Hostname: page-component-cd9895bd7-gxg78 Total loading time: 0 Render date: 2024-12-27T07:13:20.891Z Has data issue: false hasContentIssue false

Prebiotic studies on the interaction of zirconia nanoparticles and ribose nucleotides and their role in chemical evolution

Published online by Cambridge University Press:  26 February 2021

Avnish Kumar Arora
Affiliation:
Department of Chemistry, Vardhman College Bijnor246701 (U.P.), India
Pankaj Kumar*
Affiliation:
Department of Applied Sciences, School of Engineering, University of Petroleum and Energy Studies, Dehradun, Uttarakhand248007, India
*
Author for correspondence: Pankaj Kumar, E-mail: pkumar@ddn.upes.ac.in

Abstract

Studies on the interaction of biomolecules with inorganic compounds, mainly mineral surfaces, are of great concern in identifying their role in chemical evolution and origins of life. Metal oxides are the major constituents of earth and earth-like planets. Hence, studies on the interaction of biomolecules with these minerals are the point of concern for the study of the emergence of life on different planets. Zirconium oxide is one of the metal oxides present in earth's crust as it is a part of several types of rocks found in sandy areas such as beaches and riverbeds, e.g. pebbles of baddeleyite. Different metal oxides have been studied for their role in chemical evolution but no studies have been reported about the role of zirconium oxide in chemical evolution and origins of life. Therefore, studies were carried out on the interaction of ribonucleic acid constituents, 5′-CMP (cytidine monophosphate), 5′-UMP (uridine monophosphate), 5′-GMP (guanosine monophosphate) and 5′-AMP (adenosine monophosphate), with zirconium oxide. Synthesized zirconium oxide particles were characterized by using vibrating sample magnetometer, X-Ray Diffraction (XRD), scanning electron microscopy (SEM) and transmission electron microscopy. Zirconia particles were in the nanometre range, from 14 to 27 nm. The interaction of zirconium oxide with ribonucleic acid constituents was performed in the concentration range of 5 × 10−5–300 × 10−5 M. Interaction studies were carried out in three mediums; acidic (pH 4.0), neutral (pH 7.0) and basic (pH 9.0). At neutral pH, maximum interaction was observed. The interaction of zirconium oxide with 5′-UMP was 49.45% and with 5′-CMP 67.98%, while with others it was in between. Interaction studies were Langmurian in nature. Xm and KL values were calculated. Infrared spectral studies of ribonucleotides, metal oxide and ribonucleotide–metal oxide adducts were carried out to find out the interactive sites. It was observed that the nitrogen base and phosphate moiety of ribonucleotides interact with the positive charge surface of metal oxide. SEM was also carried out to study the adsorption. The results of the present study favour the important role of zirconium oxide in concentrating the organic molecules from their dilute aqueous solutions in primeval seas.

Type
Research Article
Copyright
Copyright © The Author(s), 2021. Published by Cambridge University Press

