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What role for genomics in fisheries managementand aquaculture?

Published online by Cambridge University Press:  27 October 2007

Roman Wenne ,
Pierre Boudry ,
Jakob Hemmer-Hansen ,
Krzysztof P. Lubieniecki ,
Anna Was  and
Antti Kause
Roman Wenne
Affiliation:
Department of Genetics and Marine Biotechnology, Institute of Oceanology, Polish Academy of Sciences, Powstañców Warszawy 55, 81-712 Sopot, Poland
Pierre Boudry
Affiliation:
IFREMER Laboratoire de Génétique et Pathologie, 17390 La Tremblade, France
Jakob Hemmer-Hansen
Affiliation:
Danish Institute for Fisheries Research, Department of Inland Fisheries, Vejlsøvej 39, 8600 Silkeborg, Denmark
Krzysztof P. Lubieniecki
Affiliation:
Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Dr., Burnaby, BC, V5A 1S6, Canada
Anna Was
Affiliation:
Molecular Ecology Research Group, Galway-Mayo Institute of Technology, Galway, Ireland
Antti Kause
Affiliation:
MTT Agrifood Research Finland, Biotechnology and Food Research, Biometrical Genetics, 31600 Jokioinen, Finland
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Abstract

The development and application of genomics has been facilitated in a number of fields by the availability of new methodologies and tools, such as high throughput DNA sequencing and complementary DNA (cDNA) microarrays. Genomic tools are already used in research on commercially important fish and shellfish species. Thousands of expressed sequence tags (EST) are now available for some of these species, and the sequencing of complete genomes of tilapia, cod, salmonids, flatfishes, sea bass and Pacific oyster has been proposed. Microarray technology through simultaneous analysis of the expression of thousands of genes allows the identification of candidate genes involved in the function of multiple physiological, morphological and behavioural traits of interests in organisms and populations from different environments. This paper reviews the current development of genomic technologies, and pinpoints their potential beneficial applications as well as implications for fisheries management and aquaculture.

Keywords

GenomicsGeneticsFisheriesMaricultureQuantitative trait lociFishOyster
Type
Research Article
Information
Aquatic Living Resources , Volume 20 , Issue 3 , July 2007 , pp. 241 - 255
Copyright
© EDP Sciences, IFREMER, IRD, 2007

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References

Abernathy, J., Xu, P., Li, P., Xu, D., Kucuktas, H., Klesiun, P., Arias, C., Liu, Z., 2007, Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis. BMC Genomics 8, 176. CrossRef
Agresti, J.J., Seki, S., Cnaani, A., Poompuang, S., Hallerman, E.M., Umiel, N., Hulata, G., Gall, G.A.E., May, B., 2000, Breeding new strains of tilapia: development of an artificial center of origin and linkage map based on AFLP and microsatellite loci. Aquaculture 185, 43-56. CrossRef
Akey, J.M., Zhang, G., Zhang, K., Jin, L., Shriver, M.D., 2002, Interrogating a high-density SNP map for signatures of natural selection. Genome Res. 12, 1805-1814. CrossRef
Anderson, E.C., Garza, J.C., 2006, Power of single-nucleotide polymorphisms for large-scale parentage inference. Genetics 172, 2567-2582. CrossRef
Araneda, C., Neira, R., Iturra, P., 2005, Identification of a dominant SCAR marker associated with colour traits in Coho salmon (Oncorhynchus kisutch). Aquaculture 247, 67-73. CrossRef
Artieri, C.G., Mitchell, L.A., Ng, S.H.S., Parisotto, S.E., Danzmann, R.G., Hoyheim, B., Phillips, R.B., Morasch, M., Koop, B.F., Davidson, W.S., 2006, Identification of the sex-determining locus of Atlantic salmon (Salmo salar) on chromosome 2. Cytogenet. Genome Res. 112, 152-159. CrossRef
Aubin-Horth, N., Letcher, B.H., Hofmann, H.A., 2005a, Interaction of rearing environment and reproductive tactic on gene expression profiles in Atlantic salmon. J. Hered. 96, 261-278. CrossRef
Aubin-Horth, N., Landry, C.R., Letcher, B.H., Hofmann, H.A., 2005b, Alternative life histories shape brain gene expression profiles in males of the same population. Proc. Biol. Sci. 272, 1655-1662. CrossRef
Bachère, E., Guéguen, Y., Gonzalez, M., de Lorgeril, J., Garnier, J., Romestand, B., 2004, Insights into the anti-microbial defence of marine invertebrates: the penaeid shrimps and the oyster Crassostrea gigas. Immunol. Rev. 198, 149-168. CrossRef
Banks, M.A., Eichert, W., Olsen, J.B., 2003, Which genetic loci have greater population assignment power? Bioinformatics 19, 1436-1438. CrossRef
Bao, B., Peatman, E., Xu, P., Baoprasertkul, P., Wang, G., Liu, Z., 2006, Characterization of 23 CC chemokine genes and analysis of their expression in channel catfish (Ictalurus punctatus). Dev. Comp. Immunol. 30, 783-796. CrossRef
Baranski, M., Loughnan, S., Austin, C.M., Robinson, N., 2006, A microsatellite linkage map of the blacklip abalone, Haliotis rubra. Anim Genet. 37, 563-570. CrossRef
Beacham, T.D., Lapointe, M., Candy, J.R., Miller, K.M., Withler, R.E., 2004, DNA in action: Rapid application of DNA variation to sockeye salmon fisheries management. Conserv. Genet. 5, 411-416. CrossRef
Beaumont, M.A., Nichols, R.A., 1996, Evaluating loci for use in the genetic analysis of population structure. Proc. R. Soc. London Ser. B-Biol. Sci. 263, 1619-1626. CrossRef
Bonin, A., Taberlet, P., Miaud, C., Pompanon, F., 2006, Explorative genome scan to detect candidate loci for adaptation along a gradient of altitude in the common frog (Rana temporaria) Mol. Biol. Evol. 23, 773-783. CrossRef
Bonnet, E., Fostier, A., Bobe, J., 2007, Microarray-based analysis of fish egg quality after natural or controlled ovulation. BMC Genomics 8, 55. CrossRef
Boudry, P., Collet, B., Cornette, F., Hervouet, V., Bonhomme, F., 2002, High variance in reproductive success of the Pacific oyster (Crassostrea gigas Thunberg) revealed by microsatellite-based parentage analysis of multifactorial crosses. Aquaculture 204, 283-296. CrossRef
Breyne, P., Dreesen, R., Cannoot, B., Rombaut, D., Vandepoele, K., Rombauts, S., Vanderhaeghen, R., Inze, D., Zabeau, M., 2003, Quantitative cDNA-AFLP analysis for genome-wide expression studies Mol. Genet. Genom. 269, 173-179.
