The genus Branchamphinome Hartman, 1967 is a moderately understood genus of Amphinomidae that differs morphologically from most other genera in the form of its chevron-shaped caruncle and the presence of branchiae from chaetiger 1. Branchamphinome is presently represented by two deep-water species: B. antarctica, described from the Southern Ocean and B. islandica, from Iceland. We describe a new species of Branchamphinome from shallow South-west Atlantic waters, coast of Brazil. The new taxon revealed the surprising presence of notopodial hooks in chaetiger 1, which was subsequently also found to be present in the lectotype of B. antarctica. Both the genus and Hartman's species are emended to include this morphological feature. Historically, the presence of notopodial hooks has long been considered a diagnostic character for the genus Paramphinome, particularly when distinguishing Paramphinome from Linopherus. Branchamphinome tropicalis sp. nov. was found inhabiting sand sediments at depths of 150 m and temperatures of 16–20°C. Branchamphinome tropicalis sp. nov. differs from its congeners by its characteristic and highly developed pigmentation pattern, shape of the caruncle, branchiae and disposition of prostomial eyes. This is the first report of this genus from shallow tropical waters.

An area in the central North Sea was surveyed in November 2011 in order to estimate the abundance and density of harbour porpoises (Phocoena phocoena). A total of 2833 km of pre-determined trackline were acoustically surveyed, of which 28% included visual effort. The poor sighting conditions during the survey limited visual effort and demonstrated the advantage of using acoustic techniques for studying harbour porpoise in winter months. Absolute abundance and density estimates were calculated from acoustic encounter rates using estimates of probability of detection and mean group size. The density of harbour porpoises in the west of the survey area was almost double that in the east, with UK waters to the south-west of the Dogger Bank having the highest density of the area surveyed. The overall acoustic encounter rate was higher than most other surveys in the North Sea. The mean density across the survey area of 0.63 (95% CI 0.27–1.52) individuals km−2 and distribution of porpoises was similar to that documented in the summer suggesting that high abundance of harbour porpoises in the west of the North Sea is not confined to summer months. This information is particularly relevant given plans for the construction of a large offshore wind farm on the UK section of the Dogger Bank; the resulting impacts, including acoustic disturbance from pile driving, will potentially affect substantial numbers of harbour porpoises.

An analysis of the population structure of the tanaid Sinelobus cf. stanfordi was performed at Pinheiros River mangrove, Guaratuba Bay, Paraná State, southern Brazil (25°49′S 48°34′W). Fifteen samples of 12 × 12 cm were obtained bimonthly from the surface of galleries (interconnected burrow complex) constructed by the adult mangrove crab Ucides cordatus from June 2007 to April 2008. The carapace length (CL) of a total of 714 tanaids was measured. Tanaids were divided into four demographic categories: males (M), ovigerous females (OV), preparatory females (PREP) and non-reproductive individuals (NREP) with a mean CL of 0.55, 0.49, 0.48 and 0.43 mm, respectively. In the NREP group, specimens smaller than 0.32 mm were classified as juveniles. NREP predominated in all sampling months, and among sexually mature individuals, a strong predominance of females was observed throughout the study period. Temporal fluctuations in abundance were observed, with a peak in August 2007. The reproductive period of this species is continuous, with a peak in the summer, like most S. cf. stanfordi populations.

Currently, little is known about the helminth fauna in sirenian species. Therefore, the objective of this study was to assess the frequency of infection by Pulmonicola cochleotrema in Antillean manatees (Trichechus manatus manatus), in the North-eastern region of Brazil. Between the years of 1989 and 2014, 88 manatees found on the North-eastern Brazilian coast were clinically examined. They included animals that were found dead, animals maintained in captivity and specimens reintroduced into conservation areas. During their physical examination, helminths present in necropsied carcasses and in reintroduced animals were collected, as well as faecal samples. Parasites were detected in 7.95% (7/88) of the animals; all specimens collected being identified as P. cochleotrema. Only adult manatees were infected, and in two cases clinical signs were observed. This is the first report on the occurrence of P. cochleotrema in Antillean manatees in the states of Paraíba and Sergipe, in the North-eastern coast of Brazil.

Among gastropods, dimorphism is reported in shell size, radular characteristic, and to a lesser extent in shell shape. The relationship of dimorphic characters of the shell with spawning is scarcely studied in literature. Buccinanops globulosus is an interesting model to study sexual dimorphism in shell shape, because the adults attach their egg capsules to the females’ own shells (callus zone). Our hypothesis is that the shell dimorphism is evidenced in the form (size and shape) of callus zones of the females' shells, compared with the males'. In order to test this hypothesis we use a 3D geometric morphometrics (GM) method with several advantages over 2D GM. The relationship between callus shape and size was allometric. During growth, the main callus shape changes are related to the mean size increment, which is more evident in larger females. These callus zones are characteristically slender in males and small females, and more inflated in large females. Our analyses revealed that female shells are different from male ones and those differences are significant on the callus zone where the egg capsules are attached by the female. This finding suggests a relationship of the shell form with spawning. Our findings are not only relevant in terms of the shell dimorphism of the particular spawning substrate area (callus zones) and its reproductive implications, but also provide insights into the evaluation of shell shape variation on areas without type I or II anatomical landmarks in 3D GM.

