Describing species has been a formal, intellectually rich and influential applied and basic area of study for many of the past 260 years. While formally described eukaryotic diversity still falls short of estimated eukaryotic species diversity by many hundreds of thousands of species, some recent accounts have suggested a growing number of taxonomists are within reach of describing all extant species. We present a case study that illustrates, to the contrary, a recent ‘taxonomic impediment’ in part attributable to derogation of taxonomy as a scientific discipline: contemporary practice has re-interpreted taxonomy largely as an endeavour in enumerating species. We argue that challenges lie in (1) a poor understanding of taxonomy's epistemology; (2) excessive displacement of interest toward ecological or molecular studies; (3) over-interpretation of the contributions of multiple authors describing a species; and (4) perspectives that are strongly influenced by well-known taxa. The historical and recent literature on scyphozoans reveal ghosts of taxonomy's past that persist in the present, but suggest also that a renaissance enabled by integrative taxonomy is possible in the (near) future.

To elucidate the details of both the current status of contamination and the accumulation of organotin compounds (OTs) in mangroves in coastal ecosystems, we determined the concentrations of butyltin compounds (BTs) and phenyltin compounds (PTs) in sediment and mangrove leaves collected from mangrove forests in Merambong and Tinggi Island, Malaysia. Butyltins were detected in all sediment samples collected from both regions, whereas PTs were not detected. The levels of tributyltin (TBT) compounds in the sediment samples were lower than those from previous studies conducted in Malaysia and at other sites in South-east Asia. In both Merambong and Tinggi Island, the average proportions of dibutyltin (DBT) and monobutyltin (MBT), which are degradation products of TBT, were ~70%. This result suggests that the input of TBT has decreased in Malaysia. The proportions of DBT and MBT in the sediment from Merambong were higher than those from Tinggi Island. The concentrations of TBT in mangrove leaves from Tinggi Island were significantly higher than those from Merambong. MBT was the most dominant type among the BTs in mangrove leaves from both Merambong and Tinggi Island. The ratios of the BTs burden in mangrove leaves to the BTs concentration in sediment from Merambong and Tinggi Island averaged 3.1 and 6.2, respectively. Among the values of BTs, the MBT values were found to be the highest in both regions.

Sponges are important components of intertidal marine communities. There is a lack of information about intertidal marine sponge diversity in the western coast of Portugal (North-east Atlantic). In the present work we identified the most common intertidal sponges of the western coast of Portugal, and made a comprehensive list of the intertidal species described so far for this region. Sponges belonging to the Classes Calcarea and Demospongiae were identified, the former class for the first time at these locations. Demospongiae are the most common intertidal sponges, present in all sampling locations. We used an integrative approach for Demospongiae identification, using both morphological and molecular characters. Molecular identification, using a CO1 marker proved to be helpful in the identification to the genus level, despite some limitations, such as difficulty in amplification experienced for sponges as well as non-target organisms. A total of 170 specimens were collected. Seven specimens (five species) belonged to the Class Calcarea and 163 specimens (23 species) to the Class Demospongiae. The demosponge Hymeniacidon perlevis was present at all sample locations. Calcarean species were primarily found in samples taken along the south-western coast.

Despite being classed as an asocial species, aggregations of sea anemones can be common in abundant species. UK populations of the geographically common aggressive intertidal sea anemone Actinia equina, form clustered aggregations notwithstanding a violent nature towards neighbours and relatives. Smaller in body size, and more abundant than those found in warmer climates, little research has been undertaken to discover what factors affect body size. This study investigates whether aggregation, distance to neighbour, submergence at low tide or pH in rock pools affect body size of A. equina in their natural habitat. Populations were investigated at five sites on the Yorkshire coast during August and September 2016. A total of 562 anemones were recorded revealing that solitary anemones were significantly larger than those found in clustered aggregations. In addition, anemones found submerged in rock pools at low tide were significantly larger than those found on emergent rock, and smaller anemones were found in significantly higher pH conditions (8.5+) than larger anemones. Anemones submerged at low tide are constantly able to feed and not subject to harsh conditions such as wind exposure and temperature, hence they can achieve larger sizes. Consequently, the size of the anemones may reflect a trade-off between the benefits of aggregating in exposed environments and the costs of competition for a reduced food resource.