Bridle, A., Morrison, R., Cupit, P.M., Cunningham, B.M., Nowak, B., 2006a, Quantitation of immune response gene expression and cellular localisation of interleukin-1 $\beta $ mRNA in Atlantic salmon, Salmo salar, affected by amoebic gill disease (AGD). Vet. Immunol. Immunopathol. 114, 121-134. CrossRef
Bridle, A.R., Morrison, R.N., Nowak, B.F., 2006b, The expression of immune-regulatory genes in rainbow trout, Oncorhynchus mykiss, during an amoebic gill disease (AGD) infection. Fish Shellfish Immunol. 20, 346-364. CrossRef
Campbell N.R., Narum S.R., 2007, Identification of novel SNPs in Chinook salmon and variation among life history types. Trans. Am. Fish. Soc., in press.
Cnaani, A., Zilberman, N., Tinman, S., Hulata, G., Ron, M., 2004, Genome-scan analysis for quantitative trait loci in an F-2 tilapia hybrid. Mol. Genet. Genom. 272, 162-172. CrossRef
Chini, V., Rimoldi, S., Terova, G., Saroglia, M., Rossi, F., Bernardini, G., Gornati, R., 2006, EST-based identification of genes expressed in the liver of adult seabass (Dicentrarchus labrax L.). Gene 376, 102-106. CrossRef
Chistiakov, D.A., Hellemans, B., Haley, C.S., Law, A.S., Tsigenopoulos, C.S., Kotoulas, G., Bertotto, D., Libertini, A., Volckaert, F.A.M., 2005, A microsatellite linkage map of the European sea bass Dicentrarchus labrax L. Genetics 170, 1821-1826. CrossRef
Coimbra, M.R.M., Kobayashi, K., Koretsugu, S., Hasegawa, O., Ohara, E., Ozaki, A., Sakamoto, T., Naruse, K., Okamoto, N., 2003, A genetic linkage map of the Japanese flounder Paralichthys olivaceus. Aquaculture 220, 203-218. CrossRef
Cossins, A.R., Crawford, D.L., 2005, Opinion - Fish as models for environmental genomicsNat. Rev. Genet. 6, 324-333. CrossRef
Crollius, H.R., Weissenbach, J., 2005, Fish genomics and biology. Genome Res. 15, 1675-1682. CrossRef
Cunningham, C., Hikima, J.I., Jenny, M.J., Chapman, R.W., Fang, G.C., Saski, C., Lundqvist, M.L., Wing, R.A., Cupit, P.M., Gross, P.S., Warr, G.W., Tomkins, J.P., 2006, New resources for marine genomics: Bacterial artificial chromosome libraries for the eastern and pacific oysters (Crassostrea virginica and C. gigas). Mar. Biotech. 8, 521-533. CrossRef
Danzmann, R.G., Jackson, T.R., Ferguson, M.M., 1999, Epistasis in allelic expression at upper temperature tolerance QTL in rainbow trout. Aquaculture 173, 45-58. CrossRef
Doyle R.W., Herbinger C.M., 1994, The use of DNA fingerprinting for high-intensity within-family selection in fish breeding, Proc.5 th World Congress on Genetics Applied to Livestock Production, 7-12 August 1994, Vol. 19, Dep. Animal and Poultry Science, University of Guelph, Guelph, pp. 364-371.
Dulvy N.K., Sadovy Y., Reynolds J.D. 2003. Extinction vulnerability in marine populations. Fish Fish. 4, 25-64.
Fast, M.D., Muise, D.M., Easy, R.E., Ross, N.W., Johnson, S.C., 2006, The effects of Lepeophthirius salmonis infection on the stress response and immunological status of Atlantic salmon (Salmo salar). Fish Shellfish Immunol. 21, 228-241. CrossRef
Fernando, R.L., Grossman, M., 1989, Marker-assisted selection using best linear unbiased prediction. Genet. Sel. Evol. 33, 209-229.
Franch, R., Louro, B., Tsalavouta, M., Chatziplis, D., Tsigenopoulos, C.S., Sarropoulou, E., Antonello, J., Magoulas, A., Mylonas, C.C., Babbucci, M., Patarnello, T., Power, D.M., Kotoulas, G., Bargelloni, L., 2006, A genetic linkage map of the hermaphrodite teleost fish Sparus aurata L. Genetics 174, 851-861. CrossRef
Fuji, K., Kobayashi, K., Hasegawa, O., Coimbra, M.R.M., Sakamoto, T., Okamoto, N., 2006, Identification of a single major genetic locus controlling the resistance to lymphocystis disease in Japanese flounder (Paralichthys olivaceus). Aquaculture 254, 203-210. CrossRef
Gharbi, K., Gautier, A., Danzmann, R.G., Gharbi, S., Sakamoto, T., Hoyheim, B., Taggart, J.B., Cairney, M., Powell, R., Krieg, F., Okamoto, N., Ferguson, M.M., Holm, L.E., Guyomard, R., 2006, A linkage map for brown trout (Salmo trutta): Chromosome homeologies and comparative genome organization with other Salmonid fish. Genetics 172, 2405-2419. CrossRef
Gilbey, J., Verspoor, E., McLay, A., Houlihan, D., 2004, A microsatellite linkage map for Atlantic salmon (Salmo salar). Anim Genet. 35, 98-105. CrossRef
Gibson, G., Weir, B., 2005, The quantitative genetics of transcription. Trends Genet. 21, 616-623. CrossRef
Gracey, A.Y., Fraser, E.J., Li, W., Fang, Y., Taylor, R.R., Rogers, J., Brass, A., Cossins, A.R., 2004, Coping with cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate. Proc. Natl. Acad. Sci. USA 101, 16970–16975. CrossRef
Grimholt U., Larsen S., Nordmo R., Midtlyng P., Kjoeglum S., Storset A., Saebo S., Stet R.J.M., 2003, MHC polymorphism and disease resistance in Atlantic salmon (Salmo salar); facing pathogens with single expressed major histocompatibility class I and class II loci. Immunogenetics 55, 210-219.
