but with steeper slopes and higher elevation. In comparison, Clusia multiflora and Zanthoxylum quinduense to be the main indicator species from sites with greater light penetration into the understory and lower slope and elevation. These findings support appropriate species selection when implementing restoration strategies in forest landscape restoration plans.

Trait differences between invasive plants and the plants in their recipient communities moderate the impact of invaders on community composition. Callery pear (Pyrus calleryana Decne.) is a fast-growing, stress-tolerant tree native to China that has been widely planted for its ornamental value. In recent decades, P. calleryana has naturalized throughout the eastern United States, where it spreads rapidly and achieves high abundance in early-successional environments. Here we compare the impacts of low-density, establishment-phase P. calleryana to those of functionally similar native trees on the understory community diversity and total cover of three early-successional meadows in Indiana’s Eastern Corn Belt Plains. In contrast to our prediction that P. calleryana would have greater negative effects on the total abundance and diversity of the understory plant community compared with native tuliptree (Liriodendron tulipifera L.), American sycamore (Platanus occidentalis L.), or non-tree control plots, we found that these low-density populations of P. calleryana had no significant impact on total cover, species richness, or diversity indices for the understory community compared with the native trees and non-tree control plots. Likewise, the studied populations of P. calleryana had no significant impact on the native, introduced, woody, or native tree subsets of the understory community. These results indicate that in young, low-density populations situated in early-successional meadows, the trait differences between P. calleryana and functionally similar native trees are not of a great enough magnitude to produce changes in community composition. Going forward, complementary research on the impacts of P. calleryana on community composition and ecosystem processes in areas with long-established, dense invasions or invasions in more sensitive ecosystems would allow us to more fully understand how this widespread invader disrupts its host ecosystems.

Woody plant resprouting has received considerable attention in the last two decades as human disturbances continue to encroach on terrestrial ecosystems globally. We examined the regeneration mechanisms of a Caatinga dry forest in the context of slash-and-burn agriculture and resprouting ability of the local flora. We excavated two old fields (from 32) experiencing early forest regeneration dominated by the tree Pityrocarpa moniliformis (Fabaceae) to map clonal propagation and, in parallel, submitted 260 seedlings from 13 woody plant species to experimental clipping. What seemed to be ‘seedlings’ popping up around P. moniliformis stumps and remaining adults actually were condensed sets of root suckers connected via complex networks of long, ramified shallow horizontal roots without taproots. We mapped respectively 39 and 783 connected root suckers, which summed 96 m and 910 m in root length. Regarding the seedlings, 33% resprouted across nine species with resprouting rates varying between 5–100%. Seedling height before clipping positively influenced resprouting vigour. Our preliminary results suggest that the Caatinga dry forest supports a relatively high proportion of resprouting species, some of them able to clonally propagate and playing an ecosystem-level role by responding to early forest regeneration and high abundance/biomass across both regenerating and old-growth forests.

The results from analyses of botanical remains (pollen, wood, charcoal, seeds) from several archaeological features excavated in Kluizen (northern Belgium) are presented. The region was largely uninhabited until the Iron Age and Roman period when a rural settlement was established, resulting in small-scale woodland clearance. The site was subsequently abandoned from c. AD 270 till the High Middle Ages. The results of the archaeological and archaeobotanical analyses provide information on changes in land use and resulting dynamics of woodland cover and composition between c.600 BC and AD 1200, with a spatial and temporal resolution unrivalled in northern Belgium. Especially the long period of woodland regeneration following abandonment of the site around AD 270, covering the Late Roman and Early Medieval period, could be reconstructed in detail. Abandoned fields were first covered with pioneer woodland (Salix, Corylus and Betula), then Quercus-dominated secondary forest and finally a late-successional forest with Fagus sylvatica, Carpinus betulus and Ilex aquifolium, an evolution that took over 300 years. The results also indicate that the observed increase of Fagus during the Early Middle Ages, which was never an important element in the woodland vegetation in northern Belgium before, was related to climatic changes rather than anthropogenic factors.