Thermal stress events threaten coral populations by disrupting symbiosis between the coral animal and microalgal symbionts in its tissues. These symbionts are key players in the response of the coral holobiont to elevated temperature. However, little is known about the microalgal symbiont type in select corals in the north-western Philippines and how they contribute to the differential responses of coral species. Based on sequencing of major ITS2 bands from DGGE, the dominant algal symbiont in Acropora digitifera, A. millepora, A. tenuis and Favites colemani was identified to be closely related to ITS2 type C3u, Montipora digitata contained ITS2 type C15, and Seriatopora caliendrum hosted ITS2 types similar to C3-Gulf and D1. Thin branching corals, such as A. tenuis and S. caliendrum, exhibited the greatest reduction in photochemical efficiency (Fv/Fm) and symbiont density at elevated temperature, followed by M. digitata and A. millepora, to a lesser extent. A. digitifera and F. colemani were least affected by the temperature treatment. Reduction in Fv/Fm and symbiont density was more apparent in A. tenuis and A. millepora than in M. digitata and F. colemani, although these species all host ITS2 type C3u symbionts. These results suggest that the impact of elevated temperature is influenced by factors apart from symbiont type. This highlights the importance of further studies on the diversity of corals and their microalgal symbionts in the region to gain insights into their potential resilience to recurring thermal stress events.

Cold-water coral reefs are biodiversity hotspots of the deep sea. The most dominant reef-building cold-water coral in the Atlantic is Lophelia pertusa, which builds vast and structurally complex habitats. Studying the behaviours of deep-sea species is challenging due to the technological difficulties in making prolonged observations in situ, so little is known about the behavioural ecology of this important species. Observations in laboratory studies can help to enhance our understanding of the range of behaviours these species exhibit. Here we present video evidence that the cold-water coral Lophelia pertusa is capable of producing mucus nets as part of their feeding strategy. This finding suggests that L. pertusa has a more diverse range of feeding strategies than previously thought.

This study aimed to qualitatively and quantitatively analyse the molluscan assemblages associated with a Halodule wrightii seagrass bed in a rarely studied area within a conservation unit in north-eastern Brazil. Seasonal and spatial changes in several seagrass meadow characteristics, including sediment, were evaluated to explain temporal and spatial variations in the molluscs found there. The molluscan community differed in its structure among periods and meadows, as well as in the composition of its infaunal and epifaunal assemblages. The results of this study indicated that molluscs are affected by the particular characteristics of a seagrass meadow, especially by its location in the intertidal zone, more than by the area of the meadow. Molluscs were also affected by other characteristics of the seagrass meadow, such as above-ground biomass and shoot density. Changes in all molluscan assemblages were also mediated by differences among months and seasons in this region of the western equatorial Atlantic, but not by seasonal changes of the meadow. The studied meadow was found to be one of the densest in Brazil, which has considerable importance to its associated fauna.

Macrophytes provide a habitat for many species of marine invertebrates, the gastropods being one of the main components. This study provides new information about Sargassum-associated gastropod biodiversity, through characterization of the fauna from a highly impacted area of Brazil, investigating its variation at a small spatial scale and between two main seasons of the year, as well as its relationship with macroalgae parameters. Density of gastropods was higher during the warmest season and varied throughout sampling sites. A significant and positive, however weak, relationship between gastropod density and Sargassum dry weight was found in all localities. For all sites, a marked and unusual dominance of Bittiolum varium was observed. The high dominance of this species seems to be related to the impacts caused by shipping activities and highway construction in the 1970s and 1980s, which caused a decline in local species diversity that seems to have continued until now. Many species, both typical of these habitats and characteristic of other, nearby habitats, benefit from Sargassum sp. These macrophytes allow gastropods to establish and grow during their most vulnerable stages, as shown by the growth series and juvenile forms found for most species of gastropods. The present data highlight the importance of macrophyte habitats for gastropod biodiversity in coastal areas and call attention to the importance of raising knowledge on this fauna, especially in impacted areas, thus contributing to the conservation of these highly diverse and ecologically important macrophyte–gastropod systems.

Many studies have already assessed how wave action may affect morphology of intertidal species among sites that vary in wave exposure, but few attempted to look to this issue in smaller scales. Using the most common limpet of the Brazilian coast, Lottia subrugosa, and assuming position on rocky boulders as a proxy for wave action at small scale, we tested the hypothesis that waves may also influence limpet morphology at a smaller spatial scale by investigating how individual size, foot area and shell shape vary between sheltered and exposed boulder sides on three shores in the coast of Ubatuba, Brazil. Limpets consistently showed a proportionally larger foot on exposed boulder sides for all shores, indicating that stronger attachment is an important mechanism to deal with wave action dislodgement at a smaller scale. Shell shape also varied in the scale investigated here, with more conical (dissipative) shells occurring in exposed boulder sides in one exposed shore across time and in the other exposed shore in one year. Shell shape did not vary regarding boulder sides across time in the most sheltered shore. Although we did not assess large spatial scale effects of wave action in this study, variations of the effect of waves at small spatial scale observed for shell shape suggest that it may be modulated by the local wave exposure regime. Our work highlights the importance of wave action at small spatial scales, and may help to understand the ecological variability of limpets inhabiting rocky shores.