Guyomard, R., Mauger, S., Tabet-Canale, K., Martineau, S., Genet, C., Krieg, F., Quillet, E., 2006, A type I and type II microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) with presumptive coverage of all chromosome arms. BMC Genomics 7, 302. CrossRef
Hayes B.J., Chamberlain A.J., Goddard M.E., 2006a, Use of markers in linkage disequilibrium with QTL in breeding programs. Proc.8th World Congress on Genetics Applied to Livestock Production, August 13-18, 2006, Belo Horizonte, MG, Brasil.
Hayes, B.J., Gjuvsland, A., Omholt, S., 2006b, Power of QTL mapping experiments in commercial Atlantic salmon populations, exploiting linkage and linkage disequilibrium and effect of limited recombination in males. Heredity 97, 19-26. CrossRef
Hayes, B., Goddard, M.E., 2004, Break-even cost of genotyping genetic mutations affecting economic traits in Australian pig enterprises. Livestock Production Sci. 89, 235-242. CrossRef
Hayes, B., Laerdahl, J.K., Lien, S., Moen, T., Berg, P., Hindar, K., Davidson, W.S., Koop, B.F., Adzhubei, A., Høyheim, B., 2007, An extensive resource of single nucleotide polymorphism markers associated with Atlantic salmon (Salmo salar) expressed sequences. Aquaculture 265, 82-90. CrossRef
Hedgecock, D., Gaffney, P.M., Goulletquer, P., Guo, X.M., Reece, K., Warr, G.W., 2005, The case of sequencing the Pacific oyster genome. J. Shellfish Res. 24, 429-441.
Hedgecock, D., Lin, J. Z., DeCola, S., Haudenschild, C.D., Meyer, E., Manahan, D.T., Bowen, B., 2007, Transcriptomic analysis of growth heterosis in larval Pacific oysters (Crassostrea gigas). Proc. Natl. Acad. Sci. USA 104, 2313-2318. CrossRef
Hilborn, R., Quinn, T.P., Schindler, D.E., Rogers, D.E., 2003, Biocomplexity and fisheries sustainability. Proc. Natl. Acad. Sci. USA 100, 6564-6568. CrossRef
Hizer, S.E., Dhar, A.K., Klimpel, K.R., Garcia, D.K, 2002, RAPD markers as predictors of infectious hypodermal and hematopoietic necrosis virus (IHHNV) resistance in shrimp (Litopenaeus stylirostris). Genome 45, 1-7. CrossRef
Hubert, S., Hedgecock, D., 2004, Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas. Genetics 168, 351-362. CrossRef
Huvet, A., Herpin, A., Degremont, L., Labreuche, Y., Samain, J.F., Cunningham, C, 2004, The identification of genes from the oyster Crassostrea gigas that are differentially expressed in progeny exhibiting opposed susceptibility to summer mortality. Gene 343, 211-220. CrossRef
ICES, 2006, Report of the Working Group on the Application of Genetics in Fisheries and Mariculture, 24-27 March 2006, Newport, Ireland. ICES CM 2006/MCC:04.
Jackson, T.R., Ferguson, M.M., Danzmann, R.G., Fishback, A.G., Ihssen, P.E., O'Connell, M., Ccrease, T.J., 1998, Identification of two QTL influencing upper temperature tolerance in three rainbow trout (Oncorhynchus mykiss) half-sib families. Heredity 80, 143-151. CrossRef
Jenny M.J., Chapman R.W., Mancia A., Chen Y.A., McKillen D.J., Trent H., Lang P., Escoubas J.M., Bachere E., Boulo V., Liu Z.J., Gross P.S., Cunningham C., Cupit P.M., Tanguy A., Guo X., Moraga D., Boutet I., Huvet A, De Guise S., Almeida J.S., Warr G.W., 2007, A cDNA microarray for Crassostrea virginica and C. gigas. Mar. Biotechnol. [doi.10.1007/s 10126-007-9041-1]
Jones, A.G., Ardren, W.R., 2003, Methods of parentage analysis in natural populations. Mol. Ecol. 12, 2511-2523. CrossRef
Kauer, M.O., Dieringer, D., Schlotterer, C., 2003, A microsatellite variability screen for positive selection associated with the “Out of Africa” habitat expansion of Drosophila melanogaster. Genetics 165, 1137-1148.
Kause, A., Ritola, O., Paananen, T., Mäntysaari, E., Eskelinen, U., 2003, Selection against early maturity in farmed rainbow trout: the quantitative genetics of sexual dimorphism and genotype-by-environment interactions. Aquaculture 228, 53-68. CrossRef
Kause, A., Ritola, O., Paananen, T., Wahlroos, H., Mäntysaari, E.A., 2005, Genetic trends in growth, sexual maturity and skeletal deformations, and rate of inbreeding in a breeding programme for rainbow trout. Aquaculture 247, 177-187. CrossRef
Kimura, T., Jindo, T., Narita, T., Naruse, K., Kobayashi, D., Shin, I. T., Kitagawa, T., Sakaguchi, T., Mitani, H., Shima, A., Kohara, Y., Takeda, H., 2004, Large-scale isolation of ESTs from medaka embryos and its application to medaka developmental genetics. Mech. Dev. 121, 915-932. CrossRef
Kjoglum, S., Grimholt, U., Larsen, S., 2005, Non-MHC genetic and tank effects influence disease challenge tests in Atlantic salmon (Salmo salar). Aquaculture 250, 102-109. CrossRef
Kocher, T.D., Lee, W.J., Sobolewska, H., Penman, D., McAndrew, B., 1998, A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus). Genetics 148, 1225-1232.
Kohn, M.H., Murphy, W.J., Ostrander, E.A., Wayne, R.K., 2006, Genomics and conservation genetics. Trends Ecol. Evol. 21, 629-637. CrossRef
Koskinen, H., Pehkonen, P., Vehniainen, E., Krasnov, A., Rexroad, C.E., Afanasyev, S., Molsa, H., Oikari, A., 2004, Response of rainbow trout transcriptome to model chemical contaminants. Biochem. Biophys. Res. Comm. 320, 745-53. CrossRef
Kurobe, T., Yasuike, M., Kimura, T., Hirono, I., Aoki, T., 2005, Expression profiling of immune-related genes from Japanese flounder Paralichthys olivaceus kidney cells using cDNA microarrays. Dev. Comp. Immunol. 29, 515–523. CrossRef
Lallias D., Lapègue S., Haley C., Heurtebise S., Boudry P., Beaumont A., 2007a, European flat oyster, Ostrea edulis: towards the identification of Bonamia resistance QTLs. 8th International Marine Biotechnology Conference. Eilat, Israel, 11-16 March 2007.