Masting and regeneration dynamics were investigated in a long-term perspective using Abies cephalonica as a study tree species. Extensive fieldwork was implemented in Parnitha National Park, Greece, following a large-scale wildfire. Annual cone production was monitored for a 5-year period in 130 tagged trees, in 13 plots with 10 individuals each, established both within the unburned part of the forest and in surviving fragments of the burned area. In the most recent masting year, a high percentage (88%) of cone-bearing trees was recorded, along with a sizeable, average cone production (40.8 cones per tree). In the intermediate, non-masting years, the corresponding values ranged from 2% to 55% and 0.08 to 5.9 cones per tree, respectively. The reproduction process is affected by both tree density and regional climatic conditions, in particular temperature during spring of the maturation year and precipitation during spring and summer of the previous year. For the first time according to our knowledge, natural regeneration was recorded for a 4-year period, in 13 permanent transects within the monitoring plots, in relation with a masting event and the additional implications of a preceding wildfire. Highest mean density of seedlings and saplings (11.4 per m2) was observed during the first spring after masting. In the non-masting years, the corresponding value ranged from 2.1 to 2.9 per m2. Seedling survival during their first summer was considerable (30–76%) but stabilized afterwards (1–3 years) at a lower level (10–20%). The particular post-masting seedling flush was followed by an extremely high mortality rate (88.6%) and cannot represent a major recruitment event.

The upper canopy of some rain forests in New Caledonia is dominated by single species. These monodominants are commonly secondary species, their dominance not persisting without disturbance. We tested whether dominance is associated with efficient uptake and use of nutrients (N, P and K), comparing between seedlings of monodominants (Nothofagus spp., Arillastrum gummiferum and Cerberiopsis candelabra) and 14 subordinates, grown in a nursery house. We also tested whether this trend applies more broadly to shade-intolerant trees that regenerate episodically (ER species) versus shade-tolerant trees that regenerate continuously (CR species). In the sun treatment, monodominants had higher photosynthetic nutrient-use efficiency and productivity for N and K, and uptake efficiency for N, P and K, than subordinates; ER species had higher photosynthetic nutrient-use efficiency for N, P and K, and uptake efficiency for N and P, than CR species. Uptake efficiency and productivity per nutrient mass were uncorrelated across species, yet Nothofagus spp., A. gummiferum and C. candelabra combined high levels of both traits for N, and Nothofagus spp. and A. gummiferum combined moderate to high levels for P, in sun-grown seedlings. This trait combination may contribute substantially to competitiveness and post-disturbance dominance on these nutrient-poor soils.

A comprehensive assessment of the effect of disturbances on tropical and subtropical forests is needed to better understand their impacts on forest structure and diversity. Although taxonomic and functional diversity measures have been successfully adopted in this context, phylogenetic diversity metrics are still poorly explored. We compared the phylogenetic structure of the seed rain and regenerating seedling community in patches of an old-growth Atlantic Forest remnant dominated or not by a ruderal bamboo species, Guadua tagoara. We sampled those patches before and after illegal harvesting of the palm Euterpe edulis thus assessing if the harvesting led to changes in the phylogenetic structure of the seed rain and the regenerating community in both patches. Bamboo-dominated patches showed a significantly higher presence of species in the seed rain that were more distantly related to each other in the phylogeny than expected by chance compared with patches without bamboos, but this difference disappeared after palm-heart harvesting. Contrary to what we expected, we did not find significant changes in the phylogenetic structure of seedlings before or after palm-heart harvesting. The phylogenetic structure at the tips of the phylogeny was random overall. The maintenance of a higher presence of far relatives in the phylogeny of the seedling community suggests, assuming trait conservatism, that despite bamboo dominance and palm-heart harvesting, functional diversity is being preserved at least in the early regenerating stages and in the time frame of the study. However, higher presence of pioneer taxa after palm-heart harvest indicates that this disturbance may lead old-growth areas to earlier successional stages.

Protected areas, including nature reserves and management areas, are established for the conservation of biological diversity and protection of the associated natural and cultural resources. These objectives, however, are often in conflict with socio-economic development. We investigated the plant communities dominated by the dove tree Davidia involucrata in a nature reserve on Mount Jinfo, China, where people intensively manage large areas of bamboo stands. We found a significant lack of small-sized main stems of D. involucrata (0–25 cm diameter at breast height; height > 1.3 m) and newly emerging sprouts in the reserve. The height-class distribution showed a unimodal pattern, with most individuals (of both D. involucrata and co-occurring species) concentrated in the 16–28 m height-class, and few individuals in the shrub and sub-canopy layer (1.3–8 m). Existing practices to facilitate the spread of bamboo stands, and the need to develop a local market for bamboo shoots received little consideration when the nature reserve was established in 1979 to protect D. involucrata. To conserve D. involucrata on Mount Jinfo the appropriate authorities and local parties involved in bamboo harvesting need to focus on methods that are favourable to the life history of this and other tree species, and strategies for their regeneration. These methods will also benefit the conservation of other highly valued trees that share similar life-history characteristics with D. involucrata.

