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8 - Genome-wide association analysis in schizophrenia

from Part II - Genome-wide studies in disease biology

Published online by Cambridge University Press:  18 December 2015

Sven Stringer
Affiliation:
University Medical Center
Dorien H. Nieman
Affiliation:
University of Amsterdam
René S. Kahn
Affiliation:
University Medical Center
Eske M. Derks
Affiliation:
University of Amsterdam
Krishnarao Appasani
Affiliation:
GeneExpression Systems, Inc., Massachusetts
Stephen W. Scherer
Affiliation:
University of Toronto
Peter M. Visscher
Affiliation:
University of Queensland
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Summary

Introduction

Schizophrenia is a severe mental disorder with a typical onset in adolescence or young adulthood. Global lifetime prevalence is about 0.3–0.7% (van Os and Kapur, 2009). Symptoms can be divided into positive symptoms (e.g., delusions and hallucinations), negative (deficit) symptoms (e.g., anhedonia, blunted affect, and avolition), and disorganization symptoms (e.g. disorganized speech). In addition, the majority of schizophrenia patients show cognitive dysfunctioning. In general, schizophrenia patients have deficits in most cognitive domains (e.g., attention, memory, and executive functioning) approximately one standard deviation below the normative mean (Mesholam-Gately et al., 2009). However, there is no specific cognitive profile that distinguishes schizophrenia patients from patients with other Diagnostic and Statistical Manual of Mental Disorders (DSM) (American Psychiatric Association, 2000) diagnoses. Schizophrenia is often preceded by a prodromal period of months to years in which mild psychotic and other symptoms can occur and psycho-social functioning deteriorates.

A short case example:

Michael is a 20-year-old philosophy student who has been skipping a lot of classes lately. In the class room he hears his name being whispered by fellow students in the front row, although the distance is too far to be able to hear them. During the breaks, he hears other students talk and laugh about him. Sometimes he thinks they are conspiring to kill him, especially because he also hears them talking about how they are going to get him when he is alone in his room. He is unable to concentrate on what the professor says in the classroom. It is as if he cannot extract the meaning of what is being said. He has suffered from that problem for several years. His grades have decreased during this period and he will probably drop out from university. He also experiences a feeling of emptiness, which started years ago. Nothing seems to get through to him. Even the birth of his niece left him cold. He experiences a loss of identity. Lately, he sometimes has the feeling that someone else is putting thoughts in his head or moves his limbs outside his own will.

Schizophrenia has remained a mental disorder with an unknown etiology, unchanged prevalence, and disabling outcomes for the vast majority of the patients. Sustained recovery occurs in less than 14% within the first five years following a psychotic episode and in an additional 16% in a later phase (Harrison et al., 2001; Robinson et al., 2004).

Type
Chapter
Information
Genome-Wide Association Studies
From Polymorphism to Personalized Medicine
, pp. 106 - 122
Publisher: Cambridge University Press
Print publication year: 2016