Lallias, D., Lapègue, S., Hecquet, C., Boudry, P., Beaumont, A.R., 2007b, AFLP-based genetic linkage maps of the blue mussel (Mytilus edulis). Anim. Genet. 38, 340-349. CrossRef
Lang, P., Langdon, C.J., Camara, M., 2006, Transcriptome analysis of Pacific oyster Crassostrea gigas families exposed to heat stress. J. Shellfish Res. 25, 746.
Larsen P.F., Nielsen E.E. Williams T.D., Hemmer-Hansen J., Chipman J.K., Kruhøffer M., Grønkjær P., George S.G., Dyrskjøt L., Loeschcke V., 2007, Adaptive differences in gene expression in European flounder (Platichthys flesus). Mol. Ecol., in press.
Launey, S., Barre, M., Gerard, A., Naciri Graven, Y., 2001, Population bottleneck and effective size in Bonamia ostreae-resistant populations of Ostrea edulis as inferred by microsatellite markers. Genet. Res. 78, 259-270. CrossRef
Lee, B.Y., Lee, W.J., Streelman, J.T., Carleton, K.L., Howe, A.E., Hulata, G., Slettan, A., Stern, J.E., Terai, Y., Kocher, T.D., 2005, A second-generation genetic linkage map of tilapia (Oreochromis spp.). Genetics 170, 237-244. CrossRef
Lemaire, C., Allegrucci, G., Naciri, M., Bahri-Sfar, L., Kara, H., Bonhomme, F., 2000, Do discrepancies between microsatellite and allozyme variation reveal differential selection between sea and lagoon in the sea bass (Dicentrarchus labrax)? Mol. Ecol. 9, 457-467.
Li, Y., Byrne, K., Miggiano, E., Whan, V., Moore, S., Keys, S., Crocos, P., Preton, N., Lehnert, S., 2003, Genetic mapping of the Kuruma prawn Penaeus japonicus using AFLP markers. Aquaculture 219, 143-156. CrossRef
Li, Y., Dierens, L., Byrne, K., Miggiano, E., Lehnert, S., Preston, N., Lyons, R., 2006a, QTL detection of production traits for the Kuruma prawn Penaeus japonicus (Bate) using AFLP markers. Aquaculture 258, 198-210. CrossRef
Li, L., Guo, X., 2004, AFLP-based genetic linkage maps of the Pacific oyster Crassostrea gigas Thunberg. Mar. Biotech. 6, 26-36. CrossRef
Li, Z., Li, J., Wang, Q., He, Y., Liu, P., 2006b, AFLP-based genetic linkage map of marine shrimp Penaeus (Fenneropenaeus) chinensis. Aquaculture 261, 463-472. CrossRef
Li, R.W., Waldbieser, G.C., 2006, Production and utilization of a high-density oligonucleotide microarray in channel catfish, Ictalurus punctatus. BMC Genomics 7, 134. CrossRef
Li, L., Xiang, J., Liu, X., Zhang, Y., Dong, B., Zhang, X, 2005, Construction of AFLP-based genetic linkage map for Zhikong scallop, Chlamys farreri Joneset Preston and mapping of sex-linked markers. Aquaculture 245, 63-73. CrossRef
Lindenstrom, T., Sigh, J., Dalgaard, M.B., Buchmann, K., 2006, Skin expression of IL 1 $\beta $ in East Atlantic salmon, Salmo salar L., highly susceptible to Gyrodactylus salaris infections is enhanced compared to a low susceptibility Baltic stock. J. Fish Dis. 29, 123-128. CrossRef
Lindenstrom T., Buchmann K., Secombes C., 2003, Gyrodactylus derjavini infection elicits interleukin 1 beta expression in rainbow trout skin. Fish Shellfish Immunol. 15, 107-115.
Liu Z.J., Cordes J.F., 2004, DNA marker technologies and their applications in aquaculture genetics Aquaculture 242, 735-736.
Liu, X., Liu, X., Guo, X., Gao, Q., Zhao, H., Zhang, G., 2006, A preliminary genetic linkage map of the Pacific abalone Haliotis discus hannai Ino. Mar. Biotech. 8, 386-397. CrossRef
Liu, Z., Karsi, A., Li, P., Cao, D., Dunham, R., 2003, An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family. Genetics 165, 687-694.
Liu, X., Liu, X., Zhang, G., 2007, Identification of quantitative trait loci for growth-related traits in the Pacific abalone Haliotis discus hannai Ino. Aquac. Res. 38, 789-797. CrossRef
Luikart, G., England, P.R., Tallmon, D., Jordan, S., Taberlet, P., 2003, The power and promise of population genomics: From genotyping to genome typing. Nat. Rev. Genet. 4, 981-994. CrossRef
Martin, S.A., Blaney, S.C., Houlihan, D.F., Secombes, C.J., 2006, Transcriptome response following administration of a live bacterial vaccine in Atlantic salmon (Salmo salar). Mol. Immunol. 43, 2089-2106. CrossRef
Martinez, V., Thorgaard, G., Robinson, B., Sillanpää, M.J., 2005, An application of Bayesian QTL mapping to early development in double haploid lines of rainbow trout including environmental effects. Genet. Res. 86, 209-221. CrossRef
Martyniuk, C.J., Perry, G.M.L., Mogahadam, H.K., Ferguson, M.M., Danzmann, R.G., 2003, The genetic architecture of correlations among growth-related traits and male age at maturation in rainbow trout. J. Fish Biol. 63, 746-764. CrossRef
Matsuoka, M.P., Gharrett, A.J., Wilmot, R.L., Smoker, W.W., 2004, Genetic linkage mapping of allozyme loci in even- and odd-year pink salmon (Oncorhynchus gorbuscha). J. Hered. 95, 421-429. CrossRef
Maynard Smith, J., Haigh, J., 1974, Hitch-hiking effect of a favorable gene. Genet. Res. 23, 23-35. CrossRef
Meuwissen, T.H.E., Hayes, B.J., Goddard, M.E., 2001, Prediction of total genetic value using genome-wide dense marker maps. Genetics 157, 1819-1829.
