INTRODUCTION
A healthy immune response is essential for control of tuberculosis (TB) infection. In the absence of adequate control, 10% of the 2 billion annual cases of TB infection progress to active disease [Reference Dye1, Reference Ferebee2]. Although the mechanisms are not fully understood, latent TB infection (LTBI) appears to be maintained by a complex interplay of immune responses that contain the bacteria while limiting pathology [Reference Ehlers3]. Cytokine signalling plays a critical role in orchestrating a coordinated protective response [Reference Cooper and Khader4]. IFN-γ secretion by CD4+ cells is considered the quintessential T helper 1 (Th1 type) or pro-inflammatory cytokine response associated with control of TB infection, while high levels of interleukin (IL)-4, IL-13 and other T helper 2 (Th2 type) cytokines, as well as expansion of regulatory cytokines, such as IL-10 and TGF-β, may be associated with progression of latent infection to active disease [Reference Hussain5, Reference Demissie6]. The recently characterized class of Th17 cells may also be important during reactivation [Reference Torrado and Cooper7].
A growing number of studies are exploring geographical variations in immunity to TB. Compared to counterparts in industrialized countries, individuals in the developing world exhibit important differences in immunological profiles that can affect response to TB antigens. For example, healthy HIV-negative Ethiopians have lower proportions and absolute numbers of naive CD4+ and CD8+ T cells, and correspondingly greater numbers of central and effector memory T cells compared to Dutch counterparts [Reference Tsegaye8]. Compared to UK infants, Malawian infants have a lower interferon-γ response to purified protein derivative (PPD) after bacillus Calmette-Guérin (BCG) vaccination [Reference Black9], and higher levels of Th2 and regulatory type cytokines IL-4, IL-13, and IL-10 [Reference Lalor10]. This developing world immune profile may reflect continuous exposure to environmental mycobacteria, helminths, and enteric bacteria, with important implications for explaining the diminished efficacy of BCG vaccines in populations where these exposures are endemic [Reference Rook, Dheda and Zumla11], as well as for the accuracy of delayed type hypersensitivity and T-cell based diagnostic tests [Reference Esmail, Barry and Wilkinson12], and immunogenicity of candidate TB vaccines in different populations [Reference Rook, Dheda and Zumla13].
In the developing world, Helicobacter pylori and helminth infections frequently co-exist with LTBI [Reference Perry, Hussain and Parsonnet14]. Typically acquired before the age of 5 years through crowded and unsanitary conditions, H. pylori actively infects about 80% of individuals living in the developing world [Reference Perry, de Martel, Parsonnet, Brachman and Brutyn15]. Colonization, which causes gastric inflammation with secretion of T-cell derived IFN-γ and other Th1 type cytokines [Reference D'Elios16] as well as a strong systemic antibody response, may persist asymptomatically for life. In an African cohort, we have previously reported that, compared to TB patients, latently infected household contacts who do not progress to TB within 2 years are more than three times as likely to be H. pylori seropositive [Reference Perry17]. Infecting over 2 billion people [Reference Hotez18], virtually all in the developing world, helminths are classically associated with Th2 type and humoral responses, including induction of IL-4, IL-13 and IL-5 with eosinophilia [Reference Maizels and Yazdanbakhsh19]. Recurrent throughout early life, helminth infections are well-known immune modulators, capable of polarizing responses to TB and other antigens [Reference Cooper20]. In controlled studies, treatment of helminth infection has been associated with phenotypic changes in the T-cell compartments [Reference Kassu21], as well as alterations in T-cell proliferative responses and in response to BCG vaccine [Reference Elias22]. In rodent models, concurrent helminth infection may also downregulate the inflammatory response to Helicobacter infection [Reference Fox23]. Both types of gut infection also invoke T-cell regulatory networks, such as via IL-10 secretion, which may be important in controlling local inflammation and maintaining immune homeostasis while permitting tolerance [Reference Erdman24–Reference Allen and Maizels26]. The disappearance of these gastrointestinal infections in the industrialized world has been associated with increased risk of Th-2 and T-reg modifying conditions such as asthma [Reference Maizels27, Reference Blaser, Chen and Reibman28] and autoimmune diseases, respectively [Reference Wills-Karp, Santeliz and Karp29]. Studies of immune response to TB infection in the setting of concurrent H. pylori and worm infection may help elucidate why some infected individuals can control TB infection whereas others cannot.
