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Successful DNA sequencing of a 75 year-old herbarium specimen of Aspicilia aschabadensis (J. Steiner) Mereschk.

Published online by Cambridge University Press:  03 August 2010

Mohammad Sohrabi ,
Leena Myllys  and
Soili Stenroos
Mohammad Sohrabi
Affiliation:
Botanical Museum, Finnish Museum of Natural History, P.O. Box 7 and Plant Biology, Department of Biological and Environmental Sciences P.O. Box 65, University of Helsinki, Finland. (c/o) Department of Plant Science, University of Tabriz, 51666, Tabriz, Iran. Email: mohammad.sohrabi@helsinki.fi
Leena Myllys
Affiliation:
Botanical Museum, Finnish Museum of Natural History, P.O. Box 7, FI-00014University of Helsinki, Finland.
Soili Stenroos
Affiliation:
Botanical Museum, Finnish Museum of Natural History, P.O. Box 7, FI-00014University of Helsinki, Finland.
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Abstract

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Type
Short Communications
Information
The Lichenologist , Volume 42 , Issue 5 , September 2010 , pp. 626 - 628
Copyright
Copyright © British Lichen Society 2010

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References

Ames, M. & Spooner, D. M. (2008) DNA from herbarium specimens settles a controversy about origins of the European potato. American Journal of Botany 95: 252–257.CrossRefGoogle Scholar
Andreasen, K., Manktelow, M. & Razafimandimbison, G. (2009) Successful DNA amplification of a more than 200 year-old herbarium specimen: recovering material from the Linnaean era. Taxon 58: 959–962.CrossRefGoogle Scholar
Cubero, O. F., Crespo, A., Jamshid, F. & Bridge, P. D. (1999). DNA extraction and PCR amplification method suitable for fresh, herbarium stored, lichenized, and other fungi. Plant Systematics and Evolution. 216: 243–249.CrossRefGoogle Scholar
Drábková, L., Kirschner, J. & Vlček, Č. (2002) Comparison of seven DNA extraction and amplification protocols in historical herbarium specimens of Juncaceae. Plant Molecular Biology Reporter 20: 161–175.CrossRefGoogle Scholar
Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792–1797.CrossRefGoogle ScholarPubMed
Gardes, M. & Bruns, T. D. (1993) ITS primers with enhanced specificity for basidiomycetes – application to the identification of mycorrhizae and rusts. Molecular Ecology 2: 113–118.CrossRefGoogle Scholar
Grube, M., DePriest, P. T., Gargas, A. & Hafellner, J. (1995) DNA isolation from lichen ascomata. Mycological Research 99: 1321–1324.CrossRefGoogle Scholar
Lumbsch, H.T., Schmitt, I., Lücking, R., Wiklund, E. & Wedin, M. (2007) The phylogenetic placement of Ostropales within Lecanoromycetes (Ascomycota) revisited. Mycological Research 111: 257–267.CrossRefGoogle ScholarPubMed
Miądlikowska, J., Kauff, F., Hofstetter, V., Fraker, E., Grube, M., Hafellner, J., Reeb, V., Hodkinson, B.P., Kukwa, M., Lücking, R. et al. (2006) New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein coding genes. Mycologia 98: 1088–1103.CrossRefGoogle ScholarPubMed
O'Gorman, D. T., Sholberg, P. L., Stokes, S. C. & Ginns, J. (2008) DNA sequence analysis of herbarium specimens facilitates the revival of Botryris mali, a post harvest pathogen of apple. Mycologia 100: 227–235.CrossRefGoogle Scholar
Schmitt, I., Yamamoto, Y. & Lumbsch, H. T. (2006) Phylogeny of Pertusariales (Ascomycotina): resurrection of Ochrolechiaceae and new circumscription of Megasporaceae. Journal of the Hattori Botanical Laboratory 100: 753–764.Google Scholar
Sohrabi, M. & Ahti, T. (2010) Nomenclatural synopsis of the Old World's “manna” lichens of the genus Aspicilia (Megasporaceae). Taxon 59: 628–636.CrossRefGoogle Scholar
Swofford, D. L. (2002) PAUP. Phylogenetic Analysis Using Parsimony. Version 4.0. Sunderland, Massachusetts: Sinauer Associates.Google Scholar
Telle, S. & Thines, M. (2008) Amplification of cox2 (∼620bp) from 2 mg of up to 129 years old herbarium specimens, comparing 19 extraction methods and 15 polymerases. PLoS ONE 3(10): e3584. doi:10.1371/journal.pone.0003548CrossRefGoogle Scholar
White, T. J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: a Guide to Methods and Applications (Innis, M. A., Gelfond, D. H., Sninsky, J. J. & White, T. J., eds): 315–322. New York: Academic Press, Inc.Google Scholar
Zhang, Z., Schwartz, S., Wagner, L. & Miller, W. (2000) A greedy algorithm for aligning DNA sequences. Journal of Computation Biology 7: 203–214.CrossRefGoogle ScholarPubMed