Moen, T., Hoyheim, B., Munck, H., Gomez-Raya, L., 2004a, A linkage map of Atlantic salmon (Salmo salar) reveals an uncommonly large difference in recombination rate between the sexes. Anim. Genet. 35, 81-92. CrossRef
Moen, T., Fjalestad, K.T., Munck, H., Gomez-Raya, L., 2004b, A multistage testing strategy for detection of quantitative trait loci affecting disease resistance in Atlantic salmon. Genetics 167, 851-858. CrossRef
Moen, T., Agresti, J.J., Cnaani, A., Moses, H., Famula, T.R., Hulata, G., Gall, G.A.E., May, B., 2004c, A genome scan of a four-way tilapia cross supports the existence of a quantitative trait locus for cold tolerance on linkage group 23. Aquac. Res. 35, 893-904. CrossRef
Montano-Perez, K., Villalpando - Canchola E., Vargas – Albores F., 2006, RFLP (amplified fragment length polymorphism) and its application in aquaculture. Interciencia 31, 563-569
Moore, S.S., Whan, V., Davis, G.P., Byrne, K., Hetzel, D.J.S., Preston, N., 1999, The development and application of genetic markers for the Kuruma prawn Penaeus japonicus. Aquaculture 173, 19-32. CrossRef
Morin P.A., Luikart G., Wayne R.K. and the SNP workshop group, 2004. SNPs in ecology, evolution and conservation. Trends Ecol. Evol. 19, 208-216.
Moritz, C., 2002, Strategies to protect biological diversity and the evolutionary processes that sustain it. Systematic Biol. 51, 238-254. CrossRef
Nakamura, K., Ozaki, A., Akutsu, T., Iwai, K., Sakamoto, T., Yoshizaki, G., Okamoto, N., 2001, Genetic mapping of the dominant albino locus in rainbow trout (Oncorhynchus mykiss). Mol. Genet. Genomics 265, 687-693.
Newton K., Peters R., Raftos D., 2004. Phenoloxidase and QX disease resistance in Sydney rock oysters (Saccostrea glomerata). Dev. Comp. Immunol. 28, 565-569.
Ng, S.H.S., Artieri, C.G., Bosdet, I.E., Chiu, R., Danzmann, R.G., Davidson, W.S., Ferguson, M.M., Fjell, C.D., Hoyheim, B., Jones, S.J.M., de Jong, P.J., Koop, B.F., Krzywinski, M.I., Lubieniecki, K., Marra, M.A., Mitchell, L.A., Mathewson, C., Osoegawa, K., Parisotto, S.E., Phillips, R.B., Rise, M.L., Von Schalburg, K.R., Schein, J.E., Shin, H., Siddiqui, A., Thorsen, J, Wye, N., Yang, G., Zhu, B., 2005, A physical map of the genome of Atlantic salmon, Salmo salar. Genomics 86, 396-404. CrossRef
Ng, S.H.S., Chang, A., Brown, G.D., Koop, B.F., Davidson, W.S., 2005, Type I microsatellite markers from Atlantic salmon (Salmo salar) expressed sequence tags. Mol. Ecol. Notes 5, 762-766. CrossRef
Nichols, K.M., Bartholomew, J., Thorgaard, G.H., 2003a, Mapping multiple genetic loci associated with Ceratomyxa shasta resistance in Oncorhynchus mykiss. Dis. Aquat. Org. 56, 145-154. CrossRef
Nichols, K.M., Young, W.P., Danzmann, R.G., Robison, B.D., Rexroad, C., Noakes, M., Phillips, R.B., Bentzen, P., Spies, I., Knudsen, K., Allendorf, F.W., Cunningham, B.M., Brunelli, J., Zhang, H., Ristow, S., Drew, R., Brown, K.H., Wheeler, P.A., Thorgaard, G.H., 2003b, A consolidated linkage map for rainbow trout (Oncorhynchus mykiss). Anim. Genet. 34, 102-115. CrossRef
Nichols, K.M., Wheeler, P.A., Thorgaard, G.H., 2004, Quantitative trait loci analyses for meristic traits in Oncorhynchus mykiss. Environ. Biol. Fish. 69, 317-331. CrossRef
Oleksiak, M.F., Churchill, G.A., Crawford, D.L., 2002, Variation in gene expression within and among natural populations. Nat. Genet. 32, 261-266. CrossRef
Opsahl-Ferstad, H.G., Rudi, H., Ruyter, B., Refstie, S., 2003, Biotechnological approaches to modify rapeseed oil composition for application in aquaculture. Plant Sci. 165, 349-357. CrossRef
Ozaki, A., Sakamoto, T., Khoo, S., Nakamura, K., Coimbra, M.R.M., Akutsu, T., Okamoto, N., 2001, Quantitative trait loci (QTLs) associated with resistance/susceptibility to infectious pancreatic necrosis virus (IPNV) in rainbow trout (Oncorhynchus mykiss). Mol. Genet. Genomics 265, 23-31.
Palti, Y., Gahr, S.A., Hansen, J.D., Rexroad, IIIC.E., 2004, Characterization of a new BAC library for rainbow trout: evidence for multi-locus duplication. Anim. Genet. 35, 130-133. CrossRef
Peatman, E. Baoprasertkul, P., Terhune, J., Xu, P., Nandi, S., Kucuktas, H., Li, P., Wang, S., Somridhivej, B., Dunham, R., Liu, Z.J., 2007, Expression analysis of the acute phase response in channel catfish (Ictalurus punctatus) after infection with a Gram negative bacterium. Dev. Comp. Immunol. [doi.10.1016/j.dci.2007.03.003].
Pérez, F., Erazo, C., Zhinaula, M., Volckaert, F., Calderon, J., 2004, A sex-specific linkage map of the white shrimp Penaeus (Litopenaeus) vannamei based on AFLP markers. Aquaculture 242, 105-118. CrossRef
Perry, G.M.L., Ferguson, M., Sakamoto, T., Danzmann, R.G., 2005, Sex-linked quantitative trait loci for thermotolerance and length in the rainbow trout. J. Hered. 96, 97-107. CrossRef
Poompuang, S., Na-Nakorn, U., 2004, A preliminary genetic map of walking catfish (Clarias macrocephalus). Aquaculture 232, 195-203. CrossRef
Purcell, M.K., Nichols, K.M., Winton, J.R., Kurath, G,. Thorgaard G.H., Wheeler P., Hansen J.D., Herwig R.P., Park L.K., 2006, Comprehensive gene expression profiling following DNA vaccination of rainbow trout against infectious hematopoietic virus. Mol. Immunol. 43, 2089-2106. CrossRef
Quiniou, S.M.A., Katagiri, T., Miller, N.W., Wilson, M., Wolters, W.R., Waldbieser, G.C., 2003, Construction and characterization of a BAC library from a gynogenetic channel catfish, Ictalurus punctatus. Genet. Sel. Evol. 35, 1–11. CrossRef
Quiniou, S.M.A., Waldbieser, G.C., Duke, M.V., 2007, A first generation BAC-based physical map of the channel catfish genome. BMC Genomics 8, 40. CrossRef
Quinton, C., Kause, A., Koskela, J., 2007, Breeding salmonids for feed efficiency in current fishmeal and future plant-based diet environments. Genet. Sel. Evol. 39, 431-446. CrossRef
Reid D.P., Szanto Z., Glebe B., Danzmann R.G., Ferguson M.M., 2005, QTL for body weight and condition factor in Atlantic salmon (Salmo salar); comparative analysis with rainbow trout (Oncorhynchus mykiss) and Arctic charr (Salvelinus aplinus). Heredity 94, 166-172.