We previously reported that, in healthy Hispanics living in Northern California, H. pylori infection was associated with an enhancement of IFN-γ and other Th1-type cytokine responses to TB infection [Reference Perry17]. We now expand on this work in a population with high prevalence of both H. pylori and helminth infection.
METHODS
Population and study design
The study was cross-sectional in design. Between June 2008 and June 2011, 322 adult refugees (aged 18–55 years) undergoing routine health screening as part of the California refugee resettlement and health screening programme were recruited through the Santa Clara Valley TB Clinic and the San Francisco General Hospital Refugee Medical Clinic. To be enrolled in the study, refugees had to have come from a high TB incidence (>20/100 000 population [Reference Ricks30]) country (excluding North America, Australia, Western Europe and New Zealand), and have resided in the USA for <2 years. In addition to completing their regular clinic screening, enrollees agreed to complete a health interview, and provide blood (30 μ l) and three stool specimens to test for common infections. We excluded individuals who self-reported major chronic illnesses or immunocompromising conditions, antibiotic use within the previous 6 months; a history of treatment for TB or H. pylori; or recent or current (<3 months) prescription treatment for allergies, malaria, or intestinal parasites. We also excluded individuals who had clinical laboratory results outside of the laboratory's normal ranges for liver function, blood counts, T-cell subsets, C-reactive protein, or erythrocyte sedimentation rate; or who tested positive for current hepatitis B or C infection. Pregnant or lactating women were also excluded. We elicited history of BCG vaccination and interviewers recorded the presence or absence of a BCG scar. Clinical laboratory tests were conducted by Stanford Hospital and participating clinic laboratories.
Informed consent was obtained from all participants. The study was approved by the institutional review boards of Stanford University, the Santa Clara Valley Medical Centre, and the University of California, San Francisco.
Infection assessment
All individuals meeting initial health and clinical laboratory guidelines were classified for TB, H. pylori, and helminth infections. The following criteria were used to define eight possible infection strata, including a group with none of the target infections.
LTBI
TB infection was defined by results of the in-tube QuantiFERON-TB GOLD test (‘QFT’, Cellestis Ltd, Australia), which was conducted by study personnel following the manufacturer's recommendations, as described previously [Reference Perry31]. To be considered TB infected, an individual had to be positive by QFT (⩾0·35 IU/ml); individuals with IFN-γ production <0·35 ml/IU were considered uninfected. Individuals with indeterminate QFT results (<0·5 IU/ml mitogen reading) were excluded from the study.
H. pylori infection
Enzyme-linked immunosorbent assay (ELISA) was used to test for antibodies to high-molecular-weight proteins of H. pylori and to the CagA protein, as described previously [Reference Replogle32, Reference de Martel33]. Individuals considered H. pylori infected were either H. pylori or CagA positive, and individuals considered uninfected tested negative on both assays. Sera with equivocal results were considered indeterminate, and the subjects were excluded from the study.
Helminth infection
Helminth infection was ascertained by stool ova and parasite examination as well as by serology for Strongyloides (S. stercoralis), schistosomiasis, and cysticercosis using commercial ELISA kits (Scimedex, USA). To be considered helminth infected, subjects had to have at least one positive stool examination or a positive S. stercoralis antibody test. To be considered helminth uninfected, individuals had to have returned at least two stool samples and all samples needed to be negative for helminths. Additionally, to be classified as helminth-uninfected, serology must have been negative for strongyloides, cysticercosis and schistosomiasis. Individuals with isolated eosinophil counts (⩾500 cells/μl) or with schistosomiasis or cysticercosis positive IgG only were excluded from the study.
Multiple infections
Individuals meeting criteria for two or more infections simultaneously were additionally classified as H. pylori and LTBI, H. pylori and helminth, LTBI and helminth, or H. pylori, LTBI, and helminth infected.
No infections
Subjects meeting criteria simultaneously for absence of all three infections were classified as having none of the target infections.