The regulatory framework of the red octopus (Octopus maya) fishery includes total allowable catches (TAC), which are based on studies conducted on the population that occurs in shallow waters. In fact, most of the biological studies of this species refer to the fraction of the population that occupies waters less than 30 m deep; however, O. maya can occur up to a 60 m depth. The aim of this study is to assess the stock of O. maya that occupies waters between 30 m and 60 m deep. Four research cruises were carried out during the closed and fishing seasons, from May 2016 to January 2017. An average of 29 sampling sites were surveyed in each cruise (±2 sampling sites) using a commercial vessel with a uniform sampling effort. In each sampling site, the swept area, the total number of octopuses captured, the total weight of the catch, and the individual weight of octopuses were recorded. Biomass was obtained with four methods: stratified random method, swept area method, geostatistical biomass model, and an unpublished method of weighted swept area. The four methods provided consistent results. The distribution pattern of species was in patches, although before the fishing season started it was more homogeneous. The fraction of the population that occurs between 30 m and 60 m deep consisted mostly of adult organisms, so it could be contributing significantly to the recruitment of the entire population, even to the fraction that is exploited.

During the expedition POS397 ‘GroMet’ in 2010 the sediments of the Great Meteor Seamount (GMS) plateau were sampled quantitatively for the first time, allowing statistical analysis of the community structure of Harpacticoida and Canuelloida. Analysis of similarity revealed no differences between three geographic regions at family/species level. Analysis of diversity indicated slightly greater diversity in the south, with more species belonging to more genera/families. Dispersal opportunities possibly occurring at the plateau (emergence, erosion, rafting) are discussed. Of 18 investigated families 106 species were identified, but only 5.66% were already scientifically known and widely distributed. Within the investigated families, 37.74% of the species belonged to shallow-water genera, leading to the conclusion that the plateau was once connected to shallow-water habitats, perhaps functioning as a stepping stone, but is now geographically isolated. This isolation is most likely due to seafloor spreading of the Atlantic Ocean and descending of the GMS. On the plateau, six species with wider distribution ranges were present, indicating that species may arrive accidentally, but their means of settlement remains unknown. Comparisons of the identified GMS plateau fauna with that of other seamounts and mid-oceanic islands revealed similar communities at family level, but at species level the GMS shares only one species with the Seine Seamount; all other elevations had more species in common. Hence, the GMS plateau is considered to be isolated regarding benthic Copepoda but may play an important role in meiofaunal species distribution, as it represents a shallow-water habitat within the deep sea.

The alien blue swimming crab, Portunus segnis (Forskål, 1775), an Indo-Pacific species, has been recorded in the southern Mediterranean Sea for decades, and its occurrence along the southern Tunisian coasts has been recorded since 2014. The feeding habits of P. segnis were studied in the Gulf of Gabes from October 2015 to September 2016. The stomach contents of 3061 crabs, ranging from 50 to 168 mm carapace width, were analysed. The stomach contents appeared to consist mainly of large quantities of crustaceans, fish and molluscs, and small quantities of echinoderms, annelids, tunicates, cnidarians, plants, unidentifiable matter and debris. The major food groups observed were crustaceans throughout the year with fish and molluscs secondly. In juvenile, sub-adult and adult crabs, crustaceans constituted the dominant food source and these were present in more than 65% of the stomachs analysed. Ingestion of fish increases as the crab matures. A significant difference (P < 0.05) was observed in the quantity of the food consumed by the two sexes. The diet also increased with increasing ovary maturity degree, while the percentage of empty stomachs in ovigerous and non-ovigerous females did not show any difference. The vacuity index varied significantly in both sex (P < 0.0001), among size (P < 0.0001) and seasons (P < 0.0001). This study shows that, despite the diversity in blue crab diets and feeding habits, it is omnivorous with a preference for animal material.