Rengmark, A.H., Slettan, A., Skaala, O., Lie, O., Lingaas, F., 2006, Genetic variability in wild and farmed Atlantic salmon (Salmo salar) strains estimated by SNP and microsatellites. Aquaculture 253, 229-237. CrossRef
Renn, S.C.P., Aubin-Horth, N., Hofmann, H.A., 2004, Biologically meaningful expression profiling across species using heterologous hybridization to a cDNA microarray. BMC Genomics 5, 42. CrossRef
Reynolds, J.D., Dulvy, N.K., Goodwin, N.B., Hutchings, J.A., 2005, Biology of extinction risk in marine fishes. Proc. R. Soc. London B 272, 2337-2344. CrossRef
Rise, M.L., von Schalburg, K.R., Brown, G.D., Devlin, R.H., Mawer, M.A., Kuipers, N., Busby, M., Beetz-Sargent, M., Alberto, R., Gibbs, A.R., Hunt, P., Shukin, R., Zeznik, J.A., Nelson, C., Jones, S.M.R., Smailus, D.E., Jones, S.J.M., Schein, J.E., Marra, M.A., Butterfield, Y.S.N., Stott, J.M., Ng, S.H., Davidson, W.S., Koop, B.F., 2004a, Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics. Genome Res. 14, 478-490. CrossRef
Rise, M.L., Jones, S.R.M., Brown, G.D., von Schalburg, K.R., Davidson, W.S., Koop, B.F., 2004b, Piscirickettsia salmonis infection consistently regulates expression of a suite of genes in cultured Atlantic salmon macrophages and in hematopoietic kidney. Physiol. Genomics 20, 21-35. CrossRef
Roberge, C., Einum, S., Guderley, H., Bernatchez, L., 2006, Rapid parallel evolutionary changes of gene transcription profiles in farmed Atlantic salmon. Mol. Ecol. 15, 9-20. CrossRef
Robison, B.D., Wheeler, P.A., Sundin, K., Sikka, P., Thorgaard, G.H., 2001, Composite interval mapping reveals a major locus influencing embryonic development rate in rainbow trout (Oncorhynchus mykiss). J. Hered. 92, 16-22. CrossRef
Rodriguez, M.F., LaPatra, S., Williams, S., Famula, T., May, B., 2004, Genetic markers associated with resistance to infectious hematopoietic necrosis in rainbow and steelhead trout (Oncorhynchus mykiss) backcrosses. Aquaculture 241, 93-115. CrossRef
Ryynänen, H.J., Primmer, C., 2006, Single nucleotide polymorphism (SNP) discovery in duplicated genomes: intron-primed exon-crossing (IPEC) as a strategy for avoiding amplification of duplicated loci in Atlantic salmon (Salmo salar) and other salmonid fishes. BMC Genomics 7, 192. CrossRef
Saavedra, C., Bachere, E., 2006, Bivalve genomics. Aquaculture 256, 1-14. CrossRef
Sakamoto, T., Danzmann, R.G., Gharbi, K., Howard, P., Ozaki, A., Khoo, S.K., Woram, R.A., Okamoto, N., Ferguson, M.M., Holm, L.E., Guyomard, R., Hoyheim, B., 2000, A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics 155, 1331-1345.
Sakamoto, T., Danzmann, R.G., Okamoto, N., Ferguson, M.M., Ihssen, P.E., 1999, Linkage analysis of quantitative trait loci associated with spawning time in rainbow trout (Oncorhynchus mykiss). Aquaculture 173, 33-43. CrossRef
Salem, M., Kennedy, P.B., Rexroad, C.E., Yao, J.B., 2006, Microarray gene expression analysis in atrophying rainbow trout muscle: a unique non-mammalian muscle degradation model. Physiol. Genomics 28, 33-45. CrossRef
Sarropoulou, E., Power, D.M., Magoulas, A., Geisler, R., Kotoulas, G., 2005a, Comparative analysis and characterization of expressed sequence tags in gilthead sea bream (Sparus aurata) liver and embryos. Aquaculture 243, 69-81. CrossRef
Sarropoulou, E., Kotoulas, G., Power, D.M., Geisler, R., 2005b, Gene expression profiling of gilthead sea bream during early development and detection of stress – related genes be application of cDNA microarray technology. Physiol. Genomics 23, 182-191. CrossRef
Sauvage C., Bierne N., Lapègue S., Boudry P., 2007, Single nucleotide polymorphisms and their relationship to codon usage bias in the Pacific oyster Crassostrea gigas. Gene [doi.10.1016/j.gene.2007.05.011].
Savan, R., Sakai, M., 2006, Genomics of fish cytokines. Comp. Biochem. Physiol. D-Genomics Proteonomics 1, 89-101. CrossRef
Schlötterer, C., 2002, Towards a molecular characterization of adaptation in local populations. Current Opinion Genet. Dev. 12, 683-687. CrossRef
Sekino, M., Hara, M., 2007, Linkage maps for the Pacific abalone (Genus Haliotis) based on microsatellite DNA markers. Genetics 175, 945-958. CrossRef
Senger, F., Priat, C., Hitte, C., Sarropoulou, E., Franch, R., Geisler, R., Bargelloni, L., Power, D., Galibert, F., 2006, The first radiation hybrid map of a perch – like fish: The gilthead seabream (Sparus aurata L.). Genomics 87, 793-800. CrossRef
Sigh J., Lindenstrom T., Buchmann K., 2004, Expression of pro-inflammatory cytokines in rainbow trout (Oncorhynchus mykiss) during an infection with Ichthyophthirius multifiliis. Fish Shellfish Immunol. 17, 75-86.