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References

Abecasis, G.R., Altshuler, D., Auton, A., et al. (2010). A map of human genome variation from population-scale sequencing. Nature, 467, 1061–1073.Google ScholarPubMed
Altshuler, D.M., Gibbs, R.A., Peltonen, L., et al. (2010). Integrating common and rare genetic variation in diverse human populations. Nature, 467, 52–58.Google ScholarPubMed
American Psychiatric Association (2000). Diagnostic and Statistical Manual of Mental Disorders: DSM-IV-TR. American Psychiatric Association, Arlington, VA.
Bemis, L.T., Chen, R., Amato, C.M., et al. (2008). MicroRNA-137 targets microphthalmia-associated transcription factor in melanoma cell lines. Cancer Res., 68, 1362–1368.CrossRefGoogle ScholarPubMed
Betancur, C. (2011). Etiological heterogeneity in autism spectrum disorders: more than 100 genetic and genomic disorders and still counting. Brain Res., 1380, 42–77.CrossRefGoogle ScholarPubMed
Chiurazzi, P., Schwartz, C.E., Gecz, J. and Neri, G. (2008). XLMR genes: update 2007. Eur. J. Hum. Genet., 16(4), 422–434.CrossRefGoogle ScholarPubMed
Derks, E.M. and Ophoff, R.A., Genetic Risk and Outcome of Psychosis (GROUP) (2013). Replication and refinement of the role of rs548181 in schizophrenia: results from a family based study. Am. J. Med. Genet. B Neuropsych. Genet., 162B, 75–77.Google ScholarPubMed
Derks, E.M., Allardyce, J., Boks, M.P., et al. (2010). Kraepelin was right: a latent class analysis of symptom dimensions in patients and controls. Schizophr. Bull., 38, 495–505.Google ScholarPubMed
Derks, E.M., Vorstman, J.A., Ripke, S., Kahn, R.S., Schizophrenia Psychiatric Genomic Consortium and Ophoff, R.A. (2012). Investigation of the genetic association between quantitative measures of psychosis and schizophrenia: a polygenic risk score analysis. PLoS ONE, 7, e37852.CrossRefGoogle ScholarPubMed
Eichler, E.E., Flint, J., Gibson, G., et al. (2010). Missing heritability and strategies for finding the underlying causes of complex disease. Nature Rev. Genet., 11, 446–450.CrossRefGoogle ScholarPubMed
Fanous, A.H., Zhou, B., Aggen, S.H., et al. (2012). Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms. Am. J. Psych., 169, 1309–1317.CrossRefGoogle ScholarPubMed
First, M.B., Spitzer, R.L., Gibbon, M. and Williams, J.B. (1997). Structured Clinical Interview for DSM-IV Axis I Disorders (SCID-I), Clinician Version, Administration Booklet. American Psychiatric Association, Arlington, VA.Google Scholar
Frazer, K.A., Murray, S.S., Schork, N.J. and Topol, E.J. (2009). Human genetic variation and its contribution to complex traits. Nature Rev. Genet., 10, 241–251.CrossRefGoogle ScholarPubMed
Gibson, G. (2012). Rare and common variants: twenty arguments. Nature Rev. Genet., 13, 135–145.CrossRefGoogle ScholarPubMed
Gottesman, I. (1991). Schizophrenia Genesis: The Origin of Madness. Freeman, New York, NY.Google Scholar
Harrison, G., Hopper, K., Craig, T., et al. (2001). Recovery from psychotic illness: a 15- and 25-year international follow-up study. Br. J. Psych., 178, 506–517.CrossRefGoogle ScholarPubMed
Hemani, G., Knott, S. and Haley, C. (2013). An evolutionary perspective on epistasis and the missing heritability. PLoS Genet., 9, e1003295.CrossRefGoogle ScholarPubMed
Hill, W.G., Goddard, M.E.and Visscher, P.M. (2008). Data and theory point to mainly additive genetic variance for complex traits. PLoS Genet., 4, e1000008.CrossRefGoogle ScholarPubMed
Hindorff, L.A., Sethupathy, P., Junkins, H.A., et al. (2009). Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc. Natl Acad. Sci. USA, 106, 9362–9367.CrossRefGoogle ScholarPubMed
Huang, J., Perlis, R.H., Lee, P.H., et al. (2010). Cross-disorder genomewide analysis of schizophrenia, bipolar disorder, and depression. Am. J. Psych., 167, 1254–1263.CrossRefGoogle ScholarPubMed
Inlow, J.K. and Restifo, L.L. (2004). Molecular and comparative genetics of mental retardation. Genetics, 166(2), 835–881.CrossRefGoogle ScholarPubMed
