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Acquisition of antimicrobial-resistant bacteria in the absence of antimicrobial exposure: A systematic review and meta-analysis

Published online by Cambridge University Press:  29 July 2019

Erika M. C. D’Agata*
Affiliation:
Infectious Disease Division, Warren Alpert Medical School of Brown University, Providence, Rhode Island
Sara F. Geffert
Affiliation:
Infectious Disease Division, Warren Alpert Medical School of Brown University, Providence, Rhode Island
Rebecca McTavish
Affiliation:
Cornerstone Research Group, Burlington, Canada
Florence Wilson
Affiliation:
Cornerstone Research Group, Burlington, Canada
Chris Cameron
Affiliation:
Cornerstone Research Group, Burlington, Canada
*
Author for correspondence: Erika M. C. D’Agata, Email: edagata@Lifespan.org

Abstract

Objective:

The main risk factor for acquisition of antimicrobial-resistant bacteria (ARB) is antimicrobial exposure, although acquisition can occur in their absence. The aim of this study was to quantify the proportion of patients who acquire ARB without antimicrobial exposure.

Study design:

We searched Medline, Embase, and the Cochrane library for publications between January 1, 2000, and July 24, 2017, to identify studies of ARB acquisition in endemic settings. Studies required collection of serial surveillance cultures with acquisition defined as a negative baseline culture and a subsequent positive culture for an ARB, including either multidrug-resistant gram-negative bacteria or antimicrobial-resistant enterococci. Intervention studies were excluded. For each study, the proportion of patients who acquired an ARB but were not exposed to antimicrobials during the study period was quantified.

Results:

A total of 4,233 citations were identified; 147 underwent full-text review. Of these, 10 studies met inclusion criteria; 7 studies were considered to be at low risk of bias; and 6 studies were conducted in the intensive care unit (ICU) setting. The overall summary estimate for the proportion of patients who were not exposed to antimicrobials among those who acquired an ARB was 16.6% (95% CI, 7.8%–31.8%; P < .001), ranging from 0% to 57.1%. We observed no heterogeneity in the ICU studies but high heterogeneity among the non-ICU studies.

Conclusion:

In most included studies, a subset of patients acquired an ARB but were not exposed to antimicrobials. Future studies need to address transmission dynamics of ARB acquisition in the absence of antimicrobials.

Type
Original Article
Copyright
© 2019 by The Society for Healthcare Epidemiology of America. All rights reserved. 