Silverstein, J.T., Weber, G.M., Rexroad, C.E., Vallejo, R.L., 2006, Genetics and genomics – Integration of molecular genetics into a breeding program for rainbow trout. Isr. J. Aquac. Bamidgeh 58, 231-237
Sironen, A., Thomsen, B., Andersson, M., Ahola, V., Vilkki, J., 2006, An intronic insertion in KPL2 results in aberrant splicing and causes the immotile short-tail sperm defect in the pig. Proc. Natl. Acad. Sci. USA 103, 5006-5011. CrossRef
Smith, C.T., Elfstrom, C.M., Seeb, L.W., Seeb, J.E., 2005a, Use of sequence data from rainbow trout and Atlantic salmon for SNP detection in Pacific salmon. Mol. Ecol. 14, 4193-4203. CrossRef
Smith, C.T., Templin, W.D., Seeb, J.E., Seeb, U.W., 2005b, Single nucleotide polymorphisms provide rapid and accurate estimates of the proportions of US and Canadian Chinook salmon caught in Yukon River fisheries. North Am. J. Fish. Manage. 25, 944-953. CrossRef
Sonesson, A.K., 2005, A combination of walk-back and optimum contribution selection in fish. Genet. Sel. Evol. 37, 587-599. CrossRef
Soule, M., LaFrentz, S., Cain, K., LaPatra, S., Call, D.R., 2005, Polymorphism in 16S rRNA genes from Flavobacterium psychrophilum correlate with elastin hydrolysis and tetracycline resistance. Dis. Aquat. Org. 65, 209-216. CrossRef
Stenvik, J., Wesmajervi, M.S., Damsgard, B., Delghandi, M., 2006, Genotyping of pantophysin I (Pan I) of Atlantic cod (Gadus morhua L.) by allele-specific PCR. Mol. Ecol. Notes 6, 272-275. CrossRef
Storz, J.F., 2005, Using genome scans of DNA poplymorphism to infer adaptive population divergence. Mol. Ecol. 14, 671-688. CrossRef
Storz, J.F., Dubach, J.M., 2004, Natural selection drives altitudinal divergence at the albumin locus in deer mice, Peromyscus maniculatus. Evolution 58, 1342-1352. CrossRef
Storz J.F., Hoekstra H.E. 2007, The study of adaptation and speciation in the genomic era. J. Mammalog. 88, 1-4
Sun, X., Liang, L., 2004, A genetic linkage map of common carp (Cyprinus carpio L.) and mapping of a locus associated with cold tolerance. Aquaculture 238, 165-172. CrossRef
Sundin, K., Brown, K.H., Drew, R.E., Nichols, K.M., Wheeler, P.A., Thorgaard, G.H., 2005, Genetic analysis of a development rate QTL in backcrosses of clonal rainbow trout, Oncorhynchus mykiss. Aquaculture 247, 75-83. CrossRef
Tao, W.J., Boulding, E.G., 2003, Associations between single nucleotide polymorphisms in candidate genes and growth rate in Arctic charr (Salvelinus alpinus L.). Heredity 91, 60-69. CrossRef
Taris, N., Baron, S., Sharbel, T.F., Sauvage, C., Boudry, P., 2005, A combined microsatellite multiplexing and boiling DNA extraction method for high throughput parentage analyses in the Pacific Oyster (Crassostrea gigas). Aquac. Res. 36, 516-518. CrossRef
Taris, N., Ernande, B., Boudry, P., 2006, Phenotypic and genetic consequences of size selection at the larval stage in the Pacific oyster (Crassostrea gigas). J. Exp. Mar. Biol. Ecol. 333, 147-158. CrossRef
Thorsen, J., Zhu, B., Frengen, E., Osoegawa, K., de Jong, P.J., Koop, B.F., Davidson, W.S., Hoyheim, B., 2005, A highly redundant BAC library of Atlantic salmon (Salmo salar): an important tool for salmon projects. BMC Genomics 6, 50 CrossRef
Tilton, S.C., Givan, S.A., Pereira, C.B., Bailey, G.S., Williams, D.E., 2006, Toxicogenomic profiling of the hepatic tumor promoters indole-3-carbinol, 17 $\beta $ -estradiol and $\beta $ -naphthoflavone in rainbow trout. Toxicol. Sci. 90, 61-72. CrossRef
Ton, C., Stamatiou, D., Dzau, V.J., Liew, C.C., 2002, Construction of a zebrafish cDNA microarray: gene expression profiling of the zebrafish. Biochem. Biophys. Res. Comm. 296, 1134-1142. CrossRef
Torto-Alalibo, T., Tian, M.Y., Gajendran, K., Waugh, M.E., van West, P., Kamoun, S., 2005, Expressed sequence tags from the oomycete fish pathogen Saprolegnia parasitica reveal putative virulence factors. BMC Microbiol. 5, 46. CrossRef
Vandeputte, M., Mauger, S., Dupont-Nivet, M., 2006, An evaluation of allowing for mismatches as a way to manage genotyping errors in parentage assignment by exclusion. Mol. Ecol. Notes 6, 265-267. CrossRef
Vandeputte, M., Kocour, M., Mauger, S., Dupont-Nivet, M., De Guerry, D., Gela, D., Vallod, D., Linhart, O., Chevassus, B., 2005, Heritability estimates for growth-related traits using microsatellite parentage assignment in juvenile common carp (Cyprinus carpio L.). Aquaculture 247, 31-32.
van Tienderen, P.H., de Haan, A.A., van der Linden, C.G., Vosman, B., 2002, Biodiversity assessment using markers for ecologically important traits. Trends Ecol. Evol. 17, 577-582. CrossRef
Vasemägi, A., Nilsson, J., Primmer, C.R., 2005, Expressed sequence tag-linked microsatellites as a source of gene-associated polymorphisms for detecting signatures of divergent selection in Atlantic salmon (Salmo salar L.). Mol. Biol. Evol. 22, 1067-1076. CrossRef
Venier, P., De Pitta, C., Pallavicini, A., Marsano, F., Varotto, L., Romualdi, C., Dondero, F., Viarengo, A., Lanfranchi, G., 2006, Development of mussel mRNA profiling: Can gene expression trends reveal coastal water pollution? Mutation Research-Fundamental and Molecular Mechanisms of Mutagenesis 602, 121-134. CrossRef
Venkatesh, B., Hettwer, U., Koopmann, B., Karlovsky, P., 2005, Conversion of cDNA differential display results (DDRT-PCR) into quantitative transcription profiles. BMC Genomics 6, 51. CrossRef
Volckaert F.A.M.J., Batargias C., Chatziplis D., Chistiakov D., Haley C.S., Hellemans B., Kotoulas G., Law A., Libertini A., McAndrew B.J., Tsigenopoulos C., Whitaker H.A., 2006, A second generation linkage map of European sea bass. IXth Int. Symp. for Genetics in Aquaculture, Montpellier, June 25-30, 2006.