The present study investigates the potential of algal oil (extracted from Nannochloropsis salina), cod liver oil, olive oil and yeast for live prey enrichments in A. percula larviculture. After hatching, larvae were divided into six experimental groups as follows. Larvae fed on non-enriched (control), cod liver oil enriched, olive oil enriched, algal oil enriched, yeast enriched live prey and wild collected mixed plankton. Growth (total length, standard length, body depth, head depth and weight), survival, carotenoid and PUFAs content were observed at higher levels in juveniles fed on wild plankton and algal oil enriched diets. Thyroid hormones (T3, T4 and TSH) levels were also higher in the juveniles fed on wild plankton followed by algal oil enriched diet. Based on the present study, it can be concluded that mixed zooplankton and algal oil enriched rotifers Brachionus plicatilis and Artemia nauplii may be considered suitable live prey for clownfish larviculture.

Winter cooling and persistent mixing for more than a quarter of year (November to early March) along the North Eastern Arabian Sea (NEAS) results in nutrient enrichment of the euphotic column thereby triggering biological production. Hydrographic characteristics of NEAS during Late Winter Monsoon (LWM) and Early Spring Inter Monsoon (ESIM) and the influence on biological production are overviewed here. Winter convective mixing signatures were evident during LWM with low SST (24°C), high SSS (36.4), deep mixed layers (>100 m) and increased surface nitrate (~1 µM). Open ocean waters observed high chlorophyll a (1–2 mg m−3) and microphytoplankton abundance (1.2–1.5 × 104 cells l−1). Diatoms and green Noctiluca scintillans were the major microphytoplankton identified. ESIM observed gradual stabilization of water column with curtailment of winter signatures and strengthening of Noctiluca scintillans blooms. Mesozooplankton biomass was higher during LWM and decreased towards ESIM with intensification of Noctiluca blooms. However during ESIM, abundance of gelatinous zooplankton occurred in the bloom region. Inter-annual variations were observed in the biological responses along with the hydrographic changes. Thus the convective process during winter monsoon and stabilization of the water column during ESIM plays a significant role in the production pattern of NEAS.

Environmental specimens lining seawater blowholes of Whale Point, Ascension Island in the South Atlantic Ocean were collected (August 2012) and investigated by morphological and molecular techniques. Reported here, Acremonium stroudii (Ascomycota) sp. nov., a filamentous conidia-forming fungus, was the only fungus isolated from the samples collected. Molecular analysis of the material also indicates the presence of a novel species of green algae being present, however, isolation of this alga has not been possible. Instead it appears that this specimen, which belongs to a novel lineage within the Ulvales, sister to the Dilabifilum species, encourages fungal growth in culture and has been shown to form a symbiotic relationship on low nutrition agar plates, supported by investigation through electron microscopy. As no holotype of this species could be isolated in an axenic culture it was not suitable at this point to try to define this alga, especially as no established genus could be attributed. We recommend trying to further sample areas of Ascension Island looking for other members of this green algal lineage, both investigating free-living green algae and those which are found as lichenized photobionts.

Sea turtles host a diverse array of epibionts, yet it is not well understood what factors influence epibiont community composition. To test whether epibiont communities of sea turtles are influenced by the hosts’ nesting or foraging habitats, we characterized the epibiota of leatherback, olive ridley and green turtles nesting at a single location on the Pacific coast of Costa Rica. We also compared the epibiota of these turtles to conspecific populations nesting elsewhere in the East Pacific. If epibiont communities are influenced by nesting habitats, we predicted that sympatrically nesting turtles would have comparable epibiont taxa. Alternatively, if epibiont communities are influenced by foraging habitats, we predicted the diversity of epibiont taxa should reflect the type and diversity of the hosts’ foraging habitats. We identified 18 epibiont taxa from 18 leatherback, 19 olive ridley and six green turtles. Epibiont diversity was low on leatherbacks (four taxa), but higher for olive ridley and green turtles (12 and nine epibiont taxa respectively). The epibiont communities of olive ridley and green turtles were not statistically different, but both were different from leatherbacks. In addition, conspecific sea turtles from other nesting locations hosted more similar epibiont communities than sympatrically nesting, non-conspecifics. We conclude that epibiont diversity of nesting sea turtles is partially linked to the diversity of their foraging habitats. We also conclude that the surface properties of the skin and carapace of these turtles may contribute to the uniqueness of leatherback turtle epibiont communities and the similarities between olive ridley and green turtle epibiont communities.

