Hostname: page-component-cd9895bd7-dzt6s Total loading time: 0 Render date: 2024-12-28T00:22:49.915Z Has data issue: false hasContentIssue false

A Pólya urn model and the coalescent

Published online by Cambridge University Press:  14 July 2016

Gudrun Trieb*
Affiliation:
Johannes-Gutenberg-Universität, Mainz
*
Postal address: Fachbereich Mathematik, Johannes-Gutenberg-Universität, DW-6500 Mainz, Germany.

Abstract

In recent papers by Hoppe and Donnelly it has been shown that a Pólya urn model generating the Ewens sampling formula (population genetics) parallels a construction of Kingman using a Poisson–Dirichlet ‘paintbox'. Even the jump chain of Kingman's n-coalescent can be constructed using the urn. The properties of a certain process based on the coalescent also are derived. This process was introduced by Hoppe.

Type
Research Papers
Copyright
Copyright © Applied Probability Trust 1992 

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

[1]Donnelly, P. J. (1986) Partition structures, Pólya urns, the Ewens sampling formula and the ages of alleles. Theoret. Popn. Biol. 30, 271288.Google Scholar
[2]Donnelly, P. J. and Tavare, S. (1986) The ages of alleles and a coalescent. Adv. Appl. Prob. 18, 119.Google Scholar
[3]Donnelly, P. J. and Tavaré, S. (1987) The population genealogy of the infinitely-many neutral alleles model. J. Math. Biol. 25, 381391.Google Scholar
[4]Donnelly, P. J. and Tavaré, S. (1987) A genealogical description of the infinitely-many neutral alleles model. In Stochastic Methods in Biology, ed. Kimura, M., Kallianpur, C. and Hida, T., Lecture Notes in Biomathematics 70, pp. 2735, Springer-Verlag, Berlin.Google Scholar
[5]Ewens, W. J. (1972) The sampling theory of selectively neutral alleles. Theoret. Popn. Biol. 3, 87112.Google Scholar
[6]Ewens, W. J. (1979) Mathematical Population Genetics. Springer-Verlag, Berlin.Google Scholar
[7]Hoppe, F. M. (1984) Pólya-like urns and the Ewens sampling formula. J. Math. Biol. 20, 9194.Google Scholar
[8]Hoppe, F. M. (1987) The sampling theory of neutral alleles and an urn model in population genetics. J. Math. Biol. 25, 123159.Google Scholar
[9]Karlin, S. and Mcgregor, J. (1972) Addendum to a paper of W. Ewens. Theoret. Popn. Biol. 3, 113116.Google Scholar
[10]Kingman, J. F. C. (1977) The population structure associated with the Ewens sampling formula. Theoret. Popn. Biol. 11, 274283.Google Scholar
[11]Kingman, J. F. C. (1978) Random partitions in population genetics. Proc. R. Soc. London A361, 120.Google Scholar
[12]Kingman, J. F. C. (1978) The representation of partition structures. J. Lond. Math. Soc. (2) 18, 374380.Google Scholar
[13]Kingman, J. F. C. (1982) On the genealogy of large populations. J. Appl. Prob. 19A, 2743.Google Scholar
[14]Kingman, J. F. C. (1982) The coalescent. Stoch. Proc. Appl. 13, 235248.Google Scholar
[15]Kingman, J. F. C. (1982) Exchangeability and the evolution of large populations. In Exchangeability in Probability and Statistics, pp. 97112. North-Holland, Amsterdam.Google Scholar
[16]Watterson, G. A. (1974) The sampling theory of selectively neutral alleles. Adv. Appl. Prob. 6, 463488.Google Scholar
[17]Watterson, G. A. (1974) Models for the logarithmic series abundance distributions. Theoret. Popn. Biol. 6, 217250.Google Scholar
[18]Watterson, G. A. (1976) The stationary distribution of the infinitely-many neutral alleles diffusion model. J. Appl. Prob. 13, 639651.Google Scholar
[19]Watterson, G. A. (1984) Lines of descent and the coalescent. Theoret. Popn. Biol. 26, 7792.Google Scholar