This study presents the first documented observations of a brachyuran crab's proactive fishing behaviour in conjunction with mangrove pneumatophores which are employed as prey-localization devices. All ecological data were recorded in situ using simple behavioural observations, visual census and field experiments. Field experiments were based on stimulus-response and ecological surveys on random displacement. Assemblages of Metopograpsus messor were observed daily performing a foraging/predatory tide-related cyclic behaviour pattern in an arid mangrove ecosystem which experiences challenging environmental conditions. Prey-localizing behaviour was observed during the flood tide when pneumatophore-borne vibrations were used to identify potential prey. The prey simulation field experiment (where a single pneumatophore was stimulated by knocking) showed that in >93% of instances a crab approached the exact pneumatophore being stimulated. As water levels increased during the tidal cycle M. messor was observed climbing pneumatophores. The crabs anchored themselves to the pneumatophore just above the water level with their pereiopods. The chelipeds were positioned in a pincher-like trap, and remained in a ‘capture-position’ waiting for prey to move within striking range. This characteristic fishing behaviour was performed daily by a population of M. messor. Ecological observations suggest that both these predatory behaviours are associated with the fish Aphanius dispar dispar in a direct prey–predator relation. Evidence suggests that these fishing behaviours evolved due to characteristics within the M. messor phylogeny (foraging in intertidal zones; daily displacement following tidal levels; high sensitivity to vibrations; and an opportunist diet) and its associated environment (presence of pneumatophores and high availability of a fish resource).

Quantifying interconnected performances of the modules in a colonial organism (feeding, sexual reproduction, rejuvenation, dormancy) into an integral picture enables studying functional dynamics and resource allocation at different levels – from module to population. Testing this approach on the common boreal-Arctic bryozoan Cribrilina annulata in the White Sea, we describe its life history, comparing colonies on two algal substrates with contrasting size and lifespan. Colonies living on kelps were much larger and had a higher proportion of dormant zooids, whereas the percentage of reproducing, feeding and rejuvenating zooids was higher in colonies on red algae (with the colonies also exhibiting longer reproductive period). Colony lifespan was dependent both on substrate type and on time of colony establishment, lasting from 4–5 to up to 17 months on kelps and 14–18 months on red algae. During the reproductive season (May–September) the C. annulata population consisted of colonies of three cohorts on both substrata: overwintered and two summer generations that behaved differently. Whereas overwintered and summer colonies established in June–early August produced larvae, most of the colonies established after mid-summer were preparing for hibernation and postponed reproduction until next spring. Moreover, young reproducing colonies formed brooding hermaphrodite zooids of ordinary size, whereas overwintered colonies budded smaller-sized basal and frontal (dwarf) hermaphrodites. Finally, overall zooidal performance in co-existing colonies of the overwintered and young generations was different on kelps, but similar on red algae. Altogether our findings indicate that the life histories of colonial epibionts are much more complex and evolutionarily flexible than generally acknowledged.

Widely distributed species such as Arbacia stellata adjust patterns of their life history according to local conditions. In the present study the reproductive cycle of this species was analysed throughout a sampling year. Gonadal development cycle, sex ratio, actual fecundity and oocyte size distribution were characterized and the relationship of these reproductive characteristics with environmental variables such as sea surface temperature, photoperiod, chlorophyll a and net primary production evaluated. Our results showed that A. stellata is a gonochoric sea urchin. Gametogenesis was classified into six stages for both sexes (immature, growth, pre-maturity I, pre-maturity II, mature and spawning) and no synchrony was observed for the gonads between individuals. The female to male ratio was close to 1:1 in most months. The gonadosomatic index (GSI) showed significant differences between sexes or months; however, the highest values were observed during spring, with positive correlation with chlorophyll a. No significant differences were observed in the maturity index (MI) between sexes, with a positive correlation with temperature but negative with chlorophyll. Actual fecundity showed wide variations throughout the year and correlation with chlorophyll a and temperature. Oocyte size distribution was unimodal and the predominant frequency was that of mature oocytes. The reproductive cycle of A. stellata has a semi-continuous pattern for both sexes and partial spawning throughout the year in the sampling site. We observed nutrient assimilation in the gonads during spring and a larger reproductive activity from late summer to early winter.

In some metazoans, the body surface is entirely or partly covered with an array of nipples about 100 nm or less in height. This structure, a nipple array, is sometimes called the moth-eye structure because it serves as an anti-reflection property on the compound eyes of a night moth. The nipple array is supposed to be a multifunctional structure since this structure occurs in various species across different taxa. Here, we hypothesize that the nipple array may prevent the settlement of epibionts that are often a nuisance and potentially cause serious problems for the host. Using a synthetic film that imitates the nipple array, we tested the substrate selection within ascidian larval settlement. The results indicate that the nipple array has anti-fouling properties, since more larvae settled on the flat surface than the nipple array (P < 0.01, paired t-test). The present results demonstrated that the nipple array potentially serves an anti-fouling function on the body surface, which should be important especially for sessile organisms.