Despite the ecological relevance of tropical reefs, information on species composition and coverage on sandstone reefs is very scarce. Most studies on reef systems have been conducted for true coral reefs, ecosystems that show calcareous formations with extensive coral cover and diversity. The aim of this study was to analyse the coverage of benthic assemblages in a submerged sandstone reef (22–24 m) in a relatively non-explored region (Tropical South-western Atlantic). In this area, filamentous algae (43.6%) and sponges (19.6%) are the main components of the benthic reef assemblages. Other benthic reef fauna (ascidians, corals and zoanthids) showed lower coverage, although their importance may vary depending on the area. A negative correlation between filamentous algae and slow-growing reef-building organisms (calcareous algae) was observed. High sand coverage (19.6%) over the reef revealed a high rate of silting. A low coral diversity (only two resilient species) was quantified, and most of the coral colonies were small-sized. The results provide a baseline assessment for a poorly known ecosystem with turbid-water benthic communities and higher sea-surface temperatures near the Earth's equator.

The genus Prymnesium includes several species that produce toxins with cytotoxic, ichthyotoxic, neurotoxic and haemolytic activity. Bloom episodes of Prymnesium species have been reported from several parts of the world (North America, Europe, Africa, Asia and Australia), especially from temperate and subtropical regions and most of them from brackish waters. Blooms cause great economic losses to aquaculture and fisheries around the world. The ichthyotoxic and allelopathic effects of Prymnesium have been linked to the presence of Haemolysin 1, Prymnesins 1 and 2 and, more recently, fatty acids and fatty acid amides. The toxicology of this genus with regard to different growth conditions such as light, nutrients and other parameters has been well documented. It is unknown, however, whether different species and strains from the Prymnesium genus all produce the same types and level of toxins. In this study, we have determined the haemolytic activity of eight different strains from the genus Prymnesium in both exponential and stationary phases of growth. We have also evaluated the efficiency of the extraction solvent.

Six nephtyid species were identified from samples collected off the west coast of Saudi Arabia. Two of these species had been previously reported for the Red Sea (Inermonephtys aff. inermis, Nephtys palatii), three are new records (Aglaophamus lobatus, A. cf. verrilli, Micronephthys stammeri) and one is new to science (Inermonephtys aramco). Inermonephtys aramco was collected in the southern region of the Red Sea at depths between 60 and 83 m. It is characterized by the presence of branchiae from chaetiger 15 or 16, well-developed parapodial prechaetal lamellae, broadly rounded notopodial postchaetal lamellae and rudimentary neuropodial postchaetal lamellae. The species Nephtys palatii is transferred to the genus Micronephthys. Based on the current finding, the previously known bathymetric range of Micronephthys stammeri is extended from 4–7 to 17 m, and occurrence depths for N. palatii are given for the first time (4–90 m). Full descriptions are included for all species except M. stammeri. An identification key for all the species known to occur in the Red Sea is provided.

Ice algae have successfully adapted to the extreme environmental conditions in the Antarctic, however the underlying mechanisms involved in the regulation and response of thylakoid membranes and chloroplast to low-temperature stress are still not well understood. In this study, changes in pigment concentrations, lipids, fatty acids and pigment protein complexes in thylakoid membranes and chloroplast after exposure to low temperature conditions were investigated using the Antarctic ice algae Chlamydomonas sp. ICE-L. Results showed that the chloroplasts of Chlamydomonas sp. ICE-L are distributed throughout the cell except in the nuclear region in the form of thylakoid lamellas which exists in the gap between organelles and the starch granules. Also, the structure of mitochondria has no obvious change after cold stress. Concentrations of Chl a, Chl b, monogalactosyl diacylglycerol, digalactosyl diacylglycerol and fatty acids were also observed to exhibit changes with temperature, suggesting possible adaptations to cold environments. The light harvesting complex, lutein and β-carotene played an important role for adaptation of ICE-L, and increasing of monogalactosyl diacylglycerol and digalactosyl diacylglycerol improved the overall degree of unsaturation of thylakoid membranes, thereby maintaining liquidity of thylakoid membranes. The pigments, lipids, fatty acids and pigment-protein complexes maintained the stability of the thylakoid membranes and the normal physiological function of Chlamydomonas sp. ICE-L.