Cytokine profiling studies
Excess plasma from the QFT assay, including plasma stimulated with the overlapping peptide pool ESAT-6, CFP-10, and TB 7.7, as well as plasma stimulated with the positive control, PHA, and unstimulated (saline) sample, were frozen at −20°C. After thawing, stimulated and unstimulated plasma samples were prepared for Luminex XMAP analysis using a customized human ‘Milliplex’ kit mixed according to manufacturer's instructions (Millipore, USA). Cytokines included in the customized kit were IFN-γ, IL-10, IP-10, IL-2, IL-5, IL-13, tumour necrosis factor (TNF)-α, and IL-17. Output was read on a Bio-Rad Luminex reader, expressed as pg/ml. The limits of detection for this standardized assay were 3·2 pg/ml and 10 000 pg/ml.
Statistical analysis
Statistical analysis was performed with SAS v. 9.2 (SAS Institute, USA). Cytokine output was log-transformed for analysis, with values below 1 coded as 1. To preserve negative values, the difference between a subject's antigen-stimulated and unstimulated well was computed as a log (antigen)-log(nil) well. This ‘signal-to-noise’ ratio normalizes each subject to his/her unstimulated well.
A generalized linear model (GLM) was used to characterize mean log-transformed cytokine levels in a full factorial model, accounting for each of the three infections, and their interactions. Interpretation of P values was based on four a priori comparisons using the ‘LTBI only group’ as the reference (Dunnett's test). These comparisons were: LTBI vs. no infections; LTBI vs. LTBI/H. pylori infected, LTBI vs. LTBI/helminth infected, and LTBI vs. LTBI/H. pylori/helminth infected.
Principal components analysis (PCA) [Reference Affifi and Clark34] was used to characterize the inter-correlation of cytokine responses within the population sample and to elicit clustering profiles. The first two components (eigenvalue >1) were selected for graphic representation. A multi-way contingency (log linear) analysis [Reference Agresti35] was used to fit the spatial distribution of cases and test (log likelihood ratio test) for inter-independence of the infections. Mean standardized component scores were compared among the eight possible infection strata using a least squares means test.
RESULTS
Results of infection assessment
Of 322 enrolled in the study, 227 (71%) met initial health and clinical laboratory screening criteria and were included in the co-infection assessment (Fig. 1). A total 303 (94%) had resided in the USA for <1 year. Of the 95 excluded, 49 (52%) were excluded due to self-reported health history, 17 (18%) because of incomplete specimen collection, and 29 (31%) due to abnormal clinical laboratory results. Of the 227 eligible for the infection assessment, 176 (84%) were successfully classified, and 51 (22%) who had equivocal test results for one or more of the chronic infections were excluded. About half (53%) of subjects enrolled during this time period (2008–2011) were from Afghanistan or the Middle East, 32% from Asia, 14% from Africa, and 4% from the Americas.
Of the 176 subjects classified for infection profile, 38 (22%) had LTBI as indicated by a positive QFT. LTBI+ and LTBI– subjects did not differ with respect to age, sex, or frequency of markers for hepatitis A, hepatitis B, or helminth infections (Table 1). Subjects with LTBI were somewhat less likely to have an observable BCG scar (P = 0·06), and were more likely to have antibody responses to H. pylori (P = 0·03). Helminth infections, 46/48 of which were diagnosed by positive S. stercoralis test, were of similar prevalence (32% and 26%) in LTBI+ and LTBI– groups (P = 0·50). Among the 38 subjects with LTBI, 28 (74%) had H. pylori and/or helminth infection as well.
LTBI, Latent tuberculosis infection [defined by QuantiFERON-TB GOLD (QFT) interferon-γ release assay]; BCG, bacillus Calmette-Guérin; TST, tuberculin skin test.
* 173/176 subjects had concurrent TSTs performed by their refugee clinic.
† See Methods section for infection classifications (HAV, hepatitis A virus antibody; HepB, hepatitis B virus antibody (two individuals missing results).
‡ Only two cases had positive ova and parasite examination (one A. lumbricoides, and one mixed T. trichiuria, S. sterocoralis and hookworm), and 46 were ascertained by S. stercoralis antibody test, of which five also had elevated eosinophil count.
