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Impacts of long-term fertilization on the soil microbial communities in double-cropped paddy fields

Published online by Cambridge University Press:  16 October 2018

H. M. Tang*
Affiliation:
Institute of Soil and Fertilizer, Hunan Academy of Agricultural Sciences, Changsha 410125, China
Y. L. Xu
Affiliation:
Hunan Biological and Electromechanical Polytechnic, Changsha 410127, China
X. P. Xiao
Affiliation:
Institute of Soil and Fertilizer, Hunan Academy of Agricultural Sciences, Changsha 410125, China
C. Li
Affiliation:
Institute of Soil and Fertilizer, Hunan Academy of Agricultural Sciences, Changsha 410125, China
W. Y. Li
Affiliation:
Institute of Soil and Fertilizer, Hunan Academy of Agricultural Sciences, Changsha 410125, China
K. K. Cheng
Affiliation:
Institute of Soil and Fertilizer, Hunan Academy of Agricultural Sciences, Changsha 410125, China
X. C. Pan
Affiliation:
Institute of Soil and Fertilizer, Hunan Academy of Agricultural Sciences, Changsha 410125, China
G. Sun
Affiliation:
Institute of Soil and Fertilizer, Hunan Academy of Agricultural Sciences, Changsha 410125, China
*
Author for correspondence: H. M. Tang, E-mail: tanghaiming66@163.com

Abstract

The response of soil microbial communities to soil quality changes is a sensitive indicator of soil ecosystem health. The current work investigated soil microbial communities under different fertilization treatments in a 31-year experiment using the phospholipid fatty acid (PLFA) profile method. The experiment consisted of five fertilization treatments: without fertilizer input (CK), chemical fertilizer alone (MF), rice (Oryza sativa L.) straw residue and chemical fertilizer (RF), low manure rate and chemical fertilizer (LOM), and high manure rate and chemical fertilizer (HOM). Soil samples were collected from the plough layer and results indicated that the content of PLFAs were increased in all fertilization treatments compared with the control. The iC15:0 fatty acids increased significantly in MF treatment but decreased in RF, LOM and HOM, while aC15:0 fatty acids increased in these three treatments. Principal component (PC) analysis was conducted to determine factors defining soil microbial community structure using the 21 PLFAs detected in all treatments: the first and second PCs explained 89.8% of the total variance. All unsaturated and cyclopropyl PLFAs except C12:0 and C15:0 were highly weighted on the first PC. The first and second PC also explained 87.1% of the total variance among all fertilization treatments. There was no difference in the first and second PC between RF and HOM treatments. The results indicated that long-term combined application of straw residue or organic manure with chemical fertilizer practices improved soil microbial community structure more than the mineral fertilizer treatment in double-cropped paddy fields in Southern China.

Type
Crops and Soils Research Paper
Copyright
Copyright © Cambridge University Press 2018 