This study recognizes six species of onuphid polychaetes associated with the Cymodocea nodosa meadows of the Canary Islands. Of these, three species of the genus Aponuphis, A. bilineata, A. brementi and A. ornata have been previously reported from the eastern North Atlantic, whilst A. willsiei was only known from the western Mediterranean Sea. We describe two new species: Onuphis erici sp. nov. and Kinbergonuphis sanmartini sp. nov., of which the latter represents the first discovery of the genus Kinbergonuphis in the eastern North Atlantic Ocean. Furthermore, we present brief notes on their ontogeny and ecology and remarks on the presence and microstructure of lateral organs observed in one of the new species.

Nebalia dolsandoensis sp. nov. (Malacostraca: Phyllocarida: Leptostraca), is described from specimens taken from light traps in harbours with organic-rich muddy sand and seaweeds along the south coast of Korea. The new species is characterized based on the following unique combination of characteristics: an antennular flagellum with up to only nine articles in the mature female; the fourth article of the antennule has up to four distal spine-like setae; pleonites 3–7 have rounded denticles along the posterior dorsal margins; the protopod of pleopod 4 has an even posterior margin; the uropods are distinctly short, about 0.6 times as long as pleonite 7 and the anal somite combined; the anal plates have a noticeably broad lateral ‘shoulder’. In addition, a key to the species of the genus Nebalia Leach, 1814 and partial sequences of the mitochondrial cytochrome c oxidase subunit 1 (CO1) gene from the new species are provided.

This paper provides a comprehensive checklist of the marine benthic macroalgal flora of Ascension Island (tropical South Atlantic Ocean), based on both new collections and previous literature. 82 marine macroalgae were identified from our work, including 18 green algae (Ulvophyceae), 15 brown algae (Phaeophyceae) and 49 red algae (Rhodophyta). Among our collections, 38 species and infraspecific taxa are reported for the first time from Ascension Island, including seven green, three brown and 28 red macroalgae, raising the total number of seaweeds recorded in Ascension so far to 112 taxa in species and infraspecific level. No seagrasses have been recorded at Ascension Island.

Bivalve populations display fluctuating densities resulting in different interactions among them and with their environment. Using the edible cockle (Cerastoderma edule) as a model, we investigated two alternative hypotheses concerning the effect of density on individual infection intensity by trematode parasites. Considering that these parasites infect cockles through filtration activity, our first hypothesis was that high host density will have a dilution effect so that infection intensity decreases with host density. Conversely, high cockle density could attract other hosts used by these trematode parasites to complete their life cycle. A 17-year monthly survey of a cockle population in Arcachon Bay, France, showed a negative correlation between the cockle density and the abundance of parasite larvae in juvenile cockles with a significant threshold when adult cockle density reached 400 ind. m−2. This result was confirmed for the four dominating trematode parasites, independently considered. Additionally, a field experiment was performed during 9 months, with cockles maintained in enclosures with two densities (200 and 800 ind. m−2). Individual cockle mean infection was 1.5 times higher at low cockle density, mainly due to one dominant trematode species (Parvatrema minutum). In conclusion and confirming the first advanced hypothesis, for certain environments, negative consequences of bivalve intraspecific competition at high density can be mitigated by lower parasite pressure.

The lagoon of El Bibane (Tunisia) is a Mediterranean coastal area that is affected by an increasing human impact. Thus, an estimation of its biodiversity and an ecological quality assessment are very urgent. This study investigates the meiofaunal and nematode communities of the El Bibane lagoon both from a taxonomic and a functional point of view. Nematodes were the dominant group as is common in brackish water systems. The nematode community was made up of 62 genera in 22 families. Xyalidae, Chromadoridae and Cyatholaimidae were the richest and most abundant families. The taxonomic composition and biodiversity of nematodes were comparable to those found in other European and Mediterranean transitional areas. Both meiofauna and nematodes showed a clear subdivision between marginal and central areas. The central stations, represented by fine sediments and higher amounts of organic carbon, seemed to be characterized by low meiofaunal densities, nematode diversity and a strong dominance of 1B and 2B trophic guilds. These trends could be related not only to the grain size and organic load, but also to a possible influence of tidal currents that can transport pollutants in the central area of the lagoon coming from the adjacent coastal areas. Shannon diversity and life strategies are not always in agreement in defining the ecological quality, but an overall worse ecological quality was detected especially at S6. The results of this study are an important starting point for the future monitoring of the potential and actual human impact on the El Bibane area over time.

Accurate discrimination of two morphologically similar species of Patella limpets has been facilitated by using qPCR amplification of species-specific mitochondrial genomic regions. Cost-effective and non-destructive sampling is achieved using a mucus swab and simple sample lysis and dilution to create a PCR template. Results show 100% concurrence with dissection and microscopic analysis, and the technique has been employed successfully in field studies. The use of highly sensitive DNA barcoding techniques such as this hold great potential for improving previously challenging field assessments of species abundance.