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Ali, FM, Reshad, R, Machhindra, S, Bhalerao, V and Goud, V (2018) Catalytic cracking of waste cooking oil for biofuel production using zirconium oxide catalyst. Industrial Crops and Products 118, 282289.Google Scholar
Arora, AK and Kamaluddin, (2007) Interaction of ribose nucleotides with zinc oxide and relevance in chemical evolution, Colloids and Surfaces A: Physicochemical and Engineering Aspects 298, 186191.CrossRefGoogle Scholar
Arora, AK and Kamaluddin, (2009) Role of metal oxides in chemical evolution: interaction of ribose nucleotides with alumina, Astrobiology 9, 165171.CrossRefGoogle ScholarPubMed
Arora, AK, Tomar, V, Arya, A and Venkateswararao, KT (2006) Haematite–water system on Mars and its possible role in chemical evolution. International Journal of Astrobiology 2, 139143.Google Scholar
Arvand, M, Elyan, S and Ardaki, MS (2019) Facile one-pot electrochemical synthesis of zirconium oxide decorated poly (3,4-ethylenedioxythiophene) nanocomposite for the electrocatalytic oxidation and detection of progesterone. Sensors and Actuators B: Chemical, 281, 157167.CrossRefGoogle Scholar
Atalay, H, Celik, A and Ayaz, F (2018) Investigation of genotoxic and apoptotics effects of zirconium oxide nanoparticles (20 nm) on L929 mouse fibroblast cell line. Chemico-Biological Interactions 296, 98104.CrossRefGoogle Scholar
Bhushan, B, Shanker, U and Kamaluddin, (2011) Adsorption of ribose nucleotides on manganese oxides with varied Mn/O ratio: implications for chemical evolution. Origins of Life and Evolution of Biospheres 41, 469482.CrossRefGoogle ScholarPubMed
Brack, A (2013) Clay minerals and origins of life. Development in Clay Science 5, 507521.CrossRefGoogle Scholar
Cains-Smith, AG (1982) Genetic Takeover. Cambridge: Cambridge University Press. 133p.Google Scholar
Choy, JH, Choi, SJ, Oh, JM and Park, T (2007) Clay minerals and layered double hydroxides for novel biological applications. Applied Clay Science 36, 122132.CrossRefGoogle Scholar
Christian, J, Pichler, M, Gu, D, Joshi, H and Schuth, F (2018) Influence of preparation method and doping of zirconium oxide onto the material characteristics and catalytic activity for the HDO reaction in nickel on zirconium oxide catalysts. Journal of Catalysis 365, 367375.Google Scholar
Cleaves, HJ, Jonsson, CM, Jonsson, CL, Sverjensky, DA and Hazen, RM (2010) Adsorption of nucleic acid components on rutile (TiO2), surf. Astrobiology 10, 311323.CrossRefGoogle Scholar
Cleaves, HJ, Scott, AM, Hill, FC, Leszczynski, J, Sahai, N and Hazen, R (2012) Mineral–organic interfacial processes: potential roles in the origins of life. Chemical Society Reviews 41, 55025525.CrossRefGoogle ScholarPubMed
Feuillie, C, Sverjensky, DA and Hazen, RM (2015) Attachment of ribonucleotides on α-alumina as a function of pH, ionic strength, and surface loading. Langmuir 31, 240248.CrossRefGoogle ScholarPubMed
Hou, Y, Wu, P, Huang, Z, Ruan, B, Liu, P and Zhu, N (2014) Successful intercalation of DNA into CTAB-modified clay minerals for gene protection. Journal of Materials Science 49, 72737281.CrossRefGoogle Scholar
Iqbal, MdA, Sharma, R and Kamaluddin, (2016) Surface interaction of ribonucleic acid constituents with spinel ferrite nanoparticles: a prebiotic chemistry experiment, RSC Advances 6, 6857468583.CrossRefGoogle Scholar
Kamaluddin, Nath M and Sharma, A (1994a) Role of transition metal ferrocyanides (II) in chemical evolution, adsorption of ribose and 2′-deoxyribose 5′-nucleotides on metal ferrocyanides. Origins of Life and Evolution of Biospheres 24, 469477.CrossRefGoogle Scholar
Kamaluddin, , Nath, M and Sharma, A (1994b) Role of metal ferrocyanides in chemical evolution. Origins of Life and Evolution of Biospheres, 24, 469477.CrossRefGoogle Scholar
Kexuel, L, Thomas, A, Liu, J, Hulme, H, Garner, A, Sergio, MP and Grovenor, LP (2019) 3D-characterization of deuterium distributions in zirconium oxide scale using high-resolution SIMS. Applied Surface Science 464, 311320.Google Scholar
Kosmulski, M (2001) Chemical Properties of Material Surfaces. New York: Marcel Dekker.Inc.Google Scholar
Li, L, Wang, Z, Wang, T, Gong, J and Qi, B, (2019) Highly sensitive non-enzymatic MP sensor based on electrospun copper oxide-doped zirconium oxide composite microfibers. Journal of Electroanalytical Chemistry 846, 113171.CrossRefGoogle Scholar
Patel, US, Patel, KH, Chauhan, KV, Chawla, AK and Rawal, SK (2016) Investigation of various properties for zirconium oxide films synthesized by sputtering. Procedia Technology 23, 336343.CrossRefGoogle Scholar
Ponnamperuma, C, Shimoyama, A and Friebele, E (1982) Clay and the origin of life. Origins of Life 12, 940.CrossRefGoogle ScholarPubMed
Rachna, S, Kumar, A, Asif Iqubal, Md and Kamaluddin, (2015). Role of double metal cyanides in chemical evolution: interaction of ribose nucleotides with metal hexacyanocobaltate(III). Journal of Astrobiology & Outreach 03, 138. doi 10.4172/2332-2519.1000138.Google Scholar
Shanker, U, Bhushan, B, Bhattacharjee, G and Kamaluddin, (2012) Oligomerization of glycine and alanine catalyzed by iron oxides: implications for prebiotic chemistry, Origins of Life and Evolution of the Biosphere: The Journal of the International Society for the Study of the Origin of Life 42:3145.CrossRefGoogle ScholarPubMed
Tewari, BB (2017) Role of metal oxides in chemical evolution: Interaction of valine and glycine with aluminum, iron and zinc oxides. XVIIIth International Conference on Origin of Life, July 16–21.Google Scholar
The Elements zirconium (2008) Susan watt, Marshall Cavendish, Benchmark, New York, P11.Google Scholar
Waghmar, MA, Pawar, KS, Pathan, HM and Ubale, AU (2017) Influence of annealing temperature on the structural and optical properties of nanocrystalline zirconium oxide. Materials Science in Semiconductor Processing 72, 122127.CrossRefGoogle Scholar
Wang, X, Pan, S, Zhang, M, Qi, J, Sun, X, Gu, C, Wang, L and Li, J (2019) Modified hydrous zirconium oxide/PAN nanofibers for efficient defluoridation from groundwater. Science of the Total Environment 685, 401409.CrossRefGoogle ScholarPubMed