Third-year heights, third-year root-collar diameters, and 3 yr volume growth of loblolly pine seedlings were examined in relation to a) root-collar diameter class at time of planting and b) herbaceous weed control. Treatments were a) no weed control and b) complete control for 2 yr. For both weed control treatments, means for third-year heights, groundline diameters, and volume growth were related positively to initial seedling diameter. The influence of initial seedling diameter on third-year diameters and heights did not differ among weed control treatments. However, the influence of initial diameter on volume growth did differ among weed control treatments. Thus, when using herbaceous weed control, additional gains in early volume growth can be realized by planting seedlings with large root-collar diameters.

Seed-consuming rodents are increasingly recognized for their roles in the maintenance of tree species diversity, by acting on crucial post seed-dispersal processes. Yet, studies examining the extent to which rodents may act as secondary seed dispersers and/or predators in Madagascar's forests are limited. Thread-marking seed experiments were run to address this, using the seeds of two native large-seeded, frugivore-dispersed tree species (Abrahamia thouvenotii and Cryptocarya crassifolia), in disturbed and less-disturbed habitats in the rain forests of Ranomafana National Park, during the dry season. Data show that post-dispersal handling of seeds by rodents (predation and removal) was significantly lower in disturbed than in less-disturbed habitats (1.31–3.78 times lower; n = 2200). Also, seeds were more likely to be predated or left on the forest ground after removal than being larder- or scatter-hoarded: 27–78% of the removed seeds were found on the ground, <12% found in burrows and there was no evidence of scatter-hoarding (n = 132). Based on pictures from camera traps, the native rodent species, Nesomys rufus, was potentially responsible for seed predation and/or removal in the less-disturbed habitat; but no indication of the rodent species active in the disturbed habitat was obtained. The lack of scatter-hoarding suggests a limited role of rodents in secondary seed dispersal in this system. These findings form a preliminary account of the potential roles of rodents in post seed-dispersal processes in Madagascar's forests, but this warrants further study.

The relative importance of different bottom-up-mediated effects in shaping insect communities in tropical secondary forests are poorly understood. Here, we explore the roles of vegetation structure, forest age, local topography (valley vs. hill top) and soil variables in predicting fruit-feeding butterfly and tree community composition, and tree community composition in predicting fruit-feeding butterfly community composition, in different-aged naturally regenerating and primary forests of Kibale National Park, Uganda. We also examine which variables are best predictors of fruit-feeding butterfly species richness or diversity. Butterflies (88 species) were sampled with a banana-baited trap and trees (98 taxa) with a 40 × 20-m sampling plot at 80 sampling sites. The environmental variables explained 31% of the variation in the tree community composition, the best predictors being local topography, forest age and cover of Acanthus pubescens (a shrub possibly arresting succession). The fruit-feeding butterfly community composition was better predicted by tree community composition (explaining 10% of the variation) rather than vegetation structure, local topography or soil factors. Environmental variables and tree species richness (or diversity) were poor predictors of butterfly species richness (or diversity). Our results emphasize the importance of tree community to recovery of herbivorous insect communities in tropical secondary forests.

Although seed dispersal plays a critical role for plant regeneration, the long-term benefits of frugivores for recruitment success have been poorly explored. We evaluated the relative importance of tree species abundance and of frugivore-related factors for successful plant recruitment on 18 tree species in a lowland Colombian rain forest. We combined census data from four 1-ha plots of trees (>10 cm dbh), saplings (1–5 cm dbh) and seedlings (<1.7 m) with a dataset describing tree–frugivore interactions. Seedling abundance was higher for large-seeded species dispersed by the spider monkey, while sapling abundance was higher for large-seeded species dispersed by birds. The identity of the dispersal agent and its interaction with seed size explained 20–30% of the total variance in seedling and sapling abundance across scales. Seed size consistently influenced the species abundance of seedlings and saplings across scales, but in opposite ways. These developmental changes suggest that what is beneficial to seedlings is not necessarily beneficial to saplings. Species identity explained 10–50% of the total variance in seedling and sapling abundance among and within 1-ha plots. Overall, our findings suggest that recruitment success is context-dependent as the relative importance of the different variables addressed may shift along spatial and temporal scales.