Effect of H. pylori and helminth infection on IFN-γ responses measured by the QFT assay
Concurrent infection with H. pylori or H. pylori and helminths was associated with significant variation in IFN-γ responses to the QFT (Fig. 2). Compared to ten subjects with LTBI only (Fig. 2b), mean IFN-γ responses were 0·89 log (IU/ml) greater in 16 LTBI subjects with concurrent H. pylori infection, and 1·2 log (IU/ml) greater in nine LTBI subjects with both H. pylori and helminth infection. Overall, concurrent H. pylori infection was associated with a 0·8 log greater IFN-γ response to QFT antigens (P < 0·001) accounting for helminth status. As expected, 138 subjects without TB infection had significantly lower IFN-γ responses to QFT antigens regardless of co-infection (Fig. 2a). The IFN-γ difference associated with concurrent LTBI/H. pylori infection was unchanged when accounting for hepatitis A virus antibody response (P = 0·63).
Results of cytokine profiling studies
Compared to 138 individuals without LTBI, the 38 LTBI+ cases had significantly greater concentrations of the inflammatory cytokines IFN-γ, IL-2, and chemokine, IP-10, as well as significantly greater concentrations of IL-5, and IL-13 (Fig. 3). Levels of the regulatory cytokine IL-10 (P = 0·57), the inflammatory cytokine, TNF-α (P = 0·20), and IL17 (P = 0·10) were not significantly different between LTBI+ and LTBI– subjects (data not shown). Within the LTBI group, and adjusting for all possible interactions, concurrent infection with H. pylori (without helminths) was associated with significantly higher levels of IFN-γ (P = 0·03) compared to the ten subjects with isolated LTBI, while concurrent H. pylori and helminth infection was associated with higher levels of IFN-γ (P < 0·001), IL-2 (P = 0·005), IL-5 (P < 0·001), and IL-13 (P < 0·001), and a trend towards higher levels of TNF-α (P = 0·05). Compared to subjects with H. pylori/LTBI infection, subjects with all three infections had significantly greater levels of IL-5 and IL-13 (P < 0·01 in each case), while IFN-γ levels did not differ (P = 0·27). Levels of IP-10 and IL-10 did not vary with concurrent H. pylori or helminth infection.
H. pylori infection is associated with enhanced Th1-type response to TB infection, even in the setting of concurrent helminth infection
PCA (Table 2) elicited a mixed Th1/Th2-type population profile. The first component (‘mixed IFN-γ axis’) explained 45% variance and consisted of IFN-γ and cytokines correlated with IFN-γ in this population, including inflammatory markers IL-2, and IP-10, and non-inflammatory markers, IL-5 and IL-13. The second component explained an additional 18% of total variance and consisted of IL-10, a regulatory marker, and the inflammatory marker, TNF-α (r = 0·40). A third component, accounting for an additional 11% of variance, represented IL-17. This cytokine pattern did not vary appreciably when altering the mix of infections included in the PCA.
PC, Principal component; eigenvalue, unitized value of variation explained by each component.
* Pearson's correlation coefficient (for logged values).
† IL-5 and IL-13 were correlated at r = 0·77.
Of the 38 LTBI cases, 35 (92%) had an elevated mixed IFN-γ axis score, including 21 (60%) who were dominant on the first component (Fig. 4). Of those dominant on the mixed IFN-γ axis, 14 (67%) were also H. pylori infected (n = 10) or H. pylori infected with helminths (n = 4). In a log-linear model fitting the distribution of cases with respect to dominance on the IFN-γ axis (LR 5·14, P = 0·82), H. pylori was significantly associated with LTBI (P = 0·037) after controlling for isolated LTBI (P < 0·001) and an independent effect of helminth infection (P = 0·001). Compared to individuals with isolated LTBI and accounting for helminth infection, mixed IFN-γ axis scores were about 2·3-fold greater in subjects with concurrent H. pylori infection (P = 0·003), while second component scores were not significantly different (Fig. 5). In addition, subjects with triple infection had higher mixed IFN-γ axis scores than subjects with H. pylori/TB co-infection (P < 0·001). Thus, the frequency of concurrent H. pylori infection in those with LTBI, within a population where concurrent helminth infections were also relatively common, strongly influenced the overall pattern both qualitatively and quantitatively of cytokine responses to TB antigens.