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References

Aciego Pietri, JC and Brookes, PC (2009) Substrate inputs and pH as factors controlling microbial biomass, activity and community structure in an arable soil. Soil Biology and Biochemistry 41, 13961405.Google Scholar
Ai, C, Liang, GQ, Sun, JW, Wang, XB and Zhou, W (2012) Responses of extracellular enzyme activities and microbial community in both the rhizosphere and bulksoil to long-term fertilization practices in a fluvo-aquic soil. Geoderma 173–174, 330338.Google Scholar
Bossio, DA, Scow, KM, Gunapala, N and Graham, KJ (1998) Determinants of soil microbial communities: effects of agricultural management, season, and soil type on phospholipid fatty acid profiles. Microbial Ecology 36, 112.Google Scholar
Bowles, TM, Acosta-Martinez, V, Calderon, F and Jackson, LE (2014) Soil enzyme activities, microbial communities, and carbon and nitrogen availability in organic agroecosystems across an intensively-managed agricultural landscape. Soil Biology and Biochemistry 68, 252262.Google Scholar
Calderón, FJ, Jackson, LE, Scow, KM and Rolston, DE (2001) Short-term dynamics of nitrogen, microbial activity, and phospholipid fatty acids after tillage. Soil Science Society of America Journal 65, 118126.Google Scholar
Chodak, M and Niklińska, M (2010) Effect of texture and tree species on microbial properties of mine soils. Applied Soil Ecology 46, 268275.Google Scholar
Clegg, CD (2006) Impact of cattle grazing and inorganic fertilizer additions to managed grasslands on the microbial community composition of soils. Applied Soil Ecology 31, 7382.Google Scholar
Demoling, F, Nilsson, LO and Bååth, E (2008) Bacterial and fungal response to nitrogen fertilization in three coniferous forest soils. Soil Biology and Biochemistry 40, 370379.Google Scholar
De Vries, FT, Hoffland, E, van Eekeren, N, Brussaard, L and Bloem, J (2006) Fungal/bacterial ratios in grasslands with contrasting nitrogen management. Soil Biology and Biochemistry 38, 20922103.Google Scholar
Dong, WY, Zhang, XY, Dai, XQ, Fu, XL, Yang, FT, Liu, XY, Sun, XM, Wen, XF and Schaeffer, S (2014) Changes in soil microbial community composition in response to fertilization of paddy soils in subtropical China. Applied Soil Ecology 84, 140147.Google Scholar
Frostegård, A and Bååth, E (1996) The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil. Biology and Fertility of Soils 22, 5965.Google Scholar
García-Orenes, F, Morugan-Coronado, A, Zornoza, R and Scow, K (2013) Changes in soil microbial community structure influenced by agricultural management practices in a Mediterranean agro-ecosystem. PLoS ONE 8, e80522.Google Scholar
Guckert, JB, Hood, MA and White, DC (1986) Phospholipid, ester-linked fatty acid profile changes during nutrient deprivation of Vibrio cholerae: increases in the trans/cis ratio and proportions of cyclopropyl fatty acids. Applied and Environmental Microbiology 52, 794801.Google Scholar
Hao, XH, Liu, SL, Wu, JS, Hu, RG, Tong, CL and Su, YY (2008) Effect of long-term application of inorganic fertilizer and organic amendments on soil organic matter and microbial biomass in three subtropical paddy soils. Nutrient Cycling in Agroecosystems 81, 1724.Google Scholar
Herman, DJ, Firestone, MK, Nuccio, E and Hodge, A (2012) Interactions between an arbuscular mycorrhizal fungus and a soil microbial community mediating litter decomposition. FEMS Microbiology Ecology 80, 236247.Google Scholar
Hill, GT, Mitkowski, NA, Aldrich-Wolfe, L, Emele, LR, Jurkonie, DD, Ficke, A, Maldonado-Ramirez, S, Lynch, ST and Nelson, EB (2000) Methods for assessing the composition and diversity of soil microbial communities. Applied Soil Ecology 15, 2536.Google Scholar
Hu, XJ, Liu, JJ, Wei, D, Zhu, P, Cui, XA, Zhou, BK, Chen, XL, Jin, J, Liu, XB and Wang, GH (2017) Effects of over 30-year of different fertilization regimes on fungal community compositions in the black soils of northeast China. Agriculture, Ecosystems and Environment 248, 113122.Google Scholar
Islam, MR, Chauhan, PS, Kim, Y, Kim, M and Sa, T (2011) Community level functional diversity and enzyme activities in paddy soils under different long-term fertilizer management practices. Biology and Fertility of Soils 47, 599604.Google Scholar
Kieft, T, Ringelberg, D and White, D (1994) Changes in ester-linked phospholipid fatty acid profiles of subsurface bacteria during starvation and desiccation in a porous medium. Applied and Environmental Microbiology 60, 32923299.Google Scholar
Kong, XB, Zhang, FR, Wei, Q, Xu, Y and Hui, JG (2006) Influence of land use change on soil nutrients in an intensive agricultural region of North China. Soil and Tillage Research 88, 8594.Google Scholar
Kourtev, PS, Ehrenfeld, JG and Häggblom, MH (2002) Exotic plant species alter the microbial community structure and function in the soil. Ecology 83, 31523166.Google Scholar
Larkin, RP, Honeycutt, CW and Griffin, TS (2006) Effect of swine and dairy manure amendments on microbial communities in three soils as influenced by environmental conditions. Biology and Fertility of Soils 43, 5161.Google Scholar