Secondary forests promote an increased abundance of leaf-cutting ants (LCA) but the consequences on forest dynamics have been poorly addressed. Here we examine seedling assemblage attributes, seed germination and seedling survival across foraging zones of Atta cephalotes colonies inhabiting 15 second-growth patches (25–47 y old) of Atlantic forest. Seeds and seedlings were monitored within foraging zones and control sites over 1 y, including spots around ant nests. Overall, 1862 seedlings from 108 plant species were recorded. Seedling density decreased by 53% in foraging-zone plots (3.31 ± 0.23 seedlings m−2) when compared with control plots (7.02 ± 0.44 seedlings m−2) and a similar decrease was observed for species richness. Ant-induced alterations in the seedling assemblage were further indicated by segregation between foraging-zone and control plots (NMDS), habitat effects on species similarity (ANOSIM), and indicator tree species associated with control plots. While seed germination and seedling survivorship were uncorrelated to either nest distance or age of second-growth stands (with the exception of Tapirira guianensis), defoliation by LCAs was a significant cause of seedling mortality. Our results suggest that LCAs interfere with successional trajectories of Atlantic forest as foraging zones filter seedling establishment, supporting less-dense, impoverished and convergent seedling assemblages.

Logged forests form an increasingly large proportion of tropical landscapes but disproportionately few studies have studied the impact of forest disturbance, e.g. lightly vs. heavily logged, on tree and seedling communities simultaneously. We sampled all trees (on 1 ha) and all recently germinated seedlings (on 90 m2) in three lightly and three heavily logged sites in each of the following three East African tropical forests: Budongo Forest and Mabira Forest in Uganda and Kakamega Forest in Kenya. We analysed species richness, diversity, abundance and community composition of late- and early-successional trees and seedlings. We recorded no difference in species richness or diversity of late-successional or early-successional trees between lightly and heavily logged sites. However, the abundance of late-successional species was lower in heavily than lightly logged sites. Moreover, there was no difference in species richness or diversity of trees among the three forests. Yet, abundances of late-successional trees were higher in Budongo Forest than in Mabira Forest and Kakamega Forest. Species richness, diversity and abundance of seedlings did not differ between lightly and heavily logged sites. Only the abundance of seedlings of late-successional species differed among the forests with more individuals in Budongo Forest than in Mabira Forest. This was corroborated by non-metric multidimensional scaling (NMDS) showing clear differences in composition of tree and seedling communities among the three forests. Thus, both, the tree and seedling communities differed significantly among the three forests but not between lightly and heavily logged sites.

The role of chimpanzees (Pan troglodytes) as seed dispersers in the Kibale Forest Reserve of western Uganda was assessed by analysing 1849 dung samples from two chimpanzee communities and by conducting germination trials on dispersed and non-dispersed seeds. Of the chimpanzee dung samples, 98.5% contained seeds, and fig seeds were the most common. The number of large seeds (>2 mm) per dung sample was often high, even for species with a relatively large seed. For example, Mimusops bagshawei has a 15-mm diameter seed and had an average of 26.5 seeds per sample. In addition, many seed species were found in the dung repeatedly over several months. Germination trials demonstrated that the species of seed commonly collected from dung were viable. Comparisons of both the rate and success of germination of chimpanzee-dispersed seeds with seeds collected directly from the parent trees, showed that gut passage increased the speed and probability of germination. The number of large seeds dispersed by the chimpanzee population was estimated at 369 large seeds km-1 day-1. We suggest that in Kibale, chimpanzees may play a more significant role in primary seed dispersal than implied by their low numbers and biomass.

The Kibale Forest, western Uganda, is the only site where studies have compared the impact of elephants on rainforest regeneration in logged and unlogged control areas. Elephants used heavily logged areas more than lightly logged and unlogged areas. Forest gaps were used more by elephants than closed-canopy areas and large gaps more than small ones. Gaps were larger in logged than unlogged forest. There were lower densities of young trees (saplings and poles) and a higher incidence of elephant damage to them in heavily logged forest than in lightly logged and unlogged sites. Elephant use of an area and damage to young trees was inversely or unrelated to the density of young trees and directly related to the density of herbaceous tangle. Heavy logging resulted in large areas of herbaceous tangle, which attracted elephants who suppressed forest regeneration by damaging young trees and perpetuating the herbaceous tangle. The tangle directly competed with regeneration of young trees while also attracting elephants and rodents (seed and seedling predators) and facilitating increased windthrow of trees. Selective browsing of young trees by elephants affected rates of regeneration, growth form and species composition. Rather than remove elephants, a more effective and humane approach to long-term management of logging is to reduce logging offtake and incidental damage caused by timber extraction.