von Schalburg, K.R., Rise, M.L., Cooper, G.A., Brown, G.D., Gibbs, R.A., Nelson, C.C., Davidson, W.S., Koop, B.F., 2005a, Fish and Chips: Various methodologies demonstrate utility of a 16,006-gene salmonid microarray. BMC Genomics 6, 126 CrossRef
von Schalburg, K.R., Rise, M.L., Brown, G.D., Davidson, W.S., Koop, B.F., 2005b, A comprehensive survey of the genes involved in maturation and development of the rainbow trout ovary. Biol. Reprod. 72, 687-699. CrossRef
von Schalburg, K.R., McCarthy, S.P., Rise, M.L., Hutson, J.C., Davidson, W.S., Koop, B.F., 2006, Expression of morphogenic genes in mature ovarian and testicular tissues: potential stem-cell niche markers and patterning factors. Mol. Reprod. Dev. 73, 142-152. CrossRef
Waldbieser, G.C., Bosworth, B.G., Nonneman, D.J., Wolters, W.R., 2001, A microsatellite-based genetic linkage map for channel catfish, Ictalurus punctatus. Genetics 158, 727-734.
Wang C.M., Lo L.C., Zhu Z.Y., Yue G.H., 2006, A genome scan for quantitative trait loci affecting growth-related traits in an F1 family of Asian seabass (Lates calcarifer). BMC Genomics 7, Art. No. 274.
Watanabe, T., Fujita, H., Yamasaki, K., Seki, S., Taniguchi, N., 2004, Preliminary study on linkage mapping based on microsatellite DNA and AFLP markers using homozygous clonal fish in Ayu (Plecoglossus altivelis). Mar. Biotech. 6, 327-334. CrossRef
Westenberg, M., Heinhuis, B., Zuidema, D., Vlak, J.A., 2005, SiRNA injection induces sequence-independent protection in Penaeus monodon against white spot syndrome virus. Virus Res. 114, 133-139. CrossRef
Whitaker, H.A., McAndrew, B.J., Taggart, J.B., 2006, Construction and characterisation of a BAC library for the European sea bass Dicentrarchus labrax. Anim. Genet. 37, 526. CrossRef
Whitehead, A., Crawford, D.L., 2006, Neutral and adaptive variation in gene expression. Proc. Natl Acad. Sci. USA 103, 5425-5430. CrossRef
Williams, T.D., Gensberg, K., Minchin, S.D., Chipman, J.K., 2003, A DNA expression array to detect toxic stress response in European flounder (Platichthys flesus). Aquat. Toxicol. 65, 141-157. CrossRef
Wilson, A.J., Ferguson, M.M., 2002, Molecular pedigree analysis in natural populations of fishes: approaches, applications, and practical considerations. Can. J. Fish. Aquat. Sci. 59, 1696-1707. CrossRef
Wilson, K., Li, Y., Whan, V., Lehnert, S., Byrne, K., Moore, S., Pongsomboon, S., Tassanakajon, A., Rosenberg, G., Ballment, E., Fayazi, Z., Swan, J., Kenway, M., Benzie, J., 2002, Genetic mapping of the black tiger shrimp Penaeus monodon. Aquaculture 204, 297-309. CrossRef
Woram, R.A., Gharbi, K., Sakamoto, T., Hoyheim, B., Holm, L.E., Naish, K., McGowan, C., Ferguson, M.M., Phillips, R.B., Stein, J., Guymard, R., Cairney, M., Taggart, J.B., Powell, R., Davidson, W.S., Danzmann, R.G., 2003, Comparative genome analysis of the primary sex-determining locus in salmonid fishes. Genome Res. 13, 272-280. CrossRef
Woram, R.A., McGowan, C., Stout, J.A., Gharbi, K., Ferguson, M.M., Hoyheim, B., Davidson, E.A., Davidson, W.S., Rexroad, C., Danzmann, R.G., 2004, A genetic linkage map for Arctic char (Salvelinus alpinus): evidence for higher recombination rates and segregation distortion in hybrid versus pure strain mapping parents. Genome 47, 304-315. CrossRef
Yazawa R,, Cooper G.A., Hunt P., Beetz-Sargent M., Robb A., Conrad M., McKinnel L., So S., Jantzen S., Phillips R.B., Davidson W.S., Koop B.F., 2007, Striking antigen recognition diversity in the Atlantic salmon T-cell receptor alpha/delta locus. Dev. Comp. Immunol. [doi: 10.1016/j.dci.2007.05.002]. CrossRef
Young, W.P., Wheeler, P.A., Coryell, V.H., Keim, P., Thorgaard, G.H., 1998, A detailed linkage map of rainbow trout produced using doubled haploids. Genetics 148, 839-850.
Yu, Z., Guo, X., 2003, Genetic linkage map of the Eastern oyster Crassostrea virginica Gmelin. Biol. Bull. 204, 327-338. CrossRef
Yu, Z., Guo, X., 2006, Identification and mapping of disease-resistance QTLs in the eastern oyster, Crassostrea virginica Gmelin. Aquaculture 254, 160-170. CrossRef
Zhou, Z., Bao, Z., Dong, Y., Wang, S., He, C., Liu, W., Wang, L., Zhu, F., 2006, AFLP linkage map of sea urchin constructed using an interspecific cross between Strongylocentrotus nudus (♀) and S. intermedius (♂). Aquaculture 259, 56-65. CrossRef
Zimmerman, A.M., Evenhuis, J.P., Thorgaard, G.H., Ristow, S.S., 2004, A single major chromosomal region controls natural killer cell-like activity in rainbow trout. Immunogenetics 55, 825-835.
Zimmerman, A.M., Wheeler, P.A., Ristow, S.S., Thorgaard, G.H., 2005, Composite interval mapping reveals three QTL associated with pyloric caeca number in rainbow trout, Oncorhynchus mykiss. Aquaculture 247, 85-95. CrossRef