DISCUSSION
The interaction of H. pylori, helminth, and M. tuberculosis infections provides an informative model for investigating the properties of immune homeostasis in the developing world, with important implications for vaccine and diagnostic research. In this geographically diverse group of healthy adults from high-incidence TB countries, isolated TB infection was comparatively rare, while mixed infection was common. We found that subjects infected with H. pylori infection had significantly higher IFN-γ and other Th1-type inflammatory responses to specific TB antigens, even in the presence of helminth infections. This finding complements our previous observations in a US Hispanic population, where cross-sectionally, H. pylori was also associated with dominant Th1-type cytokine responses to TB infection [Reference Perry17].
To our knowledge, this is the first epidemiological study attempting to look at a three-way interaction of these three developing world infections. In separate studies, helminths and H. pylori infection have been associated with immunosuppressive [Reference Elias, Akuffo and Britton36] and inflammatory responses [Reference Perry17] responses to TB antigens, respectively. However, in this mixed infection population, many individuals with higher IFN-γ responses to TB antigens also had higher levels of IL-13 and IL-5, as well as of the Th1 markers IL-2 and IP-10, and individuals with all three infections had accentuated Th1-type responses, while Th2-type responses did not differ. This ‘mixed Th1 + Th2’ signature in response to TB antigens has been previously reported in developing world populations [Reference Lalor10]. In these populations, it has been suggested that a helminth-primed Th-2 background or a Th1 response pre-boosted by environmental mycobacteria may help explain the variable geographical efficacy of BCG vaccines, particularly nearer the equator [Reference Lalor10–Reference Rook, Dheda and Zumla11, Reference Lalor37]. Such a finding may be due to specific host factors or to non-specific environmental factors that participate in regulation of immune responses to specific chronic infections. Although we used a rigorous set of algorithms to exclude concomitant medical conditions and to define the three infections, this does not exclude a background of other immune activators to which the population has been ‘primed’.
An IFN-γ driven Th1-type response is known to be essential (but not necessarily sufficient) for maintenance of latency [Reference Lin and Flynn38]. Although our PCA failed to elicit an orthogonal Th1/Th2 matrix, over half of healthy TB-infected individuals were dominant on an axis representing cytokines correlated with IFN-γ. The correlation of IL-5 and IL-13 with IFN-γ was not altered by the mix of infection profiles included in the PCA, and appears to depend on the interaction of LTBI and H. pylori infection, as well as independently on helminth infection. In addition, subjects with isolated LTBI had significantly lower IFN-γ correlated component scores than latently infected individuals with H. pylori or H. pylori and helminth infection. Among latently infected individuals with concurrent H. pylori infection, first component scores were more than twofold greater after accounting for helminth infection. In contrast with our previous report [Reference Perry17], HAV antibody response was not a significant predictor of IFN-γ responses in this more complex model. We hypothesize that H. pylori is one, if not an exclusive, marker for enteric infections of early life that heighten protective Th1-type responses to TB infection. In the setting of concurrent H. pylori/helminth infection, immunosuppressive Type 2 responses to TB antigens, such as IL-5 and IL-13, may also be heightened but without diminishing the magnitude of Type 1 pro-inflammatory responses. Such a profile may be controlled by more complex regulatory networks involved in tolerance to each infection than the simple Th1/Th2 dichotomy embraces [Reference Affifi and Clark34].
Our results are consistent with the view that the baseline response to TB antigens, including response to TB vaccines, is ‘primed’ by the host's microbial environment. Some have suggested that in ‘mixed Th1 + Th2’ type populations, a BCG (Th1 type) boost vaccine may not provide additional protection beyond that of natural environmental stimuli, and that manipulation of regulatory and Th2-type responses may be more critical [Reference Rook, Dheda and Zumla13]. If, as has been suggested for environmental mycobacteria [Reference Black39], H. pylori infection, uniquely or as a proxy for chronic enteric infections, represents a pre-existing Th1-type ‘boost,’ then response to IFN-γ based vaccines may be expected to vary with this marker. In this setting, the role of helminth-like infections is complex: in the absence of mixed Th1 + Th2-type infection, responses to TB antigens may appear to be depressed, while in the presence of mixed Th1 + Th2 infection, they may appear to be enhanced. These considerations argue for strong characterizations of prevalent infections in vaccine candidate populations.