We studied the impact of dung deposition by the red howler monkey (Alouatta seniculus), and subsequent burial by dung beetles and other biotic and abiotic processes, on the distribution of small seeds in the soil seed bank (Nouragues Reserve, French Guiana). Seeds were collected from 54 soil samples taken under three sleeping sites and adjoining control sites, at three positions according to a fixed grid and at three different depths (0–2, 2–4 and 4–6 cm). Despite large differences between the three sites, defecation areas (latrines) were found to contain more seeds and higher seed diversity than control areas. Seed density decreased with depth in the top 6 cm in two sites but not in the third. Shannon diversity decreased with depth in both defecation and control areas. Differences in the distribution of seeds of different species were found according to size and growth habits (pioneer vs non-pioneer species). The viability of seeds, ascertained from toughness and integrity of the seed coat, varied according to depth, site and defecation. Seed viability was on average higher in defecation areas compared with control areas.

Leaf-cutting ants (species of Atta and Acromyrmex) are dominant herbivores and play a key role as ecosystem engineers of tropical and subtropical America (Fowler et al. 1989, Weber 1972). Not only are they among the most polyphagous and voracious herbivorous insects, cutting up to 15% y−1 of the leaf standing crop (Urbas et al. 2007, Wirth et al. 2003), but also they strongly affect the light environment and the nature of plant assemblages via ant-nest-mediated disturbances (Farji-Brener & Illes 2000, Hull-Sanders & Howard 2003, Moutinho et al. 2003). Some leaf-cutting ant species have turned into an omnipresent feature of present-day neotropical landscapes and a wealth of studies has documented their abundance to drastically increase with increasing agricultural land use, disturbance and deforestation/fragmentation (Fowler et al. 1986, Jaffe 1986, Terborgh et al. 2001, Vasconcelos & Cherrett 1995, Wirth et al. 2007). In view of their ecosystem engineering capacity and the ever-increasing conversion of tropical forests into agricultural landscapes (Wright 2005), it has been concluded that disturbance-driven accumulation of Atta colonies leads to far-reaching and deleterious consequences in present-day neotropical landscapes (Wirth et al. 2008). But what about the opposite scenario of regenerating forests? Is disturbance-mediated hyper-abundance of leaf-cutting ants a reversible phenomenon? We believe that this question is highly relevant because (1) knowledge of the dynamics of leaf-cutting ant populations during forest regeneration is lacking and (2) natural secondary succession has become a widespread phenomenon after land is abandoned or temporarily fallowed (Wright 2005). In the Brazilian Amazon during the 1990s, for example, secondary forests have reclaimed 31% of the once deforested land (Perz & Skole 2003).

This paper examines the composition and density of soil seed banks under a mature seasonal rain forest (>150 years old), three secondary forests (4 yr Trema orientalis forest, 9 yr Macaranga denticulata forest and 25 yr Mallotus paniculatus forest) and in a slash-and-burn field of Xishuangbanna, southwest China. Seeds in the secondary forests germinated most rapidly in the first week, while the seeds of the seasonal rain forest and the slash-and-burn field soils germinated slowly over the first 6 weeks and peaked in the seventh and eighth weeks. Seed densities were 4585–65,665 seeds m−2 for forest sites and 1130 seeds m−2 for the slash-and-burn field in the top 10 cm of the soils. The seed density decreased with soil depth in the forest sites and tended to decline during succession. Herbs accounted for the largest proportion of seeds at all five sites. The importance of woody species, however, increased as forests became older. Slash and burn eliminated a large number of seeds in the upper soil and, consequently, reversed the vertical distribution of seeds in the soil and had a negative impact on family, genus and species richness of the soil seed bank as well.

The dependence of tree seedling survival and growth on light availability was evaluated over 15 mo in three second-growth, wet forest stands (15–18 y old) in north-eastern Costa Rica. Seedlings of four canopy tree species (Dipteryx panamensis, Hyeronima alchorneoides, Virola koschnyi and Vochysia guatemalensis) were planted into four canopy treatments in three replicated stands and in a pasture site, spanning a nearly complete gradient of light availability. Survival and growth of all species increased in response to increasing light availability, but species differed in survival in shaded microsites (6–20% light transmittance) and in growth increments per light increase. Hyeronima showed the highest mortality at low light levels and the highest relative height growth increase per light increase. In contrast, Virola showed high survival at low and moderate light, but showed the lowest leaf area and above-ground biomass per light increase among all species. Dipteryx and Vochysia maintained relatively high rates of survival and growth across the entire light gradient. Hyeronima and Virola showed trade-offs between growth and survival responses to light, unlike Dipteryx and Vochysia. Differences among species in seedling survival at low light may be determined by a variety of physiological and morphological traits that may or may not be mechanistically linked to growth responses.