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References

Marston, HD, Dixon, DM, Knisely, JM, Palmore, TN, Fauci, AS. Antimicrobial resistance. JAMA 2016;316:11931204.CrossRefGoogle ScholarPubMed
Santiago-Rodriguez, TM, Fornaciari, G, Luciani, S, et al. gut microbiome and putative resistome of Inca and Italian nobility mummies. Genes (Basel) 2017;8:pii: E310. doi: 10.3390/genes8110310.CrossRefGoogle ScholarPubMed
Santiago-Rodriguez, TM, Fornaciari, G, Luciani, S, et al. Gut microbiome of an 11th century A.D. pre-Columbian Andean mummy. PLoS One 2015;10:e0138135.CrossRefGoogle Scholar
Pawlowski, AC, Wang, W, Koteva, K, et al. A diverse intrinsic antibiotic resistome from a cave bacterium. Nat Commun 2016;7:13803.CrossRefGoogle ScholarPubMed
D’Agata, EMC, Varu, A, Geffert, SF, et al. Acquisition of multidrug-resistant organisms in the absence of antimicrobials. Clin Infect Dis 2018;67:14371440.CrossRefGoogle ScholarPubMed
Moher, D, Shamseer, L, Clarke, M, et al. Preferred reporting items for systematic review and meta-analysis protocols (PRISMA-P) 2015 statement. Syst Rev 2015;4:19.CrossRefGoogle ScholarPubMed
McGowan, J, Sampson, M, Salzwedel, DM, et al. PRESS Peer Review of Electronic Search Strategies: 2015 guideline statement. J Clin Epidemiol 2016;75:4046.CrossRefGoogle ScholarPubMed
Embase Emtree database. Elsevier website. https://www.elsevier.com/solutions/embase-biomedical-research. Updated 2019. Accessed July 19, 2017.Google Scholar
Hayden, JA, van der Windt, DA, Cartwright, JL, Cote, P, Bombardier, C. Assessing bias in studies of prognostic factors. Ann Intern Med 2013;158:280286.CrossRefGoogle ScholarPubMed
Borenstein, M, Hedges, L, Higgins, J, Rothstein, H. Comprehensive meta-analysis version 3.0 (computer software). Englewood, NJ: Biostat; 2014.Google Scholar
Higgins, J, Green, S, eds. Cochrane handbook for systematic reviews of interventions version 5.1.0. London: The Cochrane Collaboration; updated March 2011.Google Scholar
Arvaniti, K, Lathyris, D, Ruimy, R, et al. The importance of colonization pressure in multiresistant Acinetobacter baumannii acquisition in a Greek intensive care unit. Crit Care 2012;16:R102.CrossRefGoogle Scholar
Debby, B D, Ganor, O, Yasmin, M, et al. Epidemiology of carbapenem-resistant Klebsiella pneumoniae colonization in an intensive care unit. Eur J Clin Microbiol Infect Dis 2012;31:18111817.CrossRefGoogle Scholar
Ma, X, Wu, Y, Li, L, et al. First multicenter study on multidrug resistant bacteria carriage in Chinese ICUs. BMC Infect Dis 2015;15(358):110.CrossRefGoogle ScholarPubMed
Munoz-Price, LS, Rosa, R, Castro, JG, et al. Evaluating the impact of antibiotic exposures as time-dependent variables on the acquisition of carbapenem-resistant Acinetobacter baumannii. Crit Care Med 2016;44:e949e956.CrossRefGoogle ScholarPubMed
Repesse, X, Artiguenav, M, Paktoris, P, et al. Epidemiology of extended-spectrum beta-lactamase-producing Enterobacteriaceae in an intensive care unit with no single rooms. Ann Intensive Care 2017;7:19.CrossRefGoogle Scholar
Rodriguez, BJ, Ramirez, E, Muniain, MA, et al. Colonization by high-level aminoglycoside-resistant enterococci in intensive care unit patients: epidemiology and clinical relevance. J Hosp Infect 2005;60:353359.CrossRefGoogle Scholar
Cavalcante Rde, S, Canet, P, Fortaleza, CM, et al. Risk factors for the acquisition of imipenem-resistant Acinetobacter baumannii in a burn unit: an appraisal of the effect of colonization pressure. Scand J Infect Dis 2014;46:593598.CrossRefGoogle Scholar
Fisch, J, Lansing, B, Wang, L, et al. New acquisition of antibiotic-resistant organisms in skilled nursing facilities. J Clin Microbiol 2012;50:16981703.CrossRefGoogle ScholarPubMed
O’Fallon, E, Kandel, R, Schreiber, R, et al. Acquisition of multidrug-resistant gram-negative bacteria: incidence and risk factors within a long-term care population. Infect Control Hosp Epidemiol 2010;31:11481153.CrossRefGoogle ScholarPubMed
Pasricha, J, Koessler, T, Harbarth, S, et al. Carriage of extended-spectrum beta-lactamase-producing enterobacteriacae among internal medicine patients in Switzerland. Antimicrob Resist Infect Control 2013;2:17.CrossRefGoogle ScholarPubMed
Pamer, EG. Resurrecting the intestinal microbiota to combat antibiotic-resistant bacteria. Science 2016;352:535538.CrossRefGoogle Scholar
Buffie, CG, Pamer, EG. Microbiota-mediated colonization resistance against intestinal pathogens. Nature 2013;13:790801.Google ScholarPubMed
Becattini, S, Taur, Y, Pamer, EG. Antibiotic-induced changes in the intestinal microbiota and disease. Trends Mol Med 2016;22:458–78.CrossRefGoogle ScholarPubMed
Ticinesi, A, Milani, C, Lauretani, F, et al. Gut microbiota composition is associated with polypharmacy in elderly hospitalized patients Sci Rep 2017;7:11102.CrossRefGoogle ScholarPubMed
Araos, R, D’Agata, EMC. The human microbiome and infection prevention. Infect Control Hosp Epidemiol 2019. doi: 10.1017/ice.2019.28.CrossRefGoogle Scholar
Le Bastard, Q, Al-Ghalith, GA, Grégoire, M, et al. Systematic review: human gut dysbiosis induced by non-antibiotic prescription medications. Aliment Pharmacol Ther 2018;47:332345.CrossRefGoogle ScholarPubMed
Cho, I, Blaser, MJ. The human microbiome: at the interface of health and disease. Nat Rev Genet 2012;13:260270.CrossRefGoogle Scholar
Yatsunenko, T, Rey, FE, Manary, MJ, et al. Human gut microbiome viewed across age and geography. Nature 2012;486:222227.CrossRefGoogle ScholarPubMed
van Schaik, W. The human gut resistome. Phil Trans R Soc B 2015;370:20140087.CrossRefGoogle ScholarPubMed
Chandan, P, Bengtsson-Palme, J, Kristiansson, E, Joakim Larsson, DG. The structure and diversity of human, animal and environmental resistomes. Microbiome 2016;4:54.Google Scholar
Mills, EJ, Jansen, JP, Kanters, S. Heterogeneity in meta-analysis of FDG-PET studies to diagnose lung cancer. JAMA 2015;313:419.CrossRefGoogle ScholarPubMed
Dethlefsen, L, Huse, S, Sogin, ML, Relman, DA. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Genet 2008;11:e1000255.Google Scholar
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