Kahn, R.S. and Keefe, R. S. (2013). Schizophrenia is a cognitive illness: time for a change in focus. JAMA Psych., 70, 1107–1112.Google ScholarPubMed
Kirov, G., Zaharieva, I., Georgieva, L., et al. (2009). A genome-wide association study in 574 schizophrenia trios using DNA pooling. Molecul. Psych., 14, 796–803.Google ScholarPubMed
Koboldt, D.C., Steinberg, K.M., Larson, D.E., Wilson, R.K. and Mardis, E.R. (2013). The Next-Generation Sequencing Revolution and Its Impact on Genomics. Cell, 155, 27–38.CrossRefGoogle ScholarPubMed
Kunii, Y., Hyde, T.M., Ye, T., et al. (2014). Revisiting DARPP-32 in postmortem human brain: changes in schizophrenia and bipolar disorder and genetic associations with t-DARPP-32 expression. Molec. Psych., 19, 192–199.CrossRefGoogle ScholarPubMed
Lee, S.H., Decandia, T.R., Ripke, S., et al. (2012). Estimating the proportion of variation in susceptibility to schizophrenia captured by common SNPs. Nature Genet., 44, 831.CrossRefGoogle ScholarPubMed
Lee, S.H., Ripke, S., Neale, B.M., et al. (2013). Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs. Nature Genet., 45, 984–994.CrossRefGoogle ScholarPubMed
Lichtenstein, P., Yip, B.H., Bjork, C., et al. (2009). Common genetic determinants of schizophrenia and bipolar disorder in Swedish families: a population-based study. Lancet, 373, 234–239.CrossRefGoogle ScholarPubMed
Lieberman, J.A., Stroup, T.S., McEvoy, J.P., et al. (2005). Effectiveness of antipsychotic drugs in patients with chronic schizophrenia. New Engl. J. Med., 353, 1209–1223.CrossRefGoogle ScholarPubMed
Maher, B. (2008). Personal genomes: the case of the missing heritability. Nature, 456, 18–21.CrossRefGoogle ScholarPubMed
Malhotra, D. and Sebat, J. (2012). CNVs: harbingers of a rare variant revolution in psychiatric genetics. Cell, 148, 1223–1241.CrossRefGoogle ScholarPubMed
Manolio, T.A., Collins, F.S., Cox, N.J., et al. (2009). Finding the missing heritability of complex diseases. Nature, 461, 747–753.CrossRefGoogle ScholarPubMed
Marwaha, S., Johnson, S., Bebbington, P., et al. (2007). Rates and correlates of employment in people with schizophrenia in the UK, France and Germany. Br. J. Psych., 191, 30–37.CrossRefGoogle ScholarPubMed
McGue, M. and Gottesman, I.I. (1989). Genetic linkage in schizophrenia: perspectives from genetic epidemiology. Schizophr. Bull., 15, 453–464.CrossRefGoogle ScholarPubMed
McKusick, V.A. (2007). Mendelian Inheritance in Man and its online version, OMIM. Am. J. Hum. Genet., 80, 588–604.CrossRefGoogle ScholarPubMed
Mesholam-Gately, R.I., Giuliano, A.J., Goff, K.P., Faraone, S.V. and Seidman, L.J. (2009). Neurocognition in first-episode schizophrenia: a meta-analytic review. Neuropsychology, 23, 315.CrossRefGoogle ScholarPubMed
Miller, G. (2010). Beyond DSM: seeking a brain-based classification of mental illness. Science, 327, 1437.CrossRefGoogle ScholarPubMed
Nair, A. and Howard, R. (2013). ENCODE and a new landscape for psychiatric genetics. Br. J. Psych., 203, 84–85.CrossRefGoogle Scholar
Purcell, S.M., Wray, N.R., Stone, J.L., et al. (2009). Common polygenic variation contributes to risk of schizophrenia and bipolar disorder. Nature, 460, 748–752.Google ScholarPubMed
Ripke, S., Sanders, A.R., Kendler, K.S., et al. (2011). Genome-wide association study identifies five new schizophrenia loci. Nature Genet., 43, 969–976.Google Scholar
Ripke, S., O'Dushlaine, C., Chambert, K., et al. (2013). Genome-wide association analysis identifies 13 new risk loci for schizophrenia. Nature Genet., 45, 1150–1159.CrossRefGoogle Scholar
Robinson, D.G., Woerner, M.G., McMeniman, M., Mendelowitz, A. and Bilder, R.M. (2004). Symptomatic and functional recovery from a first episode of schizophrenia or schizoaffective disorder. Am. J. Psych., 161, 473–479.CrossRefGoogle ScholarPubMed
Shi, J., Levinson, D.F., Duan, J., et al. (2009). Common variants on chromosome 6p22.1 are associated with schizophrenia. Nature, 460, 753–757.Google ScholarPubMed