Stomach contents analysis and stable isotope results indicate M. hubbsi is a generalist predator that feeds mainly on demersal fishes, followed by crustaceans and cephalopods. Ontogenetic changes in diet were identified, with fish importance increasing in the diet with hake size. Smaller hake (<250 mm) fed mostly on the sepiolid Semirossia tenera (89.45%IRI) and engraulid fish (89.96%IRI). Mid-sized hake (250–300 mm) fed mainly on benthic fish such as Bellator brachychir (95.63%IRI) and euphausiids (56.46%IRI), while larger hake (>300 mm) fed heavily on Dactylopterus volitans (94.80%IRI) and occasionally on a variety of teleosts. Significant correlations between δ13C (P < 0.05), THg (P < 0.001) and hake size occurred, whereas no relationship was observed between δ15N and hake size or δ15N and total mercury. Signatures were lowest in smaller hake with a tendency of increasing with size. Smaller and larger hake were significantly different in δ13C. Differences regarding isotopic niche width were quantified for each size group; trophic diversity and trophic redundancy among them were negligible, but hake >300 mm possibly have a larger feeding plasticity due to the combination of prey from a wide trophic level range.

Thermoregulation has been suggested to influence mitochondrial DNA (mtDNA) evolution. Previous studies revealed that the mitochondrial protein-coding genes of fish living in temperate climates have smaller dN/dS (Non-synonymous substitution rate/Synonymous substitution rate) than tropical species. However, it is unknown whether different geographic populations of one fish species experience stronger selective pressures between cold and warm climates. The biological characteristics of the Japanese sand lance, Ammodytes personatus in the North-western Pacific is well-suited for assessing the performance of mtDNA evolution among separate geographic populations. In this study, we focused on the mitochondrial ATP6 gene of A. personatus using 174 individuals from eight different sea temperature populations. Two distinct haplotype lineages and a significant population structure (P = 0.016) were found in this species. The frequencies of the two lineages varied with the changes of annual sea temperature. The southern lineage (lineage A, dN/dS = 0.0384) showed a larger dN/dS value than the northern lineage (lineage B, dN/dS = 0.0167), suggesting that sea temperature greatly influences the evolution of the two lineages. The result provides robust evidence of local adaptation between populations in A. personatus.

Although the red striped mullet is one of the main target fish of the Hellenic demersal fisheries, information about its biology is limited. The aim of this study was to describe the reproductive biology and growth of the species in the south Aegean Sea based on 1032 individuals sampled under the Data Collection Framework Program in 2016. According to the monthly variation of the maturity stages and the gonadosomatic index, spawning activity took place from March to July, although it appeared to occur throughout the year. Length at 50% maturity (L50) was 153.3 and 139.2 mm in females and males, respectively. Individual ages were determined by counting the annuli of otoliths macroscopically. Marginal increment analysis (MIA) combined with complementary information derived from otolith edge analysis, the assessment of the reproductive period and the length–frequency distribution modes of the population showed that annulus formation occurs between February and April. The length–weight relationship revealed a significant sex effect and was described by the parameters α = 0.0155 and b = 2.915 in females, and α = 0.0032 and b = 2.976 in males. The von Bertalanffy growth function (VBGF) parameters for sexes combined were Linf = 346.1 mm, k = 0.299 year−1 and t0 = −0.984 years. Longevity (tmax) was estimated at 11.75 years. This study provides valuable data for the stock assessment of M. surmuletus in one of the major Hellenic fishing grounds located in the south Aegean Sea.

The objective of this study was to identify potential recruitment sources of Prochilodus lineatus from freshwater areas (Paraná and Uruguay rivers) to estuarine population of the Río de la Plata Estuary (La Plata Basin, South America), considering young (age-1) and adult (age-7) fish. LA-ICP-MS chemical analysis of the otolith core (nine element:Ca ratios) of an unknown mixed sample from Río de la Plata Estuary (2011 and 2017) was compared with a young-of-year baseline data set (same cohort) and classified into freshwater nurseries (Paraná or Uruguay river) by using maximum classification-likelihood models (MLE and MCL) and quadratic discriminant analysis (QDA). Considering the three models used, the Uruguay River was the most important contributor for both young and adult populations. The young population (2011) was highly mixed with contributions between 31.7 to 68.3%, while the degree of mixing was found to decrease in 2017 (adult fish) from 97.1 to 100% contributions. The three employed methods showed comparable estimates, however, the QDA showed a high similarity with the MCL model, suggesting sensitivity to evaluate small contributions, unlike the MLE method. Our results show the potential application of maximum likelihood mixture models and QDA for determining the relative importance of recruitment sources of fish in estuarine waters of the La Plata Basin.