Some important caveats about this study include its cross-sectional design and constraints on statistical power exacted by a full factorial analysis. Cross-sectional epidemiological studies cannot establish mechanisms, direction of effect, or reproducibility of results. Small cell sizes for some subgroups can result in spurious statistical results. Although we screened extensively for helminth infections by serology and ova and parasite examination, the overwhelming majority of individuals classified as helminth-infected met this definition by virtue of S. stercoralis IgG serology. This may reflect the fact that presumptive anti-helminthic treatment is now widely used in pre-departure US refugee programmes [Reference Garg40], although the standard regimen may be less effective against Strongyloides [41]. Although S. stercoralis IgG is thought to reflect active disease, serology does not distinguish active from past infection. In support of seropositive subjects harbouring living worms, subjects were not eligible for analysis if they reported any anti-helminthic treatment in the previous 3 months, and all subjects were from regions of the world where helminth infections are endemic. All subjects determined by their clinic to be seropositive for S. stercoralis were treated with ivermectin. In addition, responses to the stereotypic helminth cytokines, IL-5 and IL-13, were pronounced in those classified as helminth-infected. Similarly, elevated levels of TB antigen-induced IL-5 and IL-13 were observed in Malawi infants, a helminth-endemic region [Reference Lalor10]. For these reasons, it is probable that S. stercoralis antibody responses reflected current infection. Nonetheless, we cannot exclude the possibility that individuals classified as helminth-infected had past, as opposed to current, infection, in which case the study's findings reduce to concurrent H. pylori infection in a population with probable, recent exposure to helminths.
In addition, we defined LTBI according to responses to the QuantiFERON-TB GOLD, and the multiplex analysis used supernatant from the proprietary QFT kit. Although this added coherence and specificity to our analysis, many of the QFT negatives had positive tuberculin skin test (TST) results. On the other hand, because concordance of positive QFT with a positive TST was high (89%), the results of the PCA were not altered appreciably by substituting the TST for the QFT in the definition of LTBI [Reference Herrera42]. An important strength of the study was our algorithm-based approach to health and infection classification. While this approach resulted in the exclusion of many individuals, it also reduced immunological heterogeneity associated with other underlying illnesses or medications, and attempted to focus the analysis on individuals with healthy, or normative, responses to the three infections of interest. Although we cannot rule out misclassification bias, such error would tend to bias results towards no difference.
There is growing evidence that chronic gastrointestinal infections are important regulators of the inadequate immune responses associated with TB progression as well as with many emerging diseases in the developed world. We have observed that in a population with exposure to both Th1- and Th2-type modifying infections, H. pylori infection is associated with enhanced Th1-type responses to TB antigens, even in the setting of concurrent helminth infection. This effect may be due to the synergy of responses to Th1-modifying infections as well as to reciprocal regulatory pathways induced in populations with high burden of infectious diseases [Reference Cerf-Bensussan and Gaboriau-Routhiau43].
Acknowledgements
The authors thank the refugees who participated in this study, as well as Dr Gulshan Bhatia, Director of the Santa Clara Valley Tuberculosis and Refugee Clinic, and Dr Hali Hammer, Director of the San Francisco General Hospital Refugee Medical Clinic and their clinical staff for their invaluable assistance with recruitment for this study. The authors also thank the Stanford Immunology Centre for use of their facilities for multiplex cytokine studies, and IVD Research of Carlsbad, CA and SciMedex of Denville, New Jersey for donation of testing kits used in the study.
Declaration of Interest
This work was supported by the National Institutes of Health (NIH R01-04801, NIH K23-054443, NIH K23-AI091688-02). The funders played no role in the design, analysis or preparation of this manuscript.