Li, J, Cooper, JM, Lin, ZA, Li, YT, Yang, XD and Zhao, BQ (2015) Soil microbial community structure and function are significantly affected by long-term organic and mineral fertilization regimes in the North China Plain. Applied Soil Ecology 96, 7587.Google Scholar
Moche, M, Gutknecht, J, Schulz, E, Langer, U and Rinklebe, J (2015) Monthly dynamics of microbial community structure and their controlling factors in three floodplain soils. Soil Biology and Biochemistry 90, 169178.Google Scholar
Olsen, SR and Sommers, LE (1982) Phosphorus. In Page, AL, Miller, RH and Keeney, DR (eds), Methods of Soil Analysis. Part 2. Chemical and Microbiological Properties, 2nd Edn. Madison, WI, USA: American Society of Agronomy and Soil Science of America, pp. 403430.Google Scholar
Rinnan, R, Michelsen, A and Jonasson, S (2008) Effects of litter addition and warming on soil carbon, nutrient pools and microbial communities in a subarctic heath ecosystem. Applied Soil Ecology 39, 271281.Google Scholar
Schutter, ME and Dick, RP (2000) Comparison of fatty acid methyl ester (FAME) methods for characterizing microbial communities. Soil Science Society of America Journal 64, 16591668.Google Scholar
Strickland, MS and Rousk, J (2010) Considering fungal: bacterial dominance in soils-methods, controls, and ecosystem implications. Soil Biology and Biochemistry 42, 13851395.Google Scholar
Sun, R, Dsouza, M, Gilbert, JA, Guo, X, Wang, D, Guo, Z, Ni, Y and Chu, H (2016) Fungal community composition in soils subjected to long-term chemical fertilization is most influenced by the type of organic matter. Environmental Microbiology 18, 51375150.Google Scholar
Tang, HM, Xiao, XP, Wang, K, Li, WY, Liu, J and Sun, JM (2016) Methane and nitrous oxide emissions as affected by long-term fertilizer management from double-cropping paddy fields in Southern China. Journal of Agricultural Science, Cambridge 154, 13781391.Google Scholar
Tian, J, Lou, YL, Gao, Y, Fang, HJ, Liu, ST, Xu, MG, Blagodatskaya, E and Kuzyakov, Y (2017) Response of soil organic matter fractions and composition of microbial community to long-term organic and mineral fertilization. Biology and Fertility of Soils 53, 523532.Google Scholar
Vestal, JR and White, DC (1989) Lipid analysis in microbial ecology: quantitative approaches to the study of microbial communities. Bioscience 39, 535541.Google Scholar
Wang, H, Yang, JP, Yang, SH, Yang, ZC and Lv, YM (2014) Effect of a 10 °C-elevated temperature under different water contents on the microbial community in a tea orchard soil. European Journal of Soil Biology 62, 113120.Google Scholar
White, DC, Davis, WM, Nickels, JS, King, JD and Bobbie, RJ (1979) Determination of the sedimentary microbial biomass by extractible lipid phosphate. Oecologia 40, 5162.Google Scholar
Wieland, G, Neumann, R and Backhaus, H (2001) Variation of microbial communities in soil, rhizosphere, and rhizoplane in response to crop species, soil type, and crop development. Applied and Environmental Microbiology 67, 58495854.Google Scholar
Williams, A, Börjesson, G and Hedlund, K (2013) The effects of 55 years of different inorganic fertiliser regimes on soil properties and microbial community composition. Soil Biology and Biochemistry 67, 4146.Google Scholar
Yao, H, He, Z, Wilson, MJ and Campbell, CD (2000) Microbial biomass and community structure in a sequence of soils with increasing fertility and changing land use. Microbial Ecology 40, 223237.Google Scholar
Yevdokimov, IV, Gattinger, A, Buegger, F, Schloter, M and Munch, JC (2012) Changes in the structure and activity of a soil microbial community caused by inorganic nitrogen fertilization. Microbiology (Reading, England) 81, 743749.Google Scholar
Yu, WT, Bi, ML, Xu, YG, Zhou, H, Ma, Q and Jiang, CM (2013) Microbial biomass and community composition in a Luvisol soil as influenced by long-term land use and fertilization. Catena 107, 8995.Google Scholar
Zadoks, JC, Chang, TT and Konzak, CF (1974) A decimal code for the growth stages of cereals. Weed Research 14, 415421.Google Scholar
Zhang, H, Ding, W, He, X, Yu, H, Fan, J and Liu, D (2014) Influence of 20-year organic and inorganic fertilization on organic carbon accumulation and microbial community structure of aggregates in an intensively cultivated sandy loam soil. PLoS ONE 9, e92733.Google Scholar
Zhang, B, Gao, Q, Xu, S, Ma, L and Tian, C (2016) Long-term effect of residue return and fertilization on microbial biomass and community composition of a clay loam soil. Journal of Agricultural Science, Cambridge 154, 10511061.Google Scholar
Zhong, W, Gu, T, Wang, W, Zhang, B, Lin, X, Huang, Q and Shen, W (2010) The effects of mineral fertilizer and organic manure on soil microbial community and diversity. Plant and Soil 326, 511522.Google Scholar
Zhou, J, Jiang, X, Zhou, B, Zhao, B, Ma, M, Guan, D, Li, J, Chen, S, Cao, F, Shen, D and Qin, J (2016) Thirty four years of nitrogen fertilization decreases fungal diversity and alters fungal community composition in black soil in northeast China. Soil Biology and Biochemistry 95, 135143.Google Scholar