Silber, J., Lim, D.A., Petritsch, C., et al. (2008). miR-124 and miR-137 inhibit proliferation of glioblastoma multiforme cells and induce differentiation of brain tumor stem cells. BMC Med., 6, 14.CrossRefGoogle ScholarPubMed
Smoller, J.W., Craddock, N., Kendler, K., et al. (2013). Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis. Lancet, 381, 1371–1379.Google Scholar
Smrt, R.D., Szulwach, K.E., Pfeiffer, R.L., et al. (2010). MicroRNA miR-137 regulates neuronal maturation by targeting ubiquitin ligase mind bomb-1. Stem Cells, 28, 1060–1070.CrossRefGoogle ScholarPubMed
Solovieff, N., Cotsapas, C., Lee, P.H., Purcell, S.M. and Smoller, J.W. (2013). Pleiotropy in complex traits: challenges and strategies. Nature Rev. Genet., 14, 483–495.CrossRefGoogle ScholarPubMed
Stahl, E.A., Wegmann, D., Trynka, G., et al. (2012). Bayesian inference analyses of the polygenic architecture of rheumatoid arthritis. Nature Genet., 44, 483–489.CrossRefGoogle ScholarPubMed
Stefansson, H., Ophoff, R.A., Steinberg, S., et al. (2009). Common variants conferring risk of schizophrenia. Nature, 460, 744–747.Google ScholarPubMed
Stringer, S., Derks, E.M., Kahn, R.S., Hill, W.G. and Wray, N.R. (2013). Assumptions and properties of limiting pathway models for analysis of epistasis in complex traits. PLoS ONE, 8, e68913.CrossRefGoogle ScholarPubMed
Sullivan, P.F., Kendler, K.S. and Neale, M.C. (2003). Schizophrenia as a complex trait: evidence from a meta-analysis of twin studies. Arch. Gen. Psych., 60, 1187–1192.CrossRefGoogle ScholarPubMed
Sullivan, P.F., Daly, M.J. and O'Donovan, M. (2012). Genetic architectures of psychiatric disorders: the emerging picture and its implications. Nature Rev. Genet., 13, 537–551.CrossRefGoogle ScholarPubMed
Szulwach, K.E., Li, X., Smrt, R.D., et al. (2010). Cross talk between microRNA and epigenetic regulation in adult neurogenesis. J. Cell Biol., 189, 127–141.CrossRefGoogle ScholarPubMed
van Os, J. and Kapur, S. (2009). Schizophrenia. Lancet, 374, 635–645.CrossRefGoogle ScholarPubMed
Visscher, P.M., Goddard, M.E., Derks, E.M. and Wray, N.R. (2012). Evidence-based psychiatric genetics, AKA the false dichotomy between common and rare variant hypotheses. Molec. Psych., 17, 474–485.CrossRefGoogle ScholarPubMed
Voineskos, A.N., Lett, T.A., Lerch, J.P., et al. (2011). Neurexin-1 and frontal lobe white matter: an overlapping intermediate phenotype for schizophrenia and autism spectrum disorders. PloS ONE, 6, e20982.CrossRefGoogle ScholarPubMed
Walters, J.T., Rujescu, D., Franke, B., et al. (2013). The role of the major histocompatibility complex region in cognition and brain structure: a schizophrenia GWAS follow-up. Am. J. Psych., 170, 877–885.CrossRefGoogle ScholarPubMed
Wegmann, D., Leuenberger, C., Neuenschwander, S. and Excoffier, L. (2010). Abctoolbox: a versatile toolkit for approximate bayesian computations. BMC Bioinform., 11, 116.CrossRefGoogle ScholarPubMed
Wessman, J., Paunio, T., Tuulio-Henriksson, A., et al. (2009). Mixture model clustering of phenotype features reveals evidence for association of DTNBP1 to a specific subtype of schizophrenia. Biol. Psych., 66, 990–996.Google ScholarPubMed
Wray, N.R. and Gottesman, I.I. (2012). Using summary data from the Danish national registers to estimate heritabilities for schizophrenia, bipolar disorder, and major depressive disorder. Front. Genet., 3, 118.CrossRefGoogle ScholarPubMed
Yang, J., Benyamin, B., McEvoy, B.P., et al. (2010). Common SNPs explain a large proportion of the heritability for human height. Nature Genet., 42, 565–569.CrossRefGoogle ScholarPubMed
Yang, J., Lee, S.H., Goddard, M.E. and Visscher, P.M. (2011). GCTA: a tool for genome-wide complex trait analysis. Am. J. Hum. Genet., 88, 76–82.CrossRefGoogle ScholarPubMed
Zuk, O., Hechter, E., Sunyaev, S.R. and Lander, E.S. (2012). The mystery of missing heritability: genetic interactions create phantom heritability. Proc. Natl Acad. Sci. USA, 109, 1193–1198.CrossRefGoogle